These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1371 fasta sequence [CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC-GG-GT-CGTGGCGCA-NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG-GG-TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC-GG-GCCACCGTCCGCCTCTTCTTCCACGACTGC-TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC-CTCTCCCTCGCCGGCGACGGC-TTCGACACGG-TCAT-CAAGGCCAGGG-CGGCCGT-CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG-CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC-AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT--CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA-CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC-AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT-C-AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA-CTATGGGAGCAAGATAAATTATC-TGAACAAAAAGTCAAAAAAA] [+] EMBL AK071181 [CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GGCGT CGTGGCGCAGCTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGGC TTCGACACGG TCAT CAAGGCCAGGG CGGCCGT CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGAT ] [-] EMBL C19121 [ GCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGNACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGNCGCCGNCGGGAGC GGCGT CGTGGCGCA CTCAGGCGGGACTACTACGTCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGTCGTC GG GGCANCGTCCGGCTNTTCTTTCACGACTGC TTCGTCGAGGGATNCGACGNGTCGGTGATCGTGGTGTCGTCGGGGAACAANAAGGCGGAGAAGGACCACCCGAACAAA CT ] [+] EMBL C91753 [ AGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTCCGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGNCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCANCCGAACAAC CTCTTCCTCGNCGGCGAC GC TTt ] [+] EMBL C96874 [ catgAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTACGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGNCTCTTCTTNCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTNGCCGGCGACGGCTTTCGACACGGTTCATNCAAGGCCAGGGACGGCCGTACGACGNCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGACGGACATNCTGGTCATGGCCACCCGA ] [+] EMBL C22705 [ ttatGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCG CGNCGCCGNGAGC GG TT CGTGGCGCA GTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGCCGTCGGG GGCACCGTCCGNCTCTTCTTCCACGACTGC TTCGTCGAGGGATNCGACGCGTCGGTGATCGTGGTGTCGTCGGGG ACAACACGGCGGA ] [+] EMBL C22700 [ GCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC G GT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCNTGTGCCCCGACGTCGAGACCATCGTGCGCAACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGCTTTCGTCGAGGGATGCNACGCGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGNT TTCGACACGG TCAT CAAGGNCAGGG CGGCCGT CGA ] [+] EMBL OSC328 [ nCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GN GTNCGTGGCGCA CTCAGGCGGGACTACTACGCCAGCTTNTGCCCCGACGTCNAGACCATCGTGCGCAACG GG TGACCAAGAAAGTNCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGNTTCTTCTTCCACGACTGT TTCGTCGAGGGATGCAACGNGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACNTTTTCCTTCGCgg ] [+] EMBL C73541 [ ACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCNGG TT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCNCCGACGTCGAGACCATCGTGCGCNANG GGTTGACCAAGAAAGTNCAGGAGACGTCCGTNGCCGTC GG NCCACCGTCCGCCTCTNCTTCCACGACTGC NTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTTCCTCGCCGGCGAAGNT TTCG ] [+] EMBL BI800303 [ ACCCCGCGCGCTTTCGACAACCAGTACTTCGTCAAACCTCCAGAA GGGATGGCCCTCTTCACCTCCGACCAGGTGCTATACTCCGACGCCCGTTCGCGCCCCACCGTCGACGCCTGGCCGCCCAACAGCTCCGACTTCGAGCTTCCGCCTTCGTCCCCCCCATGACCAACCTC GCCGCGTCGGCGTCAAGACCGACCCGTC CAGGCCAACATCC CCGCGACTGCGCGATGCTCATCTGA C CCGCCGCGGGTGGGATGGTCGTCGGCACGACGAC GCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGACCAAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT CAAATTAAATTACCTAGCTAGCCCAAATGTATTGTG TTTTTAA CTATGGGAGCAAGATAAATTATC TGAACAAAAA ] [+] EMBL AU076064 [ C AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTNGCGCCCCACCGTCGACGCCTGGGCGGCCAAAAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGANCG CGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATC TGAACATGTTGTCAAAAAAA] [+] EMBL C19114 [ TTCACCTNCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CCGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGANGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCNGGNATTAAGNTTAaaaaa ] [+] EMBL C19125 [ CGNTCGCGCCCCACNGTAGACGCNTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCTTTCGTCGCCGCCATGACCAACTTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCANGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGA ] [+] EMBL BI796745 [ ccg AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATCTTGAAAAAAA ] [+] EMBL BI796648 [ AATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCC AATTAAATTACCTAGCTAGGCC AATGTATTGTGTTTTTTAACCTATGGGAGC AGATAAATTATC TGAAAAA ] consensusID : consensus_15509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 675 fasta sequence [ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC-ACCGTCGACGCCTGGGCGGCCAA-CAGCTCCGACTTCG-AGCTCG-CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC-GGC-GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAAAAAAAAAAAA] [+] EMBL BI796482 [ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC ACCGTCGACGCCTGGGCGGCCAA CAGCTCCGACTTCG AGCTCG CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCCAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCAaaaaaaaaa ] [-] EMBL C22707 [ CTCCGACGACCCGTNGCGCCCCAACCGTCGACNCTTGGGCGGCAAANAAGCTCCGACTTCGNAGCTCGCCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTNAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGAT ] [+] EMBL C19113 [ TCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCNCCCGCGGNCGGCATGGGCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAA ] [+] EMBL BI797861 [ GACGGCGGTCAGCAGGCAGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAaaa ] [+] EMBL AU029760 [ ACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCNNCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTNGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATNTTGGAANCCNGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTCATTTTCAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG-ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC-AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA] [+] EMBL AU075994 [CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA] [+] EMBL C19119 [ AGGGNATGGGCCTCTTNACCTCCGACNAGTTGCTCTACTCCGACGAACCCGTCGCGCCCCACCGTCGACCCTTGGGCGGCCAAAAAGCTCCGACTTCGAGCTCNCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTG AANCCCCGCGGGCGGCATNGGC TCGGCACGACGACGGCGGTCANCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAANTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAnn] consensusID : consensus_15509#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA] [+] EMBL C22699 [GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTA 60 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 GTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGAT 120 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 TCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCGGGTCGTGGCGCANTCAGGCGGG 180 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 ACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAA 240 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 AGTGCAGGAGACGTCCGTCGCCGTCGGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTC 300 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 GTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAG 360 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 GACCACCCGAACAACCTCTCCCTCGCCGGCGACGGCTTCGACACGGTCATCAAGGCCAGG 420 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 GCGGCCGTCGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGCGGACATCCTGGTC 480 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 ATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGG 540 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 AGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCG 600 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 TTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATG 660 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 ------------------------------------------------------------ consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 ATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGG 720 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 -ACCGACATGATCGCTTTATCTCGGCG-CACACGTGGGTTCGCGCACTGCGGCACGTTCG 58 consensus_15509#2 --------------------CCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 36 consensus_15509#0 ATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 776 consensus_15509#3 ---GGAGCTGGGATTCGGATTCTGGTGGTG-ATGTTGGCGGTCGCNCGCCGGG---AGCN 53 * * * * ** *** * * * consensus_15509#1 CGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGA-CTGGACCCGGTGAC 117 consensus_15509#2 GGCGGCGTGCCCGGCCGGCG---TGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGAC 93 consensus_15509#0 GGCGGCGTGCCCGGCCGGCG---TGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGAC 833 consensus_15509#3 ACNGNTGNGCGCANTCAGNGC--GGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGAC 111 * * * * * **** * * ** * ** * *** consensus_15509#1 --CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 175 consensus_15509#2 G-CCGCGCGCNTTCGACAACCAGTA-TTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 151 consensus_15509#0 G-CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 892 consensus_15509#3 CATCGTGCGCGACGGGTGACCAAGA--------AAGTGCAGGAGACGTCCGTCGCCGTCG 163 ** **** * **** * * * *** ** * * * * ** consensus_15509#1 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 234 consensus_15509#2 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 210 consensus_15509#0 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 951 consensus_15509#3 GCCACCGTCCGC--CTCTTCTTCCACGACTGCTT-CGTCGAGGGATGCGACGCGTCGGTG 220 * * * * **** ** * ***** *** ** * * ****** * ** * consensus_15509#1 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 290 consensus_15509#2 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 266 consensus_15509#0 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 1007 consensus_15509#3 ATCG-TGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCT 279 * * ** * ** * * ** * * *** ** ******* ** consensus_15509#1 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 350 consensus_15509#2 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 326 consensus_15509#0 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 1067 consensus_15509#3 CGCCGGCGACGTTTTCGACACG------GTCATCAAG-GCCAGGGCGGCGTCNGACGC-- 330 ** ***** * **** ** * ** ** *** * * *** * * consensus_15509#1 CTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 410 consensus_15509#2 CTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 386 consensus_15509#0 CTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 1127 consensus_15509#3 -CGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGA 389 * * * ** * ** * ** * *** * *** ** consensus_15509#1 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 470 consensus_15509#2 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 446 consensus_15509#0 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 1187 consensus_15509#3 GACGTAATTT---TCGTTTGCCGGCGGCNTTCG--------TACGGCGTTGAACTTCGGG 438 * ** * * * *** * ** * * * *** **** *** * consensus_15509#1 AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 530 consensus_15509#2 AAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA----------------- 489 consensus_15509#0 AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 1247 consensus_15509#3 AA---------------------------------------------------------- 440 ** consensus_15509#1 GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 590 consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 1307 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATT 650 consensus_15509#2 ------------------------------------------------------------ consensus_15509#0 CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACAAAAAGTCAAA 1367 consensus_15509#3 ------------------------------------------------------------ consensus_15509#1 TTCATCTGCAAAAAAAAAAAAAAAA 675 consensus_15509#2 ------------------------- consensus_15509#0 AAAA--------------------- 1371 consensus_15509#3 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||