These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1103 fasta sequence [CATCCCGGCCGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG-TTTGTG-CGCT-GTT-CCTTGCCCTC-AATGTGCTC-TTCA-CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG-ATCG-ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC-TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCACTTGTGTTAAAAAAAAAAAAAAAAAAAAACCCCCGGAAATGTTATTCGTTGGGATGATTGTCAACCAATTTTGTTTTTCTTCCCTCGGGGGGGGCCGGGCCCCATTCCCCTTATGTGGGTGTTTCCCCCCTCCTGGCCGTTTTTAAAATCTGACTGGAAACCCTGGTTCCCATTTATCCTTTAACATGCCTCTTTTCGTTGGTTATTGCAGAGGCCCACCGCCCCTTCCAAATGCCAACCAAGGAAGGGACCGCCTTGGGGCTATAGCCGGGTTGGGGTCGCGTGACTTCTTTCGGCCACCCCCTGTTATTTGCCTTATCCCTGGAGTCCC] [+] EMBL CF290928 [CATCCCGGCCGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCG ] [+] EMBL CF291056 [ GCCGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTGCAGGTATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTC ACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACG ] [+] EMBL AK103618 [ CGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTC ] [+] EMBL CF291694 [ CGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGT GGGTGGA GGAATAA TGCCCG ATCG ACGC CT AA CTGA TG GTGCCCACG GCT AA CTG TGAAGCTGAA ATCGG GTGCCGGA A CGAGCAG GC TGCCCG TG TGGGTGGCCTCGTC ACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCG ] [+] EMBL OSR06222A [ GCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTACAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGNCGCCTCCGTCGCCGGCGTCGGGTGGAGGGANTAAGTNCCCGAATCG ACGNGCTGAAGCTGAGCGTGTtc ] [+] EMBL OSS2860A [ AATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTNCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTNCCCG ATCG ACGCGCTGAAGCTGAGCGTGTTCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTTCCGGAGAGCGAGCAGTTCTTGCCC ] [+] EMBL CA755383 [ AAAGCAGCTCCAGCTTCTTCTGATCGATCGATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGTAGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGG TTTGTG CGCT GTT CCTTGCCCTC AATGTGCTC TTCA CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCACTTGTGTTAATAAAAAAAA ] [+] EMBL AU082154 [ AGGTTTTGTGCCNCTGGTTCCCTTGCCCNCAAATGTGTTCTTTNACCCATGCAGATGGGTNCAGTAGTGCAGGCATGCGAGNCCTACTGCCCCACACNGACGCCGCCGGTNACGCCGCCTCCGTCGCCNCCGTCGGGTGGAGGGAATAAGTGCCCG ATCGNACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTNAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCACTTGTGTTAAAAAA ] [+] EMBL BE040683 [ T CGTTGCTCTG AATATGGTC ATCT CCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCG ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGGCAAATAAAAGTTTCTTCCACTTGTGTTGAAAAAAAAAAAAAAAAAAAACCCCCGGAAATGTTATTCGTTGGGATGATTGTCAACCAATTTTGTTTTTCTTCCCTCGGGGGGGGCCGGGCCCCATTCCCCTTATGTGGGTGTTTCCCCCCTCCTGGCCGTTTTTAAAATCTGACTGGAAACCCTGGTTCCCATTTATCCTTTAACATGCCTCTTTTCGTTGGTTATTGCAGAGGCCCACCGCCCCTTCCAAATGCCAACCAAGGAAGGGACCGCCTTGGGGCTATAGCCGGGTTGGGGTCGCGTGACTTCTTTCGGCCACCCCCTGTTATTTGCCTTATCCCTGGAGTCCC] [-] EMBL CF291057 [ ATCG ACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGC TGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGTTTGCCTTTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTTTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTTTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTTTTCCACTTGTGTTAAAAAAAAAAAAAA ] [-] EMBL CF290927 [ TTCTCAACTACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTTTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCATTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCGCTTGTGTTAATAAAAAAA ] [+] EMBL AU165091 [ CCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGCATACCGTCAAATAAAAGTTTCTTCCACTTGTGTTAAAAA ] consensusID : consensus_15550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [CCGCCTCCGTCGCCGCCGTCTGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGTGGGGGTGCCGGCGAGCGAGGAGTGCTGCCCGCTGCTGGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGTCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCATGCTGCTCCTTAACTACTGTCACAAGACCTGCCCTTCCGACTTCTTCTGCCCACTCATTTGATTCTTAATCTTTATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTCGCATGGTTTATTCTGTGTGTTGCTCGCGTGTATACGTTTGTACTTATCTTTTATCTTTCGTCGTTATTACGGTTGACCTATTTTTGTCCTTTTATTTCTGTCTCTGAATCTCTTGGTCGCTGTCCCTGTGTTATTATTTTGTCGCCCTCGCTCTCCTGCTTCTTTTTTCTCTCTGCTCCCCCATTTTTTTTTTTCTCTTGTCCCTTTGGTTGTCCTCCCCATCCTGTTGCTGAGTTTCTGTGGCGGTTTTTTCTGTTTCCTTTCTGGTCCTCGCGGGTCTTAGGACTCTTCCTCGGTATTGTTGTTCGTTCTCCCACCCGCTTAATGCGTTTTTTCTTTTTCTCTCATACTTCATGCCACTACTTTTCCTTTTTTGTATTGGCTTAGGCGTCGGAGTCGTTGTATTCCTTCCCGGTAACTTCTATTTTAAGTTTTCAAAT] [+] EMBL BE041032 [CCGCCTCCGTCGCCGCCGTCTGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGTGGGGGTGCCGGCGAGCGAGGAGTGCTGCCCGCTGCTGGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGTCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCATGCTGCTCCTTAACTACTGTCACAAGACCTGCCCTTCCGACTTCTTCTGCCCACTCATTTGATTCTTAATCTTTATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTCGCATGGTTTATTCTGTGTGTTGCTCGCGTGTATACGTTTGTACTTATCTTTTATCTTTCGTCGTTATTACGGTTGACCTATTTTTGTCCTTTTATTTCTGTCTCTGAATCTCTTGGTCGCTGTCCCTGTGTTATTATTTTGTCGCCCTCGCTCTCCTGCTTCTTTTTTCTCTCTGCTCCCCCATTTTTTTTTTTCTCTTGTCCCTTTGGTTGTCCTCCCCATCCTGTTGCTGAGTTTCTGTGGCGGTTTTTTCTGTTTCCTTTCTGGTCCTCGCGGGTCTTAGGACTCTTCCTCGGTATTGTTGTTCGTTCTCCCACCCGCTTAATGCGTTTTTTCTTTTTCTCTCATACTTCATGCCACTACTTTTCCTTTTTTGTATTGGCTTAGGCGTCGGAGTCGTTGTATTCCTTCCCGGTAACTTCTATTTTAAGTTTTCAAAT] consensusID : consensus_15550#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 744 fasta sequence [TAGCTAGCTAGCAGCAGCAAAATATACTATATCATCATCAATTAATTAAGCTAGTACAATTAAGAAGTAGCTAAGTAGTCCAATACGATGGGCGGCGGCAAGAATAAGGTGCAGGTTTGTGCGGTGTTCGTCGTTGCTCTGAATATGGTCATCTCCATGCAGATGGGTGCAGTGCAGGCATGCGAGCCCTACTGCCCCACCCCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGT-GGGGGTGCCGGCGAGCGAGGAGTGCT-GCCCGCTGCT-GGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCAT-ACATATATACTTATCTCGATCTATCAGT-GTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTT-GTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGTGTACGTACGTACTACTTGTGCTAAAAAAAA] [+] EMBL AK062654 [TAGCTAGCTAGCAGCAGCAAAATATACTATATCATCATCAATTAATTAAGCTAGTACAATTAAGAAGTAGCTAAGTAGTCCAATACGATGGGCGGCGGCAAGAATAAGGTGCAGGTTTGTGCGGTGTTCGTCGTTGCTCTGAATATGGTCATCTCCATGCAGATGGGTGCAGTGCAGGCATGCGAGCCCTACTGCCCCACCCCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGT GGGGGTGCCGGCGAGCGAGGAGTGCT GCCCGCTGCT GGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCAT ACATATATACTTATCTCGATCTATCAGT GTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTT GTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGTGTA ] [+] EMBL BE040899 [ TGCAGTGCAGGCATGCGAGCCCTACTGCCCCACCCCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGT GGGGGTGCCGGCGAGCGAGGAGTGCT GCCCGCTGCT GGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGGGTCATAACATATATACTTATCTCGATCTATCAGTGGGGATTATTGATGATCAGATCGATCATCT ATATATGTATCTTGGTTA TTTAATGCGTACTGgc ] [+] EMBL BE041103 [ TGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGT GGGGGTGCCGGCGAGCGAGGAGTGCT GCCCGCTGCT GGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCAT ACATATATACTTATCTCGATCTATCAGT GTGATTATTGATGATCAGATCGATCATCT ATATATGTATCTT GTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGTGTACGTACGTACTACTTGTGCTAAAAAAAA] [-] EMBL CB964657 [ CGTGTTCTCCATCGTGCTCATCCTGCTCTAGCTCATGGT GGGGGTTCCGTCGAGCGAGGAGTTCTGGCCCGCTGCT GGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCTACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCTGA TGTTGGAGCCCGCTCATCTGATTCTTAATCTTCATTACCACCACTACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTACTCTGTGTGTTGCAGTTGTGTCAT ACATATATACTTATCTCGATCTATCAGT GTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTT GTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGT ] [+] EMBL BE229577 [ cgagCCTGCTCAAGCTCAAGGTGGGGGGTGCCGGCGAGCGAGGAGTGCT GCCCGCTGCTGGGGGGGGCTCGTCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGT CCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTG CCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCAT ACATATATACTTATCTCGATCTMTCAGT GTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTY GTTATTTTAAaaaaa ] consensusID : consensus_15550#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [GGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCATACATATATACTTATCTCGATCTATCAGTGTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTTGTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGTGTA] [+] EMBL AK063037 [GGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCATCTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTAGTCTGTGTGTTGCAGTTGTGTCATACATATATACTTATCTCGATCTATCAGTGTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTTGTTATTTTAATGCGTACTGTCAAATAAAAGTTTCCTCCAGTGTA] consensusID : consensus_15550#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 367 fasta sequence [CAACATCCTGGGCATCAATTTCAACATCCCCGTGGATTTTTTTTTCCTTTTCAAATAATGCCACAAGACCTGCCCCTCCGATTTCACCTGCCCTTTTTAAATTAATGGATCCTCCGATCCCTTAATTACCATACCATTACCCCATGCATCAATATCCATATATATATAAACCCTTTCGCAGGGACTTATACTATGTTTTGTCAAACAAAAAAATGTGTCGAACGATCGATTTATCCCTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTAAACCGTCAAATAAAAGTTTTTTCCCCTTGTGTTAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF291695 [CAACATCCTGGGCATCAATTTCAACATCCCCGTGGATTTTTTTTTCCTTTTCAAATAATGCCACAAGACCTGCCCCTCCGATTTCACCTGCCCTTTTTAAATTAATGGATCCTCCGATCCCTTAATTACCATACCATTACCCCATGCATCAATATCCATATATATATAAACCCTTTCGCAGGGACTTATACTATGTTTTGTCAAACAAAAAAATGTGTCGAACGATCGATTTATCCCTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTAAACCGTCAAATAAAAGTTTTTTCCCCTTGTGTTAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CA756402 [ GTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCACTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15550#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [TACTATATCATCNTCAATNAATTAAGCTAGTACNATTAAGAAGTAGCTAAGTAGTCCAATACGNTGGGCGGCGGCAAGAATAAGGTGCAGGTTTGTGCGGTGTTCGTCGTTGCTCTGAATATGGTCATCTCCATGCNNATGGGTGCAGTNCNNGCTTGCNAGCCCTACTGCCCCACCCCGACGCCGCCNGNNACGTNTCCTCTTTCTCANCGTCCGGTTNNNCCNTNCCTCCCTNANNTTTTTATNC] [+] EMBL BE228272 [TACTATATCATCNTCAATNAATTAAGCTAGTACNATTAAGAAGTAGCTAAGTAGTCCAATACGNTGGGCGGCGGCAAGAATAAGGTGCAGGTTTGTGCGGTGTTCGTCGTTGCTCTGAATATGGTCATCTCCATGCNNATGGGTGCAGTNCNNGCTTGCNAGCCCTACTGCCCCACCCCGACGCCGCCNGNNACGTNTCCTCTTTCTCANCGTCCGGTTNNNCCNTNCCTCCCTNANNTTTTTATNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 CATCCCGGCCGATCGAGCTAGCAAATATCAAAAAGCAGCTCCAGCTTCTTCTGATCGATC 60 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 GATCGAGCTGAGCTATAGGCAGTAGCTGCTAATTAAGCTAATTAATTGCTAAGCAGTAGT 120 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 AGAGCTAGCTAATTAATTAAGATGGCCGGCAAGAAGGTGCAGGTTTGTGCGCTGTTCCTT 180 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 GCCCTCAATGTGCTCTTCACCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTAC 240 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ---------------------------CCGCCTCCGTCGCCGCCGTCTGGTGGAGCGAAT 33 consensus_15550#3 -------------------GGATCGCACGGCCCTCGT-GCCGGCGACGCATCATTCAAAT 40 consensus_15550#0 TGCCCCACACCGACGCCGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGGGAAT 300 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 AAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAG 93 consensus_15550#3 TTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGC-CTACCATGGTGGTGACG-----G 94 consensus_15550#0 AAGTGCCCGATCGACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTGCTGAAG 360 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 CTCAAGGTGGGGGTGCCGGCGAGCGAGGAGTGCTGCCCGCTGCTGGGGGGGCTCGTCGAC 153 consensus_15550#3 GTGACGGAATAAGTGCC--CGATCGACGCG------CTGAAGCTGGGCGTGTGCGCCAAC 146 consensus_15550#0 CTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGCTGCCCGTTGCTGGGTGGCCTCGTCGAC 420 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 CTCGACGCCGCCGTCTGCCTCTGCACCGTCATCAAGGCCAACGTCCTCGGCATCAACATC 213 consensus_15550#3 GTG-----CTCAACCTGCTCAAGC-------TCAAGGCCAACGTCCTCGGCATCAACATC 194 consensus_15550#0 CTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTC 480 consensus_15550#4 --------------------------------------CAACATCCTGGGCATCAATTTC 22 consensus_15550#2 ------------------------------------------------------------ consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 AACGTCCCCGTCGACCTCATGCTGCTCCTTAACTACTGTCACAAGACCTGCCCTTCCGAC 273 consensus_15550#3 AACGTCCCCGTCGACCTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGAC 254 consensus_15550#0 AACATCCCCGTCGATCTCTCTCTCCTTCTCAACTACTGCCACAAGACCTGCCCCTCCGAC 540 consensus_15550#4 AACATCCCCGTGGATTTTTTTTTCCTTTTCAAATAATGCCACAAGACCTGCCCCTCCGAT 82 consensus_15550#2 ---------------TAGCTAGCTAGCAGCAGCAAAATATACTATATCATCATCAATTAA 45 consensus_15550#5 ---------------------------------------TACTATATCATCNTCAATNAA 21 ** * * * * * consensus_15550#1 TTCTTCTG--CCCACTCATTTGATTC-----TTAATCTTTATTACCACCACAACCCTAGC 326 consensus_15550#3 TTCTCCTG--CCCACTCATCTGATTC-----TTAATCTTCATTACCACCACAACCCTAGC 307 consensus_15550#0 TTCACCTGCCCTCTCTAAATTAATCGATCCTCCGATCCCT-TAATTACCATACCATTACA 599 consensus_15550#4 TTCACCTGCCCTTTTTAAATTAATGGATCCTCCGATCCCT-TAATTACCATACCATTACC 141 consensus_15550#2 TTAAGCTAGTACAATTAAGA-AGTAG-----CTAAGTAGT-CCAATACGATGG-GCGGCG 97 consensus_15550#5 TTAAGCTAGTACNATTAAGA-AGTAG-----CTAAGTAGT-CCAATACGNTGG-GCGGCG 73 ** ** * * * * * ** consensus_15550#1 TACCTAATTAAGGCTTAAGCTT-CGCATGGTTTATTCTGTGTGTTGCTCGCGTG-T-ATA 383 consensus_15550#3 TACCTAATTAAGGCTTAAGCTT-TGCATGGCTTAGTCTGTGTGTTGCAGTTGTG-TCATA 365 consensus_15550#0 CCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGT 659 consensus_15550#4 CCATGCATCAATATCCATATATATATAAACCCTTTCGCAGGGACTTATACTATGTTTTGT 201 consensus_15550#2 GCAAGAAT-AAGGTGCAGGTTTGTGCGG---TGTTCGTCGTTGCTCTGAATATGGTCATC 153 consensus_15550#5 GCAAGAAT-AAGGTGCAGGTTTGTGCGG---TGTTCGTCGTTGCTCTGAATATGGTCATC 129 ** ** * * * ** * consensus_15550#1 CGTTTGTACTTATCTTTTATCTTTCGTCGTTATTACGGTTGACCTATTTTTGTCCTTTTA 443 consensus_15550#3 CATATATACTTATCTCG-ATCTATCAGTGTGATTATTGATGATC-AGATCGATCATCTAA 423 consensus_15550#0 CATACATATATATGTGTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCA 719 consensus_15550#4 CAAACAAAAAAATGTGTCGAACGATCGATTTATCCCTGATATGATATGATTGATCCATCA 261 consensus_15550#2 TCCATGCAGATGGGTGCAGTGCAGGCATGCGAGCCCTACTGCCCCACCCCGACGCCGCCG 213 consensus_15550#5 TCCATGCNNATGGGTGCAGTNCNNGCTTGCNAGCCCTACTGCCCCACCCCGACGCCGCCN 189 * * * * consensus_15550#1 TTTCTGTCTCTGAATCTCTTGGTCGCTGTCCC-TGTGTTATTATTTTGTCGCCCTCGCTC 502 consensus_15550#3 TATATGTATCTTGTTATTTTAATGCGTACTGT-CAAATAAAAGTTTCCTCCAGTGTA--- 479 consensus_15550#0 GCCTGATCTCTGTATCTTGTTATTTGTATACCGTCAAATAAAAGTTTCTTCCACTTGTGT 779 consensus_15550#4 GCCTGATCTCTGTATCTTGTTATTTGTAAACCGTCAAATAAAAGTTTTTTCCCCTTGTGT 321 consensus_15550#2 GTGACGCCGCC---TCCG-TCGCCGCCGTCGGGTGGAGCGAATAAGTGCCCGATCGACGC 269 consensus_15550#5 GNNACGTNTCC---TCTT-TC-TCANCGTCCGGTTNNNCCN-----TNCCTCCCTNANNT 239 * * * consensus_15550#1 TCCTGCTTCTTTTTTCTCTCTGCTCCCCCATTTTTTTTTTTCTCTTGTCCCTTTGGTTGT 562 consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 TAAAAAAAAAAAAAAAAAAAAACCCCCGGAAATGTTATTCGTTGGGATGATTGTCAACCA 839 consensus_15550#4 TAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 367 consensus_15550#2 GCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACCTGCTCAAGCTCAAGGTGGGGGTGCC 329 consensus_15550#5 TTTTATNC---------------------------------------------------- 247 consensus_15550#1 CCTCCCCATCCTGTTGCTGAGTTTCTGTGGCGGTTTTTTCTGTTTCCTTTCTGGTCCTCG 622 consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 ATTTTGTTTTTCTTCCCTCGGGGGGGGCCGGGCCCCATTCCCCTTATGTGGGTGTTTCCC 899 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 GGCGAGCGAGGAGTGCTGCCCGCTGCTGGGGGGGCTCGTCGACCTCGACGCCGCCGTCTG 389 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 CGGGTCTTAGGACTCTTCCTCGGTATTGTTGTTCGTTCTCCCACCCGCTTAATGCGTTTT 682 consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 CCCTCCTGGCCGTTTTTAAAATCTGACTGGAAACCCTGGTTCCCATTTATCCTTTAACAT 959 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 CCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGACCT 449 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 TTCTTTTTCTCTCATACTTCATGCCACTACTTTTCCTTTTTTGTATTGGCTTAGGCGTCG 742 consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 GCCTCTTTTCGTTGGTTATTGCAGAGGCCCACCGCCCCTTCCAAATGCCAACCAAGGAAG 1019 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 CGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTCCTGCCCACTCAT 509 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 GAGTCGTTGTATTCCTTCCCGGTAACTTCTATTTTAAGTTTTCAAAT------------- 789 consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 GGACCGCCTTGGGGCTATAGCCGGGTTGGGGTCGCGTGACTTCTTTCGGCCACCCCCTGT 1079 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 CTGATTCTTAATCTTCATTACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTG 569 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 TATTTGCCTTATCCCTGGAGTCCC------------------------------------ 1103 consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 CATGGCTTAGTCTGTGTGTTGCAGTTGTGTCATACATATATACTTATCTCGATCTATCAG 629 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------------ consensus_15550#3 ------------------------------------------------------------ consensus_15550#0 ------------------------------------------------------------ consensus_15550#4 ------------------------------------------------------------ consensus_15550#2 TGTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTTGTTATTTTAATGCGTA 689 consensus_15550#5 ------------------------------------------------------------ consensus_15550#1 ------------------------------------------------------- consensus_15550#3 ------------------------------------------------------- consensus_15550#0 ------------------------------------------------------- consensus_15550#4 ------------------------------------------------------- consensus_15550#2 CTGTCAAATAAAAGTTTCCTCCAGTGTACGTACGTACTACTTGTGCTAAAAAAAA 744 consensus_15550#5 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||