These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 929 fasta sequence [CGCGG-TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA-GGGAAGGGGCTGCTCGCGGCGAAGA-CGA-CGGCGGCGAAGGCCGCCGCCGA-CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT-AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTACTTGTTGATGACAAAAAAAA] [+] EMBL AF193345 [CGCGG TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCCTCTCCCCCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCCCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGGGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTACTTGTTGATGACAAAAAAAA] [+] EMBL AU063060 [ CGG TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCNAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGNGGCAGCCGAACCACCAACGCGAGCNAGANAGGGAGAGGGAGAGGAGGAGGAGGAGCAATNGCGGGGAAGGGA GGGAAGGGGATGCTCGCGGCGAAGA GACCGGCGGCGAAG ] [+] EMBL AU063061 [ CGGTTGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGANCGGACGCGTGGCAGCCGAACCACCAACGCGAGCNAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGNGATGCT ] [+] EMBL AK121515 [ GAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTAATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTA ] [+] EMBL C72672 [ GAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCC CC ACGANCAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCANCCCGCGCCAACTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACAACCTCATCAAGGGCACCATAAGCCGGCGGGGGCGTCATTCCGC ] [+] EMBL AU081547 [ GAAGGGANGGAAAGGGGCTGCTCGCGGCGAAGACCGA CGGCGGCGAAGNCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAAaaaaaaa ] [+] EMBL AU101158 [ GGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTA CTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAaaaaaaaaa ] [+] EMBL AA751996 [ cacgagATCA CCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGANGANCTCGACACCCTCATCAAGGGNACCAT ANCCGGCGGNGGGGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCCAGGAGTNTGANAAGCA CGGCGGCTATGTGTTCTTGGAANTTTTCTATGACTTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCNNTTATCTTTTCACTAGTAGTCTTAATCATTTANGACTTGTTGTTATGGTGATTACCTNAATTANGTGTTCCNGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGCAGGGCTGAA ACTTGACTTGCAGCANCTTGGTGTAGTTGTGATNTGAAACTGCTTATATTTT ] [-] EMBL D43145 [ GGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAANCCCAGTTANCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTNCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATAT ] consensusID : consensus_15565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 798 fasta sequence [GTGAGTTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC-TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC-TGGAGCTGGCCGGCAACGCGAGCAAGGA-TC-TCAAGGTGAAGCGTA-TCACCCC-GCGCCATCTCCA-GCTAGCCATCCGC-GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA] [+] EMBL AK121533 [GTGAGTTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA] [+] EMBL AK061605 [ TTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCG AAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGAT ] [+] EMBL AU031462 [ CGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGCGGGGGATGAGGAGCTCGACACGC ] [+] EMBL C73977 [ CCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGNGGGCAAGGGAGGCAAGGGGNTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGNCCCCGTCTCCCGNTCCTCCCGNGCCGGNCTCCAGTT ] [+] EMBL OS1321777 [ TTGCAGCGCACGACCCCGCGGACTCGATCCANATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGNCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGNCGTGTACTTCCGCGGCGATTCTCGAGTANCTAACCGCCGAGGTCCTTGGAGTTGGCCGG AACGNGAGAAAAGATTCTTAAAGGTTAAGCGTATTAACCCCGGGGCAATTTTCANTTTAGCCATtc ] [+] EMBL OS1321776 [ TGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTNGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGNTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGNTCATGTCCGCGTCGGCGNCA ] [+] EMBL AU101555 [ GTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAAaaaa ] [+] EMBL CA998130 [ CGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGC ] [+] EMBL AU223327 [ CCATCCGC GGGGATGAGGAGCTNGACACGCTCATCAAGGGCACCATNGCCGGCGGTGGNGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTNATNCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAAaaaaaaa ] consensusID : consensus_15565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence [GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAGAGCCTCTCTGATCCAATGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCGCTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGCCGCGTCGGCGCCACCGCCGCC-GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG-CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG-CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC-GGTGGCGTCATCCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCC-AAGAGTGATGCG-AAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA] [+] EMBL BI805603 [GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAGAGCCTCTCTGATCCAATGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCGCTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGCCGCGTCGGCGCCACCGCCGCCAGTGTACTCCGCGGCGATTCTCGAGTACCTAACCGTCCGAGGTCCTGGAGCTGGCCGGCAACGCGAGTCAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC GGTGGCGTCAT CCCCCATATCCACAAGTCGCTCATCAACAAGACCTCC AAGAGTGATGCGAAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTAGAAATTATCGTGAC ATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTAAAAAAA ] [+] EMBL CA998166 [ C GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGGGGGCGTCATCCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCG AAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA] [+] EMBL CA998127 [ C GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC GGTGGCGTCATCCCCCCATAT CACAAGTCGCTCATCAAC AGACCTCC AAGAGTGATGCG AAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCANGTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAA ] [+] EMBL AU162354 [ GTGGGTGTTTTACTGTAAATTTGTTATGTTTTCTCATTTGATTTGANGTATTTGTGCTACNGTGTTCAANCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGANAATGTTGGTTGCNGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCNGTTCAGATTATCTTGTTNATGTTTNAGATCNGTTCGNTTGAAAAAAA ] consensusID : consensus_15565#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GAGCGAGAGAGGGAGAGGGAGAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGACGGCGNCGAAGGCCCGNCGATCAAGGACAAGGACCGCAAGAAGGCGCCCNTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATCNTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCTNAANGATGA] [+] EMBL OS1633A [GAGCGAGAGAGGGAGAGGGAGAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGACGGCGNCGAAGGCCCGNCGATCAAGGACAAGGACCGCAAGAAGGCGCCCNTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATCNTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCTNAANGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15565#0 CGCGGTGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAA 60 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 ------------------------------------------------------------ consensus_15565#2 ------------------------------------------------------------ consensus_15565#0 AACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGA 120 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 ---------------------------------------------------GTGAGTTTG 9 consensus_15565#2 ------------------------------------------------------------ consensus_15565#0 GGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGA 180 consensus_15565#3 ----------------------------------------GAGCGAGAGAGGGAGAGGGA 20 consensus_15565#1 AACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGG 69 consensus_15565#2 ------------------------------------------------------------ consensus_15565#0 GAGGAGGAGGAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGA 240 consensus_15565#3 GAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGA 80 consensus_15565#1 GCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCA 129 consensus_15565#2 ---GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAG--- 54 * * * * ** *** ** ** *** ** consensus_15565#0 CGGCGGCGAAGGCCGCCGCCGA-CAAGGACAAGGACCGCAAG-AAGGCGCCCGTCTCCCG 298 consensus_15565#3 CGGCGNCGAAGGC--CCGNCGATCAAGGACAAGGACCGCAAG-AAGGCGCCCNTCTCCCG 137 consensus_15565#1 CGGCGGCAAAGAG---CGCCGA-CAAGGACAAGGACAAGAAG-AAGGCCCCCGTCTCCCG 184 consensus_15565#2 -AGCCTCTCTGAT---C--CAA-TGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCG 107 ** * * * * * * ** **** *** ***** *** ******* consensus_15565#0 CTCCTC-CCGCGCC--GGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGG 355 consensus_15565#3 CTCCTC-CCGCGCC--GGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGG 194 consensus_15565#1 CTCCTC-CCGCGCC--GGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTC 241 consensus_15565#2 CTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTC 167 ****** **** * ** *********** ********************** *** consensus_15565#0 GAGGGTGTCGGCGAACGGCCGC-GTGGGGGCGACGGCGGCGG-TGTACACGGCGGCGATC 413 consensus_15565#3 GAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATC 254 consensus_15565#1 GAGGGCGTCGGCTCATGGCCGC-GTCGGCGCCACCGCCGCCG-TGTACTCCGCGGCGATT 299 consensus_15565#2 GAGGGCGTCGGCTCATG-CCGC-GTCGGCGCCACCGCCGCCG-TGTACTCCGCGGCGATT 224 ***** *** * * * ** * ** ** ** ** ** * ***** * ** *** consensus_15565#0 CTCGAGTACCTGACGGCGGAGGTCCTGGA--GCTCGCCGGCAACGCCAGC--AAGGACCT 469 consensus_15565#3 NTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCT 314 consensus_15565#1 CTCGAGTACCTAACCGCCGAGGTCCTGGA--GCTGGCCGGCAACGCGAGC--AAGGATCT 355 consensus_15565#2 CTCGAGTACCTAACCGCCGAGGTCCTGGA--GCTGGCCGGCAACGCGAGC--AAGGATCT 280 ********** ** ** ** **** * * * * *** **** * * ** ** consensus_15565#0 CAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCT 529 consensus_15565#3 NAANGATGA--------------------------------------------------- 323 consensus_15565#1 CAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCT 415 consensus_15565#2 CAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCT 340 ** * * consensus_15565#0 CGACACCCTCATCAAGGGCACCATAGCCGGCGGCGGCGTCATCCCGC-ACATCCACAAGT 588 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 CGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCC-ATATCCACAAGT 474 consensus_15565#2 CGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCCATATCCACAAGT 400 consensus_15565#0 CCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAA 648 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 CGCTCATCAACAAGACCTCCAAAGAGT----GATGCGAAAAAAAAAAAACTCCCTCATGT 530 consensus_15565#2 CGCTCATCAACAAGACCTCCAA-GAGT----GATGCGAAAAAAAAAAAACTCCCTCATGT 455 consensus_15565#0 GTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCAC 708 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 GCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTT---GTTATGTTTTCTC 587 consensus_15565#2 GCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTT---GTTATGTTTTCTC 512 consensus_15565#0 TAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTG 768 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 ATTTGATTTGATGTATTTGTGCTACAGTGTT-CAATCCTTAGTGGGTTTAGGTGCCTTTT 646 consensus_15565#2 ATTTGATTTGATGTATTTGTGCTACAGTGTT-CAATCCTTAGTGGGTTTAGGTGCCTTTT 571 consensus_15565#0 AATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACT 828 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 AGTCTTTTGAAATTATCGTGACAATGTTGGT----------TGCAGCTGAATTCTTGTGA 696 consensus_15565#2 AGTCTTTTGAAATTATCGTGACAATGTTGGT----------TGCAGCTGAATTCTTGTGA 621 consensus_15565#0 TGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGG--T 886 consensus_15565#3 ------------------------------------------------------------ consensus_15565#1 ATTCTTCACTCCGTAT-GCTGTTCTG---AACCATCCATCTCGATGCTTCAGTTCAGATT 752 consensus_15565#2 ATTCTTCACTCCGTAT-GCTGTTCTG---AACCATCCATCTCGATGCTTCAGTTCAGATT 677 consensus_15565#0 GACTAGCTAATGCTTGGTTGTTACTTG-TTGATGACAAAAAAAA-- 929 consensus_15565#3 ---------------------------------------------- consensus_15565#1 ATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA 798 consensus_15565#2 ATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA 723 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||