These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1064 fasta sequence [CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG-CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT-CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC-TCGGC-TGC-TGGTACTACAAGAGCCGCCGCTACGACACC-ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC-TCCAG-TGGCCCG-AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA-GGCGATGGATGGATG-CCAGCACGGTTGGATGCGTGAGGCGCTCG-AGCGGCTC-GTCTCCCGGCACGCC-ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA-TCAAAGCGAGCTGAG-TCGCGCG-AGAAGGGAAACGGGCGGG-CTACGAGCACAGCACGG-GCGGCGGC-GCG-AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG-GCAGGCCGGCCGGGC-TC-GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG-CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA-TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT-ACGT-ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC-AATTAATTTAAAACACCACATTGCGAAAGC-AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA] [+] EMBL AK059780 [CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCT ] [+] EMBL AK104571 [ TCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCT ] [+] EMBL CF325050 [ gCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCTTGGTCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGC ] [+] EMBL AU057570 [ GCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCA CGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGG GCTNCGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCANGGCGATGGATGGATG CCANCAAGGTTGGATGCGTGANGCGCTCGAAGCGGCTC GTCTCCCGGCANGCCAACAAACAAGCTGCAGTCTGCGCTGTAAAACCAACCAAAATTCAAAGCGAAGTGAA TCGCGCGAAGAAGGGGAAANGGCGGG ] [+] EMBL CA755740 [ CAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCG ] [+] EMBL CA756035 [ ATTCTAACCCTTTCTACTATCCTACTCTCTCTCTCCTACAATCACAGATTCGATGGCCGAGCTGGAGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGAGGTGGGTTGCATCCCGTACCGGGCGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCACAAGGGGCACGGGATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGT ] [+] EMBL AU058345 [ GTGGTGGGTTGCATCCCGTACCGGGTGCGCA NGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGC TT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGCTTGCTTGGTACTACAAGAGCCGCCGTTACGACACCAACTTACGANGGCTTCATGTTCCCTCTCCGCGTCAC ] [+] EMBL AU065616 [ GTGGTGGGTTGCATCCCGTACCGGGTGCGCA CGGCCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGANGC TT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTTC TTCAGTTGGCCCG AGATGTCCTCCCGCAAGCGCACttn ] [+] EMBL AU057571 [ GCNGCCCGCC CGA GCGCT CGAGGAGGCCGGCTTCCGCGGCGACACCGAGACGTCCCTTCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC A CTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaa ] [+] EMBL AU030069 [ ncnagcctT CGNNGAAGCCCGNNTCCGCGGCNACACCGA ACNTCCCTTCGNT TGC TGTTACTACAAGA CCNCCNTTA GACACC ACTTACGAGGGCTTCATGTTCCCTNTCCG GTCACCGACGAGCTCCTTCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTNAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaaa ] [+] EMBL AU095798 [ ctTCC TCCAG TGGCCCGAAGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATGCCCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTNTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAa ] [+] EMBL AU165427 [ CACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAAAAA ] [+] EMBL C72120 [ CCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCGGACGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTTGGGGTTGCAGGGGTCGTCGTCGTGTATAACGTAACGTCGCGGCG AATAACGGCGCanatt ] [-] EMBL BI305577 [ CGGTGCAGCA GCCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG ACCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTt ] [+] EMBL BI808242 [ CGGCTCTGTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCGACCTAAA TCAAAGCGAGCTGAGTTCGCGCG AGAAGGGAAAC GGCGGGTCTACGAGCACAGCACGGTGCGGCGGCTGCGTAAGTC CCGGC TCGTGTTCGCTCTCCCGGTGAA C GCA GCC GCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGAC GCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaaaa ] [+] EMBL BQ907733 [ GCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGTGCA GCCGGCCGGGCTTCAGATCACATCTCGATCGAGCACCATATATTTT GCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAAATTAATTTAAAACACCACATTGCGAAAGCAAATTCGAGATTCTTTCTTTGAAGCAAAAA ] [+] EMBL BI806890 [ tCCCCGCGTCGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC CATTAANTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA] consensusID : consensus_15579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence [GCAGCAGGCAATGGATGGATGCCAGCACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCTCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTTACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCGCGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCGGTACCACACACCCACAGACCGCGCCCAACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGCGAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCACCGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCACGCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCGGGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGCCGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCCCACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAACACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA] [+] EMBL BE039846 [GCAGCAGGCAATGGATGGATGCCAGCACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCTCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTTACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCGCGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCGGTACCACACACCCACAGACCGCGCCCAACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGCGAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCACCGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCACGCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCGGGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGCCGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCCCACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAACACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA] consensusID : consensus_15579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGTTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGTTTCGAGGAGGCCGGCGTCCGCGNCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGAGGTCTTCAGTGGCCGAGATNTCCTCCCGAANTGAACTTGGGGCACGTGAAGAANCGATGATGATTCAGACGTTGATTTGTAA] [+] EMBL OSS10954A [ATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGTTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGTTTCGAGGAGGCCGGCGTCCGCGNCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGAGGTCTTCAGTGGCCGAGATNTCCTCCCGAANTGAACTTGGGGCACGTGAAGAANCGATGATGATTCAGACGTTGATTTGTAA] consensusID : consensus_15579#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [CGTGTCGAATTCGGCACGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC] [+] EMBL BE229874 [CGTGTCGAATTCGGCACGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC] [+] EMBL BE230628 [CGTGTCGAATTCGGCGCGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC ] consensusID : consensus_15579#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 252 fasta sequence [CCGATTCGGCACGAGTCGTGCCGGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGAAAGCAATTCGAAA] [+] EMBL AA751831 [CCGATTCGGCACGAGTCGTGCCGGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGAAAGCAATTCGA ] [+] EMBL AU166195 [ ATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGNAAGCAAaaaaaaa] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAA 60 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 TCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGA 120 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 GCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGGCGGCGAGA 180 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 TGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGT 240 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 GGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCTCGAGGAGGCCGGCG 300 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 TCCGCGGCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGCTACGACA 360 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ------------------------------------------------------------ consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 CCACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCCTCCAGTGGCCCG 420 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ----------------------------------GCAGCAGGCAATGGATGGATGCCAGC 26 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCAGGCGATGGATGGATGCCAGC 480 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 ACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGC 86 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGC 540 consensus_15579#2 ---------------------------------ATTCTAACCCTAACGACAACCCTACTC 27 consensus_15579#1 AGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATG 146 consensus_15579#3 --------------------------------CGTGTCGAATTCGGCACGAG----AACG 24 consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 AGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAACG 600 consensus_15579#2 TCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCT 87 consensus_15579#1 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 206 consensus_15579#3 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 84 consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 660 consensus_15579#2 GCAGCGTTACACGAGCGCCGGGGGCCGCATCGTG--GTGGGTTGCATCCCGTACCGGGTG 145 consensus_15579#1 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 262 consensus_15579#3 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 140 consensus_15579#4 ---------------------------------------CC-GATTCGGCACGAGTC-GT 19 consensus_15579#0 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 716 consensus_15579#2 C--GCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGAT 203 * ** **** * consensus_15579#1 TTTGGCCGCTCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 318 consensus_15579#3 TTTGGCCGCCCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 196 consensus_15579#4 ----GCCG--------GGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 63 consensus_15579#0 TTTGGCCGCCCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 772 consensus_15579#2 GTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGT 263 ** * **** ***** * ****** * ** **** * consensus_15579#1 TCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTT 378 consensus_15579#3 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 256 consensus_15579#4 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 123 consensus_15579#0 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 832 consensus_15579#2 TTCGAGGAGGCCGGCGTCCGCGNCGAC--ACCGAGACGTCCCTCGGCTGCTGGTACTACA 321 * *** * **** ** * ** * * * * * ** * consensus_15579#1 ACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCG 438 consensus_15579#3 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 316 consensus_15579#4 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 183 consensus_15579#0 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 892 consensus_15579#2 AGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGA 381 * * ** * * * * * * consensus_15579#1 CGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCG--GTACCACAC 496 consensus_15579#3 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC---------------- 360 consensus_15579#4 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCAC--ATTGCGAAA 241 consensus_15579#0 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCAC--ATTGCGAAA 950 consensus_15579#2 GGTCTTCAGTGGCCGAGATNTCCTCCCG-AANTGAACTTGGGGCACGTGAAGAANCGATG 440 * * * ** * * * * * consensus_15579#1 ACCCACAGACCGCGCCC-----AACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGC 551 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 GCAATTCGAAA------------------------------------------------- 252 consensus_15579#0 GCAATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTAC 1010 consensus_15579#2 ATGATTCAGACGTTGATTTGTAA------------------------------------- 463 consensus_15579#1 GAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCAC 611 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 CAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA------ 1064 consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 CGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCAC 671 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ------------------------------------------------------------ consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 GCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCG 731 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ------------------------------------------------------------ consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 GGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGC 791 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ------------------------------------------------------------ consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 CGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCC 851 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ------------------------------------------------------------ consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 CACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAA 911 consensus_15579#3 ------------------------------------------------------------ consensus_15579#4 ------------------------------------------------------------ consensus_15579#0 ------------------------------------------------------------ consensus_15579#2 ------------------------------------------------------------ consensus_15579#1 CACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA 961 consensus_15579#3 -------------------------------------------------- consensus_15579#4 -------------------------------------------------- consensus_15579#0 -------------------------------------------------- consensus_15579#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||