These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1320 fasta sequence [TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG-AATGCAAACAGCTTATT-GCCCGCATTT-TTGTCAACAATCCATTGAGGAGAATCACGATGAA-GGAAA-TAAAGAGCCACCC--GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC-GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA-GAAGAGAACGA-GGAAGA-GGA-GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT-GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC-GGCTTACTATGGAACT-GCGGTGTAT-GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACA-TGTCAGCAATTGTACAGTATATTATTGGAAAAA] [+] EMBL CB656574 [TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTC ] [+] EMBL CA998915 [ AACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAAATGC AACAGCTTATT GCCCGCATTT TTGT ] [+] EMBL CF312889 [ AGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACA ] [-] EMBL CB656575 [ GCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGGACCTACATATTAAGCGTATGCTATGTACTTGG ] [+] EMBL AK070407 [ AAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGCTTGCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACA TGTCAGCAATTGTACAGT ] [-] EMBL CB653194 [ GCAGATGTATGGTCCTGTGGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAG AATGCAAACAGCTTATT GCCCGCATTT TTGTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCCCCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTTTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCCCT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAA ] [+] EMBL C22474 [ CAAACAGTTTATT GCCCGCATTT TTNTCAACAATCCATTGAGGAGAATCACGATGAA GGAAA TAAAGAGCCACCC GTGNTTCTTGAAGAACTTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACNTAAC ] [+] EMBL BI806168 [ CAGC TATTNGCCCGCATTTGTTGTC CCATCCCTGGAGGAGAATCACGATGAA GGAAATTAAAGA CCACCC GT GTTCTTGAAG ACCT CCCA GGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTCCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAAGAGGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTC AAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTC CT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GC ATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCCTATGCTATGTACTTGGTGAGAAACTTCTAaaaaaaa ] [+] EMBL BI808679 [ TCACGATGAAGGGAAA TAAAGAGCCACCCCGGTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGAC CGGGTTCAGACGAGGAGGAGAAGGAAGAAGAGGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACTCGCGGTGTATCGC ATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCccaaaaaa ] [+] EMBL OS0086A [ ACGATGAA GGAAA TAAAGAGCCACCC GTNGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTNCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCANGAAGAGAACGAGGGAAGAGGGAGGGNAGATGAGTACGTTAAGAGGNTCAAAGAGGTCCATNCGAGCNGNG GCTCCGTATGAGCTCACT GCGCATATGAAA ] [+] EMBL C22417 [ AGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCCGGGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCG ] [+] EMBL C22419 [ AGCCACCC GTGGTTCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAA CCATGTACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGNGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACTGGCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACA ] [-] EMBL CF312890 [ CGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCCNGTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAGAAAaaa ] [+] EMBL C22468 [ TACTACAGGAGGGACAACTCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTAaaaaaa ] [+] EMBL C22684 [ TCC GTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACGANGAGGAGAAGGAAGAGGAAGAGAGGCCA GAAGAGAACGA GGAAGA GGA GGAAGATGAGTACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTGAAAAAaaaaa ] [+] EMBL AK060576 [ GAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACT GCGCATATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTACTTGGTG ] [+] EMBL BI797447 [ GTGTAGATAATCC GGCTTACTATGGAACT GCGGTGTAT GCCATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCCTATGCTATGTACTTGGTGAGAAACTTCTA CACCACACTGTCA CAATTGTACAGTATATTATTGGAAAAA] consensusID : consensus_15522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGGTGAGTTATTTTGACCCCTTGTTGGTTT] [+] EMBL CF304552 [GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAGAATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTCAAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGGGAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTGTGGAGTGAGCTACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGGCTTAAGATATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTATGATGGAAAGGTGAGTTATTTTGACCCCTTGTTGGTTT] consensusID : consensus_15522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [NGNATCGTATGGGCCNCAGAGGCGGGCNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGGATNAGGCCAGGTATTTTTTTCANCAGCTGATCTGTGGAGTNAGCTACTGCCATCACATGCAAATATGCCATANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGGCTTAANATATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTTTNCAGATGTATGGTCCTGTGGGTGTGACT] [+] EMBL OSS4284A [NGNATCGTATGGGCCNCAGAGGCGGGCNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGGATNAGGCCAGGTATTTTTTTCANCAGCTGATCTGTGGAGTNAGCTACTGCCATCACATGCAAATATGCCATANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGGCTTAANATATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGGGGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTTTNCAGATGTATGGTCCTGTGGGTGTGACT] consensusID : consensus_15522#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCATTGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCACGTTGNAGGAAATAAAGAGNCACC] [+] EMBL OS1224A [TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCATTGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTTTACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCACGTTGNAGGAAATAAAGAGNCACC] consensusID : consensus_15522#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 266 fasta sequence [GCTCCACTGCCNCATATGAAAAAGTTTGTGTGCAGCTNATTGTGTCAGATAAACCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22418 [GCTCCACTGCCNCATATGAAAAAGTTTGTGTGCAGCTNATTGTGTCAGATAAACCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22420 [ gCATNTGAAAAAGTTTGTGTGCAGCT ATTGTGT AGATAATCCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTNCCTACATNTTAAGCGTATGCTATGTACTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15522#1 -----------------GATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAAC 43 consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 TACGACGCGGTGAGGGACATCGGGTCGGGGAACTTCGGGGTGGCGCGGCTGATGCGCAAC 60 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 CGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAG 103 consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 CGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCATCGAGCGCGGCCACCGGATAGATGAG 120 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 AATGTGTACAGGGAGATCATCAACCACCGCTCGTTGTTTCTCCCCAACATCATTCGCTTC 163 consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 AATGTGTACAGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATTCGCTTC 180 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 AAGGAGGTGATACTGACGCTTTTTTTTCTTATGATTGTCATGGAGTTCGCAGCAGGCGGG 223 consensus_15522#2 ---------------------------------NGNATCGTATGGGCCNCAG-AGGCGGG 26 consensus_15522#0 AAGGAGGTGATACTGACGCCAACGCATCTTATGATTGTCATGGAGTTCGCAGCAGGCGGG 240 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 GAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGG-ATGAGGCCAGGTATTT 282 consensus_15522#2 CNGCTCTTCGTTCGANTCTTTNATCGTGGACGGTTCANTNAGG-ATNAGGCCAGGTATTT 85 consensus_15522#0 GAGCTGTTCGATCGAATCTGTGATCGTGGACGGTTCAGTGAGG-ATGAGGCCAGGTATTT 299 consensus_15522#4 -------------------------------GCTCCACTGCCNCATATGAAAAAGTTTGT 29 consensus_15522#3 ----------TTCTACTGAATGTTAGTAGAATTACGATCAGAGAGTATGGTCCTACTCAT 50 * * * * consensus_15522#1 CTTTCAGCAGCTGATC-TGTGGAGTGAGCTACTGCCAT-----CACATGCAAATATGCCA 336 consensus_15522#2 TTTTCANCAGCTGATC-TGTGGAGTNAGCTACTGCCAT-----CACATGCAAATATGCCA 139 consensus_15522#0 CTTTCAGCAGCTGATC-TGTGGAGTGAGCTACTGCCAT-----CACATGCAAATATGCCA 353 consensus_15522#4 GT----GCAGCTNATTGTGTCAGATAA---ACCGGCTT-----ACTATGGAACTGCGGTG 77 consensus_15522#3 -TGGCAACAATGGGCTTGTTGATGTAGCTTGCAGATGTATGGTCCTGTGGTGTNACTCTT 109 * ** * * * * * ** consensus_15522#1 TAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAAGA 395 consensus_15522#2 TANAGATTTAAAGTTGGAGAATGTNCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAANA 198 consensus_15522#0 TAGAGATTTGAAGTTGGAGAATGTTCTCTTGGATGGCAGCCCAGCTCCACGG-CTTAAGA 412 consensus_15522#4 TATGCAATTTTCGCTGTA-AATTTGCTTCTGTTTGGC------GTTTCTTCG-TGTAACA 129 consensus_15522#3 TACGTCATGCTTGTGGGAGCCTACCCATTTGAAGACCAGGACGACCCCAAGAACATTCGC 169 ** * * * * * * ** * * * consensus_15522#1 TATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 455 consensus_15522#2 TATGTAATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 258 consensus_15522#0 TATGTGATTTTGGCTACTCCAAGTCATCAGTATTGCATTCAAGACCCAAATCAGCAGTGG 472 consensus_15522#4 TAACTTACTT-GGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTG--TAAGTACCTA 186 consensus_15522#3 AAAACCATTCAGAGAATAATGTCAGTGCAATATAAGATACCAGATT-ACGTCCACATATC 228 * * * * ** * * * * consensus_15522#1 GGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTA-TGATGGAAAGGTG 514 consensus_15522#2 GGACGCCAGCATATATCGCACCAAAGGNGTAATCCCGCCGTGAGTAATGATGGAAAGCTT 318 consensus_15522#0 GGACGCCAGCATATATCGCACCAGAGGTGCTATCCCGCCGTGAGTA-TGATGGAAAGCTT 531 consensus_15522#4 CATATTAAGCGTATGCTATGTNCTTGGTGNGNNNCTTCTAAAAAAAAAAAAAAAAAAAAA 246 consensus_15522#3 TGCAGAATGCAAACAGCTTATTGCCCGNATTTTTGTCANCANTCCATTGAGGNGAATCAC 288 ** * * * * ** consensus_15522#1 AGTTATTTTGACCCCTTGTTGGTTT----------------------------------- 539 consensus_15522#2 TNCAGATGTATGGTCCTGTGGGTGTGACT------------------------------- 347 consensus_15522#0 -GCAGATGTATGGTCCTGT-GGTGTGACTCTTTACGTCATGCTTGTGGGAGCCTACCCAT 589 consensus_15522#4 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 266 consensus_15522#3 GTTGNAGGAAATAAAGAGNCACC------------------------------------- 311 consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 TTGAAGACCAGGACGACCCCAAGAACATTCGCAAAACCATTCAGAGAATAATGTCAGTGC 649 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 AATATAAGATACCAGATTACGTCCACATATCTGCAGAATGCAAACAGCTTATTGCCCGCA 709 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 TTTTTGTCAACAATCCATTGAGGAGAATCACGATGAAGGAAATAAAGAGCCACCCGTGGT 769 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 TCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGG 829 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 ACAACTCCGTGCCTTCCTTCTCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAG 889 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 AAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTGGAGCGACGCGGGTTCAGACG 949 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 AGGAGGAGAAGGAAGAGGAAGAGAGGCCAGAAGAGAACGAGGAAGAGGAGGAAGATGAGT 1009 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 ACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACTGCGCA 1069 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 TATGAAAAAGTTTGTGTGCAGCTATTGTGTAGATAATCCGGCTTACTATGGAACTGCGGT 1129 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 GTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTTTCTTCGTGTAACATAACTTA 1189 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 CTTGGGGGCGCTTGGACTTCAATTGTCTGATTATGTTTTGTAAGTACCTACATATTAAGC 1249 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ------------------------------------------------------------ consensus_15522#2 ------------------------------------------------------------ consensus_15522#0 GTATGCTATGTACTTGGTGAGAAACTTCTAGCACCACATGTCAGCAATTGTACAGTATAT 1309 consensus_15522#4 ------------------------------------------------------------ consensus_15522#3 ------------------------------------------------------------ consensus_15522#1 ----------- consensus_15522#2 ----------- consensus_15522#0 TATTGGAAAAA 1320 consensus_15522#4 ----------- consensus_15522#3 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||