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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1320 fasta sequence
[TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG-AATGCAAACAGCTTATT-GCCCGCATTT-TTGTCAACAATCCATTGAGGAGAATCACGATGAA-GGAAA-TAAAGAGCCACCC--GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC-GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA-GAAGAGAACGA-GGAAGA-GGA-GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT-GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC-GGCTTACTATGGAACT-GCGGTGTAT-GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACA-TGTCAGCAATTGTACAGTATATTATTGGAAAAA]
[+] EMBL CB656574 [TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTC ]
[+] EMBL CA998915 [ AACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAAATGC AACAGCTTATT GCCCGCATTT TTGT ]
[+] EMBL CF312889 [ AGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACA ]
[-] EMBL CB656575 [ GCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGGACCTACATATTAAGCGTATGCTATGTACTTGG ]
[+] EMBL AK070407 [ AAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACA TGTCAGCAATTGTACAGT ]
[-] EMBL CB653194 [ GCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCCCCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTTTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCCCT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAA ]
[+] EMBL C22474 [ CAAACAGTTTATT GCCCGCATTT TTNTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGNTTCTTGAAGAACTTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACNTAAC ]
[+] EMBL BI806168 [ CAGC TATTNGCCCGCATTTGTTGTC CCATCCCTGGAGGAGAATCACGATGAA GGAAATTAAAGA CCACCC GT GTTCTTGAAG ACCT CCCA GGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTCCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAAGAGGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTC AAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTC CT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GC ATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCCTATGCTATGTACTTGGTGAGAAACTTCTAaaaaaaa ]
[+] EMBL BI808679 [ TCACGATGAAGGGAAA TAAAGAGCCACCCCGGTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGAC CGGGTTCAGACGAGGAGGAGAAGGAAGAAGAGGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACTCGCGGTGTATCGC ATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCccaaaaaa ]
[+] EMBL OS0086A [ ACGATGAA GGAAA TAAAGAGCCACCC GTNGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTNCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCANGAAGAGAACGAGGGAAGAGGGAGGGNAGATGAGTACGTTAAGAGGNTCAAAGAGGTCCATNCGAGCNGNG GCTCCGTATGAGCTCACT GCGCATATGAAA ]
[+] EMBL C22417 [ AGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCCGGGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCG ]
[+] EMBL C22419 [ AGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACTGGCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACA ]
[-] EMBL CF312890 [ CGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCCNGTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAAaaa ]
[+] EMBL C22468 [ TACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTAaaaaaa ]
[+] EMBL C22684 [ TCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGANGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAAAAAaaaaa ]
[+] EMBL AK060576 [ GAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTG ]
[+] EMBL BI797447 [ GTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCCATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCCTATGCTATGTACTTGGTGAGAAACTTCTA CACCACACTGTCA CAATTGTACAGTATATTATTGGAAAAA]
consensusID : consensus_15522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGGTGAGTTATTTTGACCCCTTGTTGGTTT]
[+] EMBL CF304552 [GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGGTGAGTTATTTTGACCCCTTGTTGGTTT]
consensusID : consensus_15522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[NGNATCGTATGGGCCNCAGAGGCGGGCNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGGATNAGGCCAGGTATTTTTTTCANCAGCTGATCTGTGGAGTNAGCTACTGCCATCACATGCAAATATGCCATANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGGCTTAANATATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTTTNCAGATGTATGGTCCTGTGGGTGTGACT]
[+] EMBL OSS4284A [NGNATCGTATGGGCCNCAGAGGCGGGCNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGGATNAGGCCAGGTATTTTTTTCANCAGCTGATCTGTGGAGTNAGCTACTGCCATCACATGCAAATATGCCATANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGGCTTAANATATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTTTNCAGATGTATGGTCCTGTGGGTGTGACT]
consensusID : consensus_15522#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCATTGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCACGTTGNAGGAAATAAAGAGNCACC]
[+] EMBL OS1224A [TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCATTGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCACGTTGNAGGAAATAAAGAGNCACC]
consensusID : consensus_15522#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 266 fasta sequence
[GCTCCACTGCCNCATATGAAAAAGTTTGTGTGCAGCTNATTGTGTCAGATAAACCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C22418 [GCTCCACTGCCNCATATGAAAAAGTTTGTGTGCAGCTNATTGTGTCAGATAAACCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C22420 [ gCATNTGAAAAAGTTTGTGTGCAGCT ATTGTGT AGATAATCCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTNCCTACATNTTAAGCGTATGCTATGTACTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15522#1 -----------------GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAAC 43
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAAC 60
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 CGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAG 103
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 CGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAG 120
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 AATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTC 163
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 AATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTC 180
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 AAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGG 223
consensus_15522#2 ---------------------------------NGNATCGTATGGGCCNCAG-AGGCGGG 26
consensus_15522#0 AAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGG 240
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 GAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGG-ATGAGGCCAGGTATTT 282
consensus_15522#2 CNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGG-ATNAGGCCAGGTATTT 85
consensus_15522#0 GAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGG-ATGAGGCCAGGTATTT 299
consensus_15522#4 -------------------------------GCTCCACTGCCNCATATGAAAAAGTTTGT 29
consensus_15522#3 ----------TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCAT 50
* * * *
consensus_15522#1 CTTTCAGCAGCTGATC-TGTGGAGTGAGCTACTGCCAT-----CACATGCAAATATGCCA 336
consensus_15522#2 TTTTCANCAGCTGATC-TGTGGAGTNAGCTACTGCCAT-----CACATGCAAATATGCCA 139
consensus_15522#0 CTTTCAGCAGCTGATC-TGTGGAGTGAGCTACTGCCAT-----CACATGCAAATATGCCA 353
consensus_15522#4 GT----GCAGCTNATTGTGTCAGATAA---ACCGGCTT-----ACTATGGAACTGCGGTG 77
consensus_15522#3 -TGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTT 109
* ** * * * * * **
consensus_15522#1 TAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAAGA 395
consensus_15522#2 TANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAANA 198
consensus_15522#0 TAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAAGA 412
consensus_15522#4 TATGCAATTTTCGCTGTA-AATTTGCTTCTGTTTGGC------GTTTCTTCG-TGTAACA 129
consensus_15522#3 TACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGC 169
** * * * * * * ** * * *
consensus_15522#1 TATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 455
consensus_15522#2 TATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 258
consensus_15522#0 TATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 472
consensus_15522#4 TAACTTACTT-GGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTG--TAAGTACCTA 186
consensus_15522#3 AAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATT-ACGTCCACATATC 228
* * * * ** * * * *
consensus_15522#1 GGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTA-TGATGGAAAGGTG 514
consensus_15522#2 GGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTT 318
consensus_15522#0 GGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTA-TGATGGAAAGCTT 531
consensus_15522#4 CATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAA 246
consensus_15522#3 TGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCAC 288
** * * * * **
consensus_15522#1 AGTTATTTTGACCCCTTGTTGGTTT----------------------------------- 539
consensus_15522#2 TNCAGATGTATGGTCCTGTGGGTGTGACT------------------------------- 347
consensus_15522#0 -GCAGATGTATGGTCCTGT-GGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCAT 589
consensus_15522#4 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 266
consensus_15522#3 GTTGNAGGAAATAAAGAGNCACC------------------------------------- 311
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 TTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGC 649
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 AATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGCA 709
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 TTTTTGTCAACAATCCATTGAGGAGAATCACGATGAAGGAAATAAAGAGCCACCCGTGGT 769
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 TCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGG 829
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 ACAACTCCGTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAG 889
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 AAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACG 949
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 AGGAGGAGAAGGAAGAGGAAGAGAGGCCAGAAGAGAACGAGGAAGAGGAGGAAGATGAGT 1009
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 ACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACTGCGCA 1069
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 TATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCCGGCTTACTATGGAACTGCGGT 1129
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 GTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTA 1189
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 CTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGC 1249
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 ------------------------------------------------------------
consensus_15522#2 ------------------------------------------------------------
consensus_15522#0 GTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACATGTCAGCAATTGTACAGTATAT 1309
consensus_15522#4 ------------------------------------------------------------
consensus_15522#3 ------------------------------------------------------------
consensus_15522#1 -----------
consensus_15522#2 -----------
consensus_15522#0 TATTGGAAAAA 1320
consensus_15522#4 -----------
consensus_15522#3 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||