These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1746 fasta sequence [GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAGCAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACGCCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGCCGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCGGTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCGCGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTCCACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTTCTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACGCTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATACATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCGGTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATGAAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTGGAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAACTCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATCTGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACCACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCGTTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACATCCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGCTTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGGATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACTGCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTGTTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATGCGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCGTTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTACCCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACCAACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTCTGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGAGAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGATTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAATAACACTTCAA] [+] EMBL AK060598 [GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAGCAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACGCCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGCCGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCGGTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCGCGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTCCACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTTCTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACGCTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATACATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCGGTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATGAAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTGGAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAACTCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATCTGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACCACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCGTTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACATCCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGCTTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGGATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACTGCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTGTTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATGCGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCGTTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTACCCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACCAACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTCTGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGAGAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGATTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAATAACACTTCAA] consensusID : consensus_1551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAGCAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACNCCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAACCGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNGGTGGCNANCGTNAATGGCTACCTGGGTNANGTCGCCAAATGACACGGCTCGCCGACCGCGCGACCCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAACCCTACTACNCCNCNTTCCNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTCCCTTCTCCCTTCTCGGATGGACTNGGCGATATCTGCCTGACCGTGGNGTTCGCATNGCACTCTACCNCTGTGGCTGCCCCTCAACTCNCNAACCCNTCCCTTGTGGCNCCCGTNCACCCANNCATNTTNCTCNCCNCCN] [+] EMBL AA753066 [ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAGCAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACNCCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAACCGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNGGTGGCNANCGTNAATGGCTACCTGGGTNANGTCGCCAAATGACACGGCTCGCCGACCGCGCGACCCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAACCCTACTACNCCNCNTTCCNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTCCCTTCTCCCTTCTCGGATGGACTNGGCGATATCTGCCTGACCGTGGNGTTCGCATNGCACTCTACCNCTGTGGCTGCCCCTCAACTCNCNAACCCNTCCCTTGTGGCNCCCGTNCACCCANNCATNTTNCTCNCCNCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1551#0 ----GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAG 56 consensus_1551#1 ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAG 60 *********** *********************** * ** ** **** ******* consensus_1551#0 CAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACG 116 consensus_1551#1 CAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACN 120 ***** ************************** ******** ***************** consensus_1551#0 CCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGC 176 consensus_1551#1 CCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAAC 180 ************** *********** ** ***** ******************* ** * consensus_1551#0 CGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCG 236 consensus_1551#1 CGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNG 240 ******** ******************** ** ********** **** ******* * * consensus_1551#0 GTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCG 296 consensus_1551#1 GTGGCNANCGTNAATGGCTACCTGGGTNANGTCG-CCAAATGACACGGCTCGCCGACC-G 298 ***** * *** * ************* * **** ********* ************* * consensus_1551#0 CGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTC 356 consensus_1551#1 CGCGAC-CCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAAC-CCTACTACNCCNCNTTC 356 ****** ******* ***** * *************** ******** ** * *** consensus_1551#0 CACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTT 416 consensus_1551#1 CNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTC-CCTTCTCCCTT 415 * ************* ***** ******* ****************** *********** consensus_1551#0 CTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACG 476 consensus_1551#1 CTCGGATGGAC-TNGGCGAT-ATCTGCCTGACCGTGGNGTTCGCATNGCA-CTCTAC-CN 471 *********** * ****** **************** ****** * *** ****** * consensus_1551#0 CTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATAC 536 consensus_1551#1 CTGTGGCTGCCCCTCAA--CTCNCNAACCCNTCCCTTGTGGCNCCCG-TNCACCC-ANNC 527 ********** * **** * * * *** ** ** ***** **** * ** ** * * consensus_1551#0 ATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCG 596 consensus_1551#1 ATNTTNCTCNCCNCCN-------------------------------------------- 543 ** * *** ** ** consensus_1551#0 GTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATG 656 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 AAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTG 716 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 GAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAAC 776 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATC 836 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACC 896 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 ACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCG 956 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACAT 1016 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 CCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGC 1076 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGG 1136 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 ATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACT 1196 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 GCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTG 1256 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATG 1316 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 CGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCG 1376 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTAC 1436 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 CCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACC 1496 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 AACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTC 1556 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGA 1616 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 GAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGA 1676 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 TTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAAT 1736 consensus_1551#1 ------------------------------------------------------------ consensus_1551#0 AACACTTCAA 1746 consensus_1551#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||