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Oryza sativa
cluster # 15509 cluster # 15509       Sequences # 22       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15509#0 length = 1371 sequences # 14  
consensus_15509#1 length = 675 sequences # 5  
consensus_15509#2 length = 489 sequences # 2  
consensus_15509#3 length = 440 sequences # 1  

consensusID : consensus_15509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1371
fasta sequence
                              [CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC-GG-GT-CGTGGCGCA-NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG-GG-TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC-GG-GCCACCGTCCGCCTCTTCTTCCACGACTGC-TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC-CTCTCCCTCGCCGGCGACGGC-TTCGACACGG-TCAT-CAAGGCCAGGG-CGGCCGT-CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG-CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC-AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT--CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA-CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC-AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT-C-AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA-CTATGGGAGCAAGATAAATTATC-TGAACAAAAAGTCAAAAAAA]

[+] EMBL AK071181             [CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GGCGT CGTGGCGCAGCTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGGC TTCGACACGG TCAT CAAGGCCAGGG CGGCCGT CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT  CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGAT                             ]
[-] EMBL C19121               [                                                GCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGNACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGNCGCCGNCGGGAGC GGCGT CGTGGCGCA CTCAGGCGGGACTACTACGTCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGTCGTC GG GGCANCGTCCGGCTNTTCTTTCACGACTGC TTCGTCGAGGGATNCGACGNGTCGGTGATCGTGGTGTCGTCGGGGAACAANAAGGCGGAGAAGGACCACCCGAACAAA CT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C91753               [                                                                               AGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTCCGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGNCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCANCCGAACAAC CTCTTCCTCGNCGGCGAC GC TTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C96874               [                                                                               catgAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTACGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGNCTCTTCTTNCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTNGCCGGCGACGGCTTTCGACACGGTTCATNCAAGGCCAGGGACGGCCGTACGACGNCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGACGGACATNCTGGTCATGGCCACCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C22705               [                                                                                ttatGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCG CGNCGCCGNGAGC GG TT CGTGGCGCA GTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGCCGTCGGG GGCACCGTCCGNCTCTTCTTCCACGACTGC TTCGTCGAGGGATNCGACGCGTCGGTGATCGTGGTGTCGTCGGGG ACAACACGGCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C22700               [                                                                                      GCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC  G GT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCNTGTGCCCCGACGTCGAGACCATCGTGCGCAACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGCTTTCGTCGAGGGATGCNACGCGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGNT TTCGACACGG TCAT CAAGGNCAGGG CGGCCGT CGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSC328               [                                                                                             nCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GN GTNCGTGGCGCA CTCAGGCGGGACTACTACGCCAGCTTNTGCCCCGACGTCNAGACCATCGTGCGCAACG GG TGACCAAGAAAGTNCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGNTTCTTCTTCCACGACTGT TTCGTCGAGGGATGCAACGNGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACNTTTTCCTTCGCgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C73541               [                                                                                               ACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCNGG TT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCNCCGACGTCGAGACCATCGTGCGCNANG GGTTGACCAAGAAAGTNCAGGAGACGTCCGTNGCCGTC GG NCCACCGTCCGCCTCTNCTTCCACGACTGC NTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTTCCTCGCCGGCGAAGNT TTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI800303             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCCCGCGCGCTTTCGACAACCAGTACTTCGTCAAACCTCCAGAA GGGATGGCCCTCTTCACCTCCGACCAGGTGCTATACTCCGACGCCCGTTCGCGCCCCACCGTCGACGCCTGGCCGCCCAACAGCTCCGACTTCGAGCTTCCGCCTTCGTCCCCCCCATGACCAACCTC GCCGCGTCGGCGTCAAGACCGACCCGTC CAGGCCAACATCC CCGCGACTGCGCGATGCTCATCTGA C CCGCCGCGGGTGGGATGGTCGTCGGCACGACGAC GCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGACCAAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT CAAATTAAATTACCTAGCTAGCCCAAATGTATTGTG TTTTTAA CTATGGGAGCAAGATAAATTATC TGAACAAAAA          ]
[+] EMBL AU076064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               C AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTNGCGCCCCACCGTCGACGCCTGGGCGGCCAAAAGCTCCGACTTCGAGCT  CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGANCG CGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATC TGAACATGTTGTCAAAAAAA]
[+] EMBL C19114               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTCACCTNCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT  CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CCGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGANGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCNGGNATTAAGNTTAaaaaa                                                                                                              ]
[+] EMBL C19125               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGNTCGCGCCCCACNGTAGACGCNTGGGCGGCCAACAGCTCCGACTTCGAGCT  CGCTTTCGTCGCCGCCATGACCAACTTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCANGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGA                                                                                                                                     ]
[+] EMBL BI796745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccg AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATCTTGAAAAAAA           ]
[+] EMBL BI796648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCC AATTAAATTACCTAGCTAGGCC AATGTATTGTGTTTTTTAACCTATGGGAGC AGATAAATTATC TGAAAAA             ]


>consensus_15509#0 CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTA GTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGAT TCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCGGGTCGTGGCGCANTCAGGCGGG ACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAA AGTGCAGGAGACGTCCGTCGCCGTCGGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTC GTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAG GACCACCCGAACAACCTCTCCCTCGCCGGCGACGGCTTCGACACGGTCATCAAGGCCAGG GCGGCCGTCGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGCGGACATCCTGGTC ATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGG AGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCG TTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATG ATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGG ATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCG GCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGC GCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGAC CAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGC TCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAG ACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGACGCCGCCGC GGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAA TTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACT AGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTA TTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTG TTTTTTAACTATGGGAGCAAGATAAATTATCTGAACAAAAAGTCAAAAAAA



consensusID : consensus_15509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 675
fasta sequence
                              [ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC-ACCGTCGACGCCTGGGCGGCCAA-CAGCTCCGACTTCG-AGCTCG-CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC-GGC-GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAAAAAAAAAAAA]

[+] EMBL BI796482             [ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC ACCGTCGACGCCTGGGCGGCCAA CAGCTCCGACTTCG AGCTCG CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCCAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCAaaaaaaaaa                                                                                                                  ]
[-] EMBL C22707               [                                                                                                                                                                                                  CTCCGACGACCCGTNGCGCCCCAACCGTCGACNCTTGGGCGGCAAANAAGCTCCGACTTCGNAGCTCGCCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTNAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGAT                                                 ]
[+] EMBL C19113               [                                                                                                                                                                                                                                                                                                              TCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCNCCCGCGGNCGGCATGGGCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAA          ]
[+] EMBL BI797861             [                                                                                                                                                                                                                                                                                                                                                                                                       GACGGCGGTCAGCAGGCAGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAaaa                                                                                                                                      ]
[+] EMBL AU029760             [                                                                                                                                                                                                                                                                                                                                                                                                                             ACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCNNCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTNGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATNTTGGAANCCNGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTCATTTTCAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15509#1 ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCG AGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCG CGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCC GACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAAC AGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTC AAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCC CGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCT CAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACA ACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGA TTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATT GTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCA AAAAAAAAAAAAAAA



consensusID : consensus_15509#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 489
fasta sequence
                              [CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG-ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC-AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA]

[+] EMBL AU075994             [CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA]
[+] EMBL C19119               [                                                                                                                                     AGGGNATGGGCCTCTTNACCTCCGACNAGTTGCTCTACTCCGACGAACCCGTCGCGCCCCACCGTCGACCCTTGGGCGGCCAAAAAGCTCCGACTTCGAGCTCNCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTG AANCCCCGCGGGCGGCATNGGC TCGGCACGACGACGGCGGTCANCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAANTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAnn]


>consensus_15509#2 CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGA CCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTC GTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGAC CGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCTCGCCTTC GTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAAC ATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCAC GACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGC TGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAA AAAAAAAAA



consensusID : consensus_15509#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA]

[+] EMBL C22699               [GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA]


>consensus_15509#3 GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTG NGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCG CGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTT CTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAA CAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACAC GGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTN CGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGT ACGGCGTTGAACTTCGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTA 60
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      GTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGAT 120
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      TCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCGGGTCGTGGCGCANTCAGGCGGG 180
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      ACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAA 240
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      AGTGCAGGAGACGTCCGTCGCCGTCGGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTC 300
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      GTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAG 360
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      GACCACCCGAACAACCTCTCCCTCGCCGGCGACGGCTTCGACACGGTCATCAAGGCCAGG 420
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      GCGGCCGTCGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGCGGACATCCTGGTC 480
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      ATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGG 540
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      AGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCG 600
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      TTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATG 660
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      ------------------------------------------------------------
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      ATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGG 720
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      -ACCGACATGATCGCTTTATCTCGGCG-CACACGTGGGTTCGCGCACTGCGGCACGTTCG 58
consensus_15509#2      --------------------CCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 36
consensus_15509#0      ATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 776
consensus_15509#3      ---GGAGCTGGGATTCGGATTCTGGTGGTG-ATGTTGGCGGTCGCNCGCCGGG---AGCN 53
                                              *  *    * *  **    ***    * *      * 

consensus_15509#1      CGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGA-CTGGACCCGGTGAC 117
consensus_15509#2      GGCGGCGTGCCCGGCCGGCG---TGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGAC 93
consensus_15509#0      GGCGGCGTGCCCGGCCGGCG---TGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGAC 833
consensus_15509#3      ACNGNTGNGCGCANTCAGNGC--GGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGAC 111
                          *  *    *   *   *    ****    *   *    **   *   **   * ***

consensus_15509#1      --CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 175
consensus_15509#2      G-CCGCGCGCNTTCGACAACCAGTA-TTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 151
consensus_15509#0      G-CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 892
consensus_15509#3      CATCGTGCGCGACGGGTGACCAAGA--------AAGTGCAGGAGACGTCCGTCGCCGTCG 163
                          ** ****    *   ****  *        *  * *** **  *   * *  * ** 

consensus_15509#1      CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 234
consensus_15509#2      CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 210
consensus_15509#0      CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 951
consensus_15509#3      GCCACCGTCCGC--CTCTTCTTCCACGACTGCTT-CGTCGAGGGATGCGACGCGTCGGTG 220
                        *  *   * *   **** ** * ***** ***  ** *      * ****** * ** *

consensus_15509#1      GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 290
consensus_15509#2      GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 266
consensus_15509#0      GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 1007
consensus_15509#3      ATCG-TGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCT 279
                         *    *   ** *   ** *    *  **  *  *  ***   ** *******  ** 

consensus_15509#1      CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 350
consensus_15509#2      CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 326
consensus_15509#0      CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 1067
consensus_15509#3      CGCCGGCGACGTTTTCGACACG------GTCATCAAG-GCCAGGGCGGCGTCNGACGC-- 330
                       ** ***** *     **** **      * ** **   ***  * * ***     * *  

consensus_15509#1      CTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 410
consensus_15509#2      CTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 386
consensus_15509#0      CTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 1127
consensus_15509#3      -CGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGA 389
                         *             *  *  ** * **  * **   *    *** *  ***  **   

consensus_15509#1      GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 470
consensus_15509#2      GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 446
consensus_15509#0      GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 1187
consensus_15509#3      GACGTAATTT---TCGTTTGCCGGCGGCNTTCG--------TACGGCGTTGAACTTCGGG 438
                       *  **  * *   * ***        *  ** *        * * *** **** *** * 

consensus_15509#1      AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 530
consensus_15509#2      AAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA----------------- 489
consensus_15509#0      AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 1247
consensus_15509#3      AA---------------------------------------------------------- 440
                       **                                                          

consensus_15509#1      GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 590
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 1307
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATT 650
consensus_15509#2      ------------------------------------------------------------
consensus_15509#0      CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACAAAAAGTCAAA 1367
consensus_15509#3      ------------------------------------------------------------
                                                                                   

consensus_15509#1      TTCATCTGCAAAAAAAAAAAAAAAA 675
consensus_15509#2      -------------------------
consensus_15509#0      AAAA--------------------- 1371
consensus_15509#3      -------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)