These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1146 fasta sequence [AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT-C-GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG-AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA-G-ACGCAGCAGAAGGAGGA-TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC-GTCCCATTCGA-GATGTT-CA-TTAGTA-CGTGCAAG-AGGTT-GAGGATCA-TGAAGGGGTCTGAAG-CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT-GAGCCT-CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA] [+] EMBL AK073361 [AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT C GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT GAGCCT CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA] [+] EMBL CA754663 [ AGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT C GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCCAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACNACNACNAAAAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACNAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGGT CA TTAGTA CGTGGCAG AGGTT GAGng ] [+] EMBL OSS4544A [ CACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCC CCTTNCNGACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTNATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGG GCAGGTGGTGGGATNGCCGCCGGTNAGGTCGTACAGGAAAGAGCTTCCTTCAGCCGACGACGACGACGACGAAGAGCAAGCNGCCGCCGGTTTCCGCGGNGGGGAA G ACGAAGCAGAAGGAGGATTTTTGCCCGCGCCGt ] [+] EMBL OSS0861A [ CACACAGNTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTTNCGGGGACGGAGGAGGAGGCGNCGTCGTCGCGTT CTGACGNCCAGGGCCGGAAGCAAG ] [+] EMBL AU223413 [ GGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAA ] [+] EMBL OS1321883 [ CTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGNCGCCGCCGGCTGCCGCGGC GCGNATGNACGTAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTNAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTNCGGCG ] [+] EMBL BI805155 [ TGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGTCTACCGGGAGCTTCGCGAGGCACTGGA GCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAAAGAGAGAAAGAAAAGGAAAGCAAAAAA ] [+] EMBL AU097662 [ GACGGTCCAATCGGAGGATGTTCCATTTAGTACCGTGCAAGAAGGTTNGAGGATCACTGAAAGGGTCTGAAGCCAAGAGGCCTAGGAGCAACAA GGGTT AAACTG AC AC ACNAG AGAAATCATCATCATGTGTGCATGAGCAATTC TTTGTCCTTTNTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT GAGCCT CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTAaaaaaaaaa ] [+] EMBL C91894 [ atag GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTTGGAGCCTCCCATGTGTGTTTGTACAAAGC ] consensusID : consensus_15471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1091 fasta sequence [ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCGCGGCGGA-GGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCGTCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGAGCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCTCCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGTACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073044 [ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCGCGGCGGA GGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCGTCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGAGCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCTCCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGTACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTActatact ] [+] EMBL OSS1428A [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACANCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACANCCGACGACCTGCCCTCCACGNCCAGGGGCAAGAAGCGCGNCGTCGCGNCGNA GGACAACAACGg ] [+] EMBL AU062894 [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGNCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCG GGCGGANGGACAACAACGCCAACGTCGCCGTCGCCGACGACGACGAGCACGAC ] [+] EMBL OSS1448A [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATTGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTNGGCCTTCCTNGG ] [+] EMBL C27641 [ TTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCNGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGG CTGCCTGGGACAGCCGACGACCTNCCCTCCACGCCCAGGGGCAAG ] [+] EMBL AU082466 [ GGCGCCGTNCTTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAANTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTA AAAAAAAAAAAA ] [+] EMBL CB966815 [ CCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT ] [+] EMBL AU166913 [ GCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATNTGAAGCCNCAGGGCTAGGATCNCCAAGGCAAATGAAGATNTAATNTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTNTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCNCAAAGGAGATGTGGAGATTTGGGCTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTNCTCCTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097039 [ ATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTA AAAAA ] consensusID : consensus_15471#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GCGCCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACATGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGCCCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACCCAGCAGCATCGCATCGCATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAATTTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAACAGCCAACGACCACGGATGGCATGGTGCTTTGCTTGCGTTTAGTGTTCCCATCGTCTTCAACAAAACTTCAGTCAGGGTTTTCACATTTTCATGCAATTTTCAGCCAGCCACCAACGGCAGCATT] [+] EMBL CB965851 [GCGCCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACATGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGCCCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACCCAGCAGCATCGCATCGCATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAATTTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAACAGCCAACGACCACGGATGGCATGGTGCTTTGCTTGCGTTTAGTGTTCCCATCGTCTTCAACAAAACTTCAGTCAGGGTTTTCACATTTTCATGCAATTTTCAGCCAGCCACCAACGGCAGCATT] consensusID : consensus_15471#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TAGCTTGCGGCGTTCTCCGGCGCCGCGACGGCGCCACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT] [+] EMBL CB966470 [TAGCTTGCGGCGTTCTCCGGCGCCGCGACGGCGCCACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT] consensusID : consensus_15471#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [ACGCCGCCCTCNACCCGTNCCGACTTCGCCGTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNTCCCNTTCGAGATGTTCATTNGTACCGTGCAAGNGGTTGAGGNTCNTGAAGGGGTCTGAAGCAAGAGGCCTNGGNGCAACANGGGGTTAAAAACTGNNCNACAACAAGANGAANTCNTCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097008 [ACGCCGCCCTCNACCCGTNCCGACTTCGCCGTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNTCCCNTTCGAGATGTTCATTNGTACCGTGCAAGNGGTTGAGGNTCNTGAAGGGGTCTGAAGCAAGAGGCCTNGGNGCAACANGGGGTTAAAAACTGNNCNACAACAAGANGAANTCNTCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15471#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CTGGAGGCCATGTTCCTGTGCTTCTCCGGCGGCNCCNCCNGCNGNCCGCCGTCANCCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGTCCCATTCGAGATGTTCATTAGTACGTNCAATAGGTTGAGGATCATGAAGGGGTCTAAAGCAAGAGGTCTAGGAGCANCAAGGGGTTAAAAACTGNACAACA] [+] EMBL AU066128 [CTGGAGGCCATGTTCCTGTGCTTCTCCGGCGGCNCCNCCNGCNGNCCGCCGTCANCCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGTCCCATTCGAGATGTTCATTAGTACGTNCAATAGGTTGAGGATCATGAAGGGGTCTAAAGCAAGAGGTCTAGGAGCANCAAGGGGTTAAAAACTGNACAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15471#1 ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACC 60 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 ------------------------------------------------------------ consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 ACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAG 120 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 ------------------------AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTA 36 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 AAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGC 180 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 CCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGA 96 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 TGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCG 240 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 GTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGC 156 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 CCGCGGCGGAGGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCG 300 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 CGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGTCGACGCCCAGGGCCGGAAGCAAGCGCG 216 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 TCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGT 360 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 CCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGG 276 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 ACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGA 420 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 TGGTGGGATGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCCTCCAGCCGACGACGACGA 336 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 GCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCT 480 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 CGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGAGACGCAGCAGAAGGAGGATG 396 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 CCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGT 540 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 TCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGA 456 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 ACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGG 600 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 AGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGT 516 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 -----------------------------------------------CTGGAGGCCATGT 13 consensus_15471#1 AGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCG-GAGTTCGCC 659 consensus_15471#3 -----TAGCTTGCGGCGTTCTCCGGCGCCGC-GACGGCGCCA-CCCGTCG-GAGTTCGCC 52 consensus_15471#2 ------------------------GCGCCGCCGACGGCGCCAACCCGTCG-GAGTTCGCC 35 consensus_15471#0 TCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCC-GACTTCGCC 575 consensus_15471#4 ------------------------------ACGCCGCCCTCNACCCGTNCCGACTTCGCC 30 consensus_15471#5 TCCTGTGCTTCTCCGGCGGCNCCNCCNGC-NGNCCGCCGTCANCCCGTCC-GACTTCGCC 71 ** * ***** ** ****** consensus_15471#1 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCTTTCG-ACA 717 consensus_15471#3 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCTTTCG-ACA 110 consensus_15471#2 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACA 95 consensus_15471#0 GTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCATTCG-AGA 633 consensus_15471#4 GTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNT-CCCNTTCG-AGA 88 consensus_15471#5 GTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGT-CCCATTCG-AGA 129 ****** * *** ***** *** * * **** *********** *** **** * * consensus_15471#1 TGTTCACCAG--CACATGCAAG--AAGTTGAGGAT---CATGAAGAGA---TCTG-AAGC 766 consensus_15471#3 TGTTCACCAG--CACATGCAAG--AAGTTGAGGAT---CATGAAGAGA---TCTG-AAGC 159 consensus_15471#2 TGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGC 155 consensus_15471#0 TGTTCATTAG-TAC-GTGCAAG--AGGTTGAGGAT---CATGAAGGGG---TCTG-AAGC 682 consensus_15471#4 TGTTCATTNG-TACCGTGCAAG--NGGTTGAGGNT---CNTGAAGGGG---TCTG-AAGC 138 consensus_15471#5 TGTTCATTAG-TAC-GTNCAAT--AGGTTGAGGAT---CATGAAGGGG---TCTA-AAGC 178 ****** * * * **** * * ** * *** **** consensus_15471#1 CACAGGG--CTAGG-ATCACCAAGG--CAAATGAAG--ATCTAATCTAAG--AGCGA--- 814 consensus_15471#3 CACAGGG--CTAGG-ATCACCAAGG--CAAATGAAG--ATCTAATCTAAG--AGCGA--- 207 consensus_15471#2 CCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACC 215 consensus_15471#0 AAGAGGC--CTAGGAGCAACAAGGGGTTAAAAACTG--AACAACAACAAGAAGAAATCAT 738 consensus_15471#4 AAGAGGC--CTNGGNGCAACANGGGGTTAAAAACTG--NNCNACAACAAGANGAANTCNT 194 consensus_15471#5 AAGAGGT--CTAGGAGCANCAAGGGGTTAAAAACTG--NACAACA--------------- 219 * ** ** * * *** * * consensus_15471#1 CAAGAG-ATCG-ATCG---ATGCA--TTCCATCAAC---TTTTCATTT--CTTTTT--AT 860 consensus_15471#3 CAAGAG-ATCG-ATCG---ATGCA--TTCCATCAAC---TTTTCATTT--CTTTTT--AT 253 consensus_15471#2 CAGCAGCATCGCATCGC--ATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAAT 273 consensus_15471#0 CATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCAT 798 consensus_15471#4 CATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCAT 254 consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 TTTTTTTCCTC----CCAAGCCAAAAAGGAG----ATG-AGCTTGGG--GGC-ATCAAA- 907 consensus_15471#3 TTTTTTTCCTC----CCAAGCCAAAAAGGAG----ATG-AGCTTGGG--GGC-ATCAAA- 300 consensus_15471#2 TTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAAC 333 consensus_15471#0 CTCATCTCCTCATTGCAACCTTCAAGAAAGAGAG-AGAGAGAAAGAAAAGGAAAGCAAAA 857 consensus_15471#4 CTCATCTCCTCATTGCAACCTTCAAGAAAGAGAG-AGAGAGAAAGAAAAGGAAAGCAAAA 313 consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 -GCAAACA----CATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTT 962 consensus_15471#3 -GCAAACA----CATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTT 355 consensus_15471#2 AGCCAACGAC--CACGGATGGCATGGTGCTTTGCTTGCGT-TTAGTGTTCCCATCGTCTT 390 consensus_15471#0 AAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAG 917 consensus_15471#4 AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------- 338 consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 TAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGT 1022 consensus_15471#3 TAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGT 415 consensus_15471#2 CAAC---AAAACTTCAGT--------CAGGGTTTTCACATTTTCATGCAATTTTCAGCCA 439 consensus_15471#0 CATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTA 977 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 GTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTAAAAAAAAAAAA 1082 consensus_15471#3 GTATGTACAAACGAAACAGTTATTATATAT------------------------------ 445 consensus_15471#2 GC---CACCAACGGCAGCATT--------------------------------------- 457 consensus_15471#0 GAAAACACAGAAGGAATGGAGGTTCGAGTTGAGCCTCCATGTGTGTTTGTACAAAGCAAA 1037 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 AAAAAAAAA--------------------------------------------------- 1091 consensus_15471#3 ------------------------------------------------------------ consensus_15471#2 ------------------------------------------------------------ consensus_15471#0 CATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGC 1097 consensus_15471#4 ------------------------------------------------------------ consensus_15471#5 ------------------------------------------------------------ consensus_15471#1 ------------------------------------------------- consensus_15471#3 ------------------------------------------------- consensus_15471#2 ------------------------------------------------- consensus_15471#0 ATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA 1146 consensus_15471#4 ------------------------------------------------- consensus_15471#5 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||