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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1631 fasta sequence
[TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG-ACAGCACCAGCTGG-TGGTTTTGTCA-AATCTGC-TTCAGTTGCTGAAGG-TGCAT-CATCGA-T-CCCT-GGCTGGACGA--TCAATGGG--ACAG-T--CG-AGCT-CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA-GGGGGATC-ATGCTGTACGTCTTGGAAACGACGCAAGTA-TAGGGCAGGTGGTGCAGGTTGA-GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC-TGCCCGAAC-GTG-TGCACAGCTA-GAGTCAC-TCAATGTGTCTGTGC-TCGG-TGGTGCATCACAGACAGTGG-ACCTGCAGACA-TTGTA-CAACATA-GAAGGC--TGGGATGCATATGCATTGGC--TTTTC-AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT-GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG-AAGCGCGCCA-TTGAGCTTCTAT-CAGGGAA-GGAA-GGCATCATCTCACAG-ATGGTCGAGACAACCCCTCAG-AAAGAG-TACAGCCTGACATT-CACATT-GGGCT-CAG-CAGGGGATTCATG-CCAG-CCA-CCAATGGCTGTCATG-GCATTCGCAGGTGACCAGG-CCCAGAACTT-CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG-ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAAAAA]
[+] EMBL AK060989 [TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATT ]
[+] EMBL AK102373 [ GAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGG ]
[+] EMBL BP184648 [ GGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TG CCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAAC ]
[+] EMBL AU166071 [ CGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGANGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAA G TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAGTT CG AGCT CATCTCAGCAGGCC ]
[+] EMBL AU064508 [ GCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCTGGGCTGGACGA TCAATGGG ACAA T CG AGCT AATTTNAGAAGG CAACACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATCAATGCTTTACGNCTTTGGAACGCCG AAATATTAGGGCA ]
[+] EMBL AU166089 [ GCTCGCTCACTCGGTCAGCTGCACACACACTGCACTNCGGCTCACTCTCTCCACTGTNCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGANTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCNCTCCCATCTGGCCTCGGCCGCNGCGGTGGAGGATGG TTGCTCANCAATGGTGACTTTGAGAAAAGC CCAGCTGG TGGTTTTGTCA AATCTGCTTTAAGTTGCTGAAGG TGCAT TANCGA TCCCCT GGCTGGACGAT TCAATGG ]
[+] EMBL C91781 [ GCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACAGGGGGGATC ATGCTGTACGTCTTGGAAACGACG AAGAT TAGGG ]
[+] EMBL AF071063 [ TCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGATAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAAGATGGCTTGCTCAGCAATGGTGACTTTGAA ACAGCACCAGCTGGTTGGTTTTGTCACAATCTGC TTCAATTGCTGAAGGTTGCATCCATCCATT CCCTGGGCTGGACGAATTCAATGGGGAACAA TTCCGAACCTCCATCTtcc ]
[+] EMBL AU032245 [ CTGTNCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGA CNCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGANTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTACCTTGGCCTGCTTCTGCTGGCGCCCTCCCATCTNGCCTCGGCCGCNGCGGTGGAGGATGGCTTTCTCAGCAATGGTGACTTTNAG ANAGCCCCAGCTGG TGGTTTTGTCA AATCTGC TTTAGTTGCTGAAGG TGCAT NATCGA T CCCT GGCTGGACGA TCAA ]
[+] EMBL C73919 [ AG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGAGGAGGGGCTCAGAGTATGCTATCACGTTCAGTGCTTGCCCGGACGGTGTTGCACAANTAGGAGTCACTTCAATGTGTCTGTGCTTCGGTTGGTGCATCACAGACAGTGGNCCCTTCAGACATTTGTACCAACATAGGAAGGCTTTGGGATTCATATGCATTTGCTTTTTTCAAGGCAACAAATt ]
[+] EMBL CF304593 [ TCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGA ]
[+] EMBL C93480 [ ccggGAGCCTTGAGTTCAGGAACCCTGGGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGGAAAGCGCGCCA TTGAGCTTCTAT CAGGGAAGGGAAGGGCATCATCTCACAG ATGGTCGGGNCAACCCCTCAGAAAAGAG TACAGCCTGACATT CACA ]
[+] EMBL CA999758 [ GGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGT ]
[+] EMBL AU100830 [ CGCCATTTGAGCTTCTATCCAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCNTGACATT NACATT GGNCT CAG CAGGGGATTCATG CCAG CCACCCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTAAAAAA ]
[+] EMBL AU094791 [ GCTTCTAN CNGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACANCTTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATNCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGATCCGAAAAAAA ]
[+] EMBL AU166107 [ CACAGTTTGTTCGAGACACCCCTTCAGAAAAGAG TACANCCTGACATT CACATT GGNCTCCAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GNATTCGCA GTGACCA G CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGNTAGCGTTCTACAGTGTGTATTNCAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTNCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAA ]
[+] EMBL AU029489 [ GACACCCCCTCAGAAAAGAGTTACACCCTGACATTCCCCATTGGGGCT CAGCCAGGGGATTCCTGCCCAGCCCA CC ATGGCTGTCATGCCCATTCCCAGGTGACCAGGCCCCAGAACTTCCCACTACTCGCCC TGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAAC CG G AGCGACGACCACAGCTCGCTCTGTGGGCCAGTGAATCGATGATGTGCGCGTCTGGGGCTTG ATGGAGCTGCTGGGTTGAAGGC AGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL BP184649 [ aCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTTTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGA AAAAAAAAAAAA ]
[+] EMBL AU030217 [ CCCTCAG AAAGAG TACAGCCTGACATT CACATT GGCCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATN GCATTCGCAGTTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACANTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCNTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGNGTTGAAAAAAA ]
[+] EMBL AU184768 [ CCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTNTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTNTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCNCTAGTTTTGGTAGTAAGCTTGAAGTTTNTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAaaaa ]
[+] EMBL AU029669 [ TCTTAGTGATTGTGGTCGAAAGATATATAANCCTCTTCTGTAAGTATGAGGAGNCCACTANTTTTGGTNGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGNTTAGGCTAAAGCTNCCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGATCCGAAAAAAA ]
consensusID : consensus_15616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTGGGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACAGGCCCAAAACTTTCCCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGTCATTCCCAGCGCGAACTGAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCGAGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGCTTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAGCATTGTCAGTTTGATGTTGTTTTGAATCTTTTAGTGATTGTGGTCGAAAGATATATAAACCTTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGTTGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTCTGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTAATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGGAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759787 [TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTGGGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACAGGCCCAAAACTTTCCCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGTCATTCCCAGCGCGAACTGAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCGAGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGCTTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAGCATTGTCAGTTTGATGTTGTTTTGAATCTTTTAGTGATTGTGGTCGAAAGATATATAAACCTTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGTTGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTCTGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTAATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGGAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGACTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCTGGGCCTGCTTCTGCTGGCGCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCANTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGATCCTGGCTGGACGATCATGGGNATCGACTCATCTCACAGGCACACCAGGTGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGTCAGTTA]
[+] EMBL AU166204 [GGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGACTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCTGGGCCTGCTTCTGCTGGCGCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCANTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGATCCTGGCTGGACGATCATGGGNATCGACTCATCTCACAGGCACACCAGGTGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGTCAGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15616#0 ------------------------------------------------------------
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTG 60
consensus_15616#0 ----------------TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACA 44
consensus_15616#2 ----------------------------------GGCTCGCTCACTCGGTCAGCTGCACA 26
consensus_15616#1 GGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACA 120
** * * **** *****
consensus_15616#0 CACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAG 104
consensus_15616#2 CACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAG 86
consensus_15616#1 GGCCCAAAACTTTC-CCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGT 179
* * **** * **** * * ** *** ** ** *** * *
consensus_15616#0 GA-----GGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAG-ATT-CGGCGAG 157
consensus_15616#2 GA-----GGCGAGA-CTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAG-ATT-CGGCGAG 138
consensus_15616#1 CATTCCCAGCGCGAACT-GAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCG 238
* *** ** ** ** * * *** * * * ** * * *** * * *
consensus_15616#0 GAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGC 217
consensus_15616#2 GAGGCTCGCATTGCTGGGGCTGTGC-TGGGCCTGCTTCTGCTGGCGCC-TCCCATCTGGC 196
consensus_15616#1 AGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGC 298
* * * * ****** * * * * * * * ***
consensus_15616#0 CTCG-----GCCGCTGCGGTGGAGG--ATGGCTTGCTCAGCAATGGTGACTTTGAGACAG 270
consensus_15616#2 CTCG-----GCCGCTGCGGTGGAGG--ATGGCTTGCTCAGCAATGGTGACTTTGAGACAG 249
consensus_15616#1 TTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAG-CAT 357
* ** *** * ** *** * * * * * *** * ** **
consensus_15616#0 CACCAGCTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGAT---CC 327
consensus_15616#2 CACCAN-TGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGAT---CC 305
consensus_15616#1 TGTCAGTTTGATGTTGTTTTGAATCT--TTTAGTGATTGTGGTCGAAAGATATATAAACC 415
** * * *** * * ***** ** *** ** * * * ** ** **
consensus_15616#0 CTGGCTGGACG-ATCAATGGGACAGTCGAGCTCATCTCAG----CAGGCCAGCACCAGGG 382
consensus_15616#2 -TGGCTGGACG-ATCATGGGNA---TCGA-CTCATCTCA-----CAGGC--ACACCAGG- 351
consensus_15616#1 TTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGT 475
* ** * * ** * * * * * * * * * * ***
consensus_15616#0 TGGC--ATGATTCTTATTGTTCCACAGGGGGATCATGCT-GTACGTCTTGGAAACGACGC 439
consensus_15616#2 -------TGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGT 404
consensus_15616#1 TGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTC 535
** ** * * * ** * *
consensus_15616#0 AAGTATAGGGCAGGTGGTGCAGGTTGAGAAGGGCTCAGAGTATGCTATCACGTTCAGTGC 499
consensus_15616#2 CAGT-TA----------------------------------------------------- 410
consensus_15616#1 TGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTA 595
**
consensus_15616#0 TGCCCGAACGTGTGCACAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACA 559
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGG 655
consensus_15616#0 GACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCATTGGCTTT 619
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 679
consensus_15616#0 TCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCC 679
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACC 739
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 AAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACAC 799
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTG 859
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCA 919
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 AGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGA 979
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATG 1039
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 CCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTC 1099
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAG 1159
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCT 1219
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 CTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAA 1279
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAAT 1339
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 CTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACT 1399
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 AGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAG 1459
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAA 1519
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 GTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAA 1579
consensus_15616#2 ------------------------------------------------------------
consensus_15616#1 ------------------------------------------------------------
consensus_15616#0 ATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAAAAA 1631
consensus_15616#2 ----------------------------------------------------
consensus_15616#1 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||