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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1502 fasta sequence
[GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGGCAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC-GC-GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG-G-TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT-G-ACGCACTCGATGCCGCCGGAGAAGGCGG-AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC-AGCCGACGGACTTCCTGCCGGAC-TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG-GGGCT-CCCCGA-CGAGTACTTCGTCG-TGCTGGT-CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCNCATTTCAAAAAAAAA]
[+] EMBL AU225390 [GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGGCAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGG ]
[+] EMBL AK101524 [ AGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCT ]
[+] EMBL AK120809 [ TCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTG ]
[+] EMBL OS0495A [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCG GTTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGTGG ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCG ]
[+] EMBL AU173387 [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GCTGGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGA ]
[+] EMBL AU068227 [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCANTGNCGCGTGTC CGGCG GNTGCTGACGGNCGCGGAGACGGCGACGGCGACG GGCGCCGCGT G ACGCA ]
[+] EMBL AU068010 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGGCAGGTGTTCCGGTCGCTGGAAGGGTGGGCGANGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCNTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCNCGCCGC GGGNT CCCCGA CGAGTA ]
[+] EMBL AU062390 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCG GTTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGNTGCTGCCGNTGCTCAAGCCCGTGGAGGAGTGCTGGCAANCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTT ]
[+] EMBL AU062854 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCGNN TGCTGACGGCCGCGGAGACGGCGACGGCGA CGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGNAC TCGTCGTCGGAGATGTTCGAGCACCAGNTCCACGAGCTCCG GCGCGCGCCGGGNGGGCTNCCCCGACCGAGTACTTCGTCGTTGTTGGTCCGGGGACATGATTACCGAGAAGGCG TTCCACCGTAACAGACCATTATCAACA ]
[+] EMBL AU181619 [ AACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGA ]
[+] EMBL AK059526 [ AACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTA ]
[+] EMBL AU181316 [ CCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCAGCAGGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCA ]
[+] EMBL OSS1883A [ GCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCGGNCAGTGCCGCGTGTCCGC GCG GNTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT GNACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTTCTGGC AGCCGACGGACTTNCTGCCGGACTTCGTCGTCGGAGATGTTCGAGCACCAGGTNCACGAGCTTCGCGCGCGC CCG N GGGCT TCCCGA CGAGTA ]
[+] EMBL AU197585 [ GTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGC ]
[+] EMBL AU181317 [ TCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCNCATTTCAAAAAAA ]
[+] EMBL AU173388 [ GGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCACATTTCACAAAAAAA]
consensusID : consensus_15553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097089 [CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGTCCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGGTTCGCGGAGGCTTGCAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGGATGATCATGCCATTTGCCTTA]
[+] EMBL OSEN265 [CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGTCCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGGTTCGCGGAGGCTTGCAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGGATGATCATGCCATTTGCCTTA]
consensusID : consensus_15553#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTGGCGCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGTNTTGCTGACGNCCGCGNAGACGNCGACGGCGACGGCGNCNCGTTNACGCACTCGATGNCGCGGAGAAGCGTAGGTGTTCCGGTCGTTGAAGGGTGGGCGAGNTCGTCGTTGTGCCGGTGTCAAGCCGTGG]
[+] EMBL AU062904 [GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTGGCGCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGTNTTGCTGACGNCCGCGNAGACGNCGACGGCGACGGCGNCNCGTTNACGCACTCGATGNCGCGGAGAAGCGTAGGTGTTCCGGTCGTTGAAGGGTGGGCGAGNTCGTCGTTGTGCCGGTGTCAAGCCGTGG]
consensusID : consensus_15553#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 262 fasta sequence
[NCGGAGCGGGCTGAGGNCAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAGTAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085716 [NCGGAGCGGGCTGAGGNCAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAGTAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031077 [ TGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAAAAAAAAAAAA ]
consensusID : consensus_15553#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[GTTAACCAGACCATGATCAACACGCTCGACGGCGTCCGCGAGCAGACCGGCCGACGGCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCACCGAGGAGAACCGGCCAGGGCACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGCTGCACATGCGCATGGTCGAGAAGACGTCAGTA]
[+] EMBL AA750040 [GTTAACCAGACCATGATCAACACGCTCGACGGCGTCCGCGAGCAGACCGGCCGACGGCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCACCGAGGAGAACCGGCCAGGGCACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGCTGCACATGCGCATGGTCGAGAAGACGTCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15553#0 ------------------------------------------------------------
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTC 60
consensus_15553#0 -----------------------GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGG 37
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 GAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGT 120
consensus_15553#0 CAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTG 97
consensus_15553#3 -------------GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTG 47
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGG 42
consensus_15553#4 ---------------------------------------------------NCGGAGCGG 9
consensus_15553#2 CCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGG-TTCGCGGAGG 179
consensus_15553#0 GCAGTCATGCAGGTCGTGGGAACCGTGCGT-GTCAGTGGCTGCGG-----CGCGGTGGTG 151
consensus_15553#3 GCAGTCATGCAGGTCGTGGGAACCGTGCGT-GTCAGTGGCTGCGG-----CGCGGTGGTG 101
consensus_15553#5 ---GTTAACCAGACCATGATCAACACGCTC-GACGGCGTCCGCGAGCAGACCGGCCGACG 56
consensus_15553#1 GCTG-AGGACAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 100
consensus_15553#4 GCTG-AGGNCAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 67
consensus_15553#2 CTTGCAGGACAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 238
* *** * * * * * * * *
consensus_15553#0 GC--GCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGC--GGTGCTGACGGCCGCGGAGAC 207
consensus_15553#3 GC--GCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGT--NTTGCTGACGNCCGCGNAGAC 157
consensus_15553#5 GCT-GCCCCTGGGCCGTCTG-GACGCGCACCTGGACC--ACCGAGGAGAACCGGCCAGGG 112
consensus_15553#1 ATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 160
consensus_15553#4 ATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 127
consensus_15553#2 ATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 298
* * * * * **
consensus_15553#0 GGCGACGGCGACGCGGCGCCGCGT-GACGCACTCGATGCCGCCGGAGAAGGCGGAGGTGT 266
consensus_15553#3 GNCGACGGCGACG--GCGNCNCGTTNACGCACTCGATGNCGC-GGAGAAG-CGTAGGTGT 213
consensus_15553#5 CACATCCTCGGCA----AGTACATGTACCTCTCCGGCCGCGCTGCACATG-CGCA--TGG 165
consensus_15553#1 -ATGATCATGCCA----TTT-CGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAG 214
consensus_15553#4 -ATGATCATGCCA----TTT-CGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAG 181
consensus_15553#2 GATGATCATGCCA----TTTGCCTTA---------------------------------- 320
* * * *
consensus_15553#0 TCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGG 326
consensus_15553#3 TCCGGTCGTTG-AAGGGTGGGCGAGNTCGTCGTTG-TGCCGGTG-TCAAGCC-GTGG--- 266
consensus_15553#5 TCGAGAAGACGTCAGTA------------------------------------------- 182
consensus_15553#1 TAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTG 274
consensus_15553#4 TAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAA---------------------- 219
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 AGTGCTGGCAGCCGACGGACTTCCTGCCGGACTCGTCGTCGGAGATGTTCGAGCACCAGG 386
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 GTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 334
consensus_15553#4 ---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAA 246
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TCCACGAGCTCCGCGCGCGCGCCGCGGGGCTCCCCGACGAGTACTTCGTCGTGCTGGTCG 446
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 366
consensus_15553#4 AAAAAAAAAAAAAAAA-------------------------------------------- 262
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 GGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACG 506
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 GCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGA 566
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 CCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCG 626
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGG 686
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 GGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGG 746
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 CCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGC 806
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 GCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCG 866
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGC 926
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 ACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCG 986
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 ACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACA 1046
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCG 1106
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 AGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGG 1166
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 AGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCT 1226
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 ATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCC 1286
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAA 1346
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 ATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTA 1406
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 TCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTA 1466
consensus_15553#3 ------------------------------------------------------------
consensus_15553#5 ------------------------------------------------------------
consensus_15553#1 ------------------------------------------------------------
consensus_15553#4 ------------------------------------------------------------
consensus_15553#2 ------------------------------------------------------------
consensus_15553#0 ATGTTGAAATACAGAATTTCNCATTTCAAAAAAAAA 1502
consensus_15553#3 ------------------------------------
consensus_15553#5 ------------------------------------
consensus_15553#1 ------------------------------------
consensus_15553#4 ------------------------------------
consensus_15553#2 ------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||