These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1631 fasta sequence [TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG-ACAGCACCAGCTGG-TGGTTTTGTCA-AATCTGC-TTCAGTTGCTGAAGG-TGCAT-CATCGA-T-CCCT-GGCTGGACGA--TCAATGGG--ACAG-T--CG-AGCT-CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA-GGGGGATC-ATGCTGTACGTCTTGGAAACGACGCAAGTA-TAGGGCAGGTGGTGCAGGTTGA-GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC-TGCCCGAAC-GTG-TGCACAGCTA-GAGTCAC-TCAATGTGTCTGTGC-TCGG-TGGTGCATCACAGACAGTGG-ACCTGCAGACA-TTGTA-CAACATA-GAAGGC--TGGGATGCATATGCATTGGC--TTTTC-AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT-GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG-AAGCGCGCCA-TTGAGCTTCTAT-CAGGGAA-GGAA-GGCATCATCTCACAG-ATGGTCGAGACAACCCCTCAG-AAAGAG-TACAGCCTGACATT-CACATT-GGGCT-CAG-CAGGGGATTCATG-CCAG-CCA-CCAATGGCTGTCATG-GCATTCGCAGGTGACCAGG-CCCAGAACTT-CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG-ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAAAAA] [+] EMBL AK060989 [TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATT ] [+] EMBL AK102373 [ GAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGG ] [+] EMBL BP184648 [ GGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGA GAAGGGCTCAGAGTATGCTATCACGTTCAGTGC TG CCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAAC ] [+] EMBL AU166071 [ CGGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGANGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAA G TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAGTT CG AGCT CATCTCAGCAGGCC ] [+] EMBL AU064508 [ GCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCTGGGCTGGACGA TCAATGGG ACAA T CG AGCT AATTTNAGAAGG CAACACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATCAATGCTTTACGNCTTTGGAACGCCG AAATATTAGGGCA ] [+] EMBL AU166089 [ GCTCGCTCACTCGGTCAGCTGCACACACACTGCACTNCGGCTCACTCTCTCCACTGTNCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGANTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCNCTCCCATCTGGCCTCGGCCGCNGCGGTGGAGGATGG TTGCTCANCAATGGTGACTTTGAGAAAAGC CCAGCTGG TGGTTTTGTCA AATCTGCTTTAAGTTGCTGAAGG TGCAT TANCGA TCCCCT GGCTGGACGAT TCAATGG ] [+] EMBL C91781 [ GCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACAGGGGGGATC ATGCTGTACGTCTTGGAAACGACG AAGAT TAGGG ] [+] EMBL AF071063 [ TCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGATAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAAGATGGCTTGCTCAGCAATGGTGACTTTGAA ACAGCACCAGCTGGTTGGTTTTGTCACAATCTGC TTCAATTGCTGAAGGTTGCATCCATCCATT CCCTGGGCTGGACGAATTCAATGGGGAACAA TTCCGAACCTCCATCTtcc ] [+] EMBL AU032245 [ CTGTNCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGA CNCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGANTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTACCTTGGCCTGCTTCTGCTGGCGCCCTCCCATCTNGCCTCGGCCGCNGCGGTGGAGGATGGCTTTCTCAGCAATGGTGACTTTNAG ANAGCCCCAGCTGG TGGTTTTGTCA AATCTGC TTTAGTTGCTGAAGG TGCAT NATCGA T CCCT GGCTGGACGA TCAA ] [+] EMBL C73919 [ AG ACAGCACCAGCTGG TGGTTTTGTCA AATCTGC TTCAGTTGCTGAAGG TGCAT CATCGA T CCCT GGCTGGACGA TCAATGGG ACAG T CG AGCT CATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACA GGGGGATC ATGCTGTACGTCTTGGAAACGACGCAAGTA TAGGGCAGGTGGTGCAGGTTGAGGAGGGGCTCAGAGTATGCTATCACGTTCAGTGCTTGCCCGGACGGTGTTGCACAANTAGGAGTCACTTCAATGTGTCTGTGCTTCGGTTGGTGCATCACAGACAGTGGNCCCTTCAGACATTTGTACCAACATAGGAAGGCTTTGGGATTCATATGCATTTGCTTTTTTCAAGGCAACAAATt ] [+] EMBL CF304593 [ TCACGTTCAGTGC TGCCCGAAC GTG TGCACAGCTA GAGTCAC TCAATGTGTCTGTGC TCGG TGGTGCATCACAGACAGTGG ACCTGCAGACA TTGTA CAACATA GAAGGC TGGGATGCATATGCATTGGC TTTTC AGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCT GGTATGGAGGATGATCCGACTTGTGGA ] [+] EMBL C93480 [ ccggGAGCCTTGAGTTCAGGAACCCTGGGTATGGAGGATGATCCGACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGGAAAGCGCGCCA TTGAGCTTCTAT CAGGGAAGGGAAGGGCATCATCTCACAG ATGGTCGGGNCAACCCCTCAGAAAAGAG TACAGCCTGACATT CACA ] [+] EMBL CA999758 [ GGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCAAGGG AAGCGCGCCA TTGAGCTTCTAT CAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGT ] [+] EMBL AU100830 [ CGCCATTTGAGCTTCTATCCAGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACAGCNTGACATT NACATT GGNCT CAG CAGGGGATTCATG CCAG CCACCCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTAAAAAA ] [+] EMBL AU094791 [ GCTTCTAN CNGGGAA GGAA GGCATCATCTCACAG ATGGTCGAGACAACCCCTCAG AAAGAG TACANCTTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATNCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGATCCGAAAAAAA ] [+] EMBL AU166107 [ CACAGTTTGTTCGAGACACCCCTTCAGAAAAGAG TACANCCTGACATT CACATT GGNCTCCAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GNATTCGCA GTGACCA G CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGNTAGCGTTCTACAGTGTGTATTNCAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTNCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAA ] [+] EMBL AU029489 [ GACACCCCCTCAGAAAAGAGTTACACCCTGACATTCCCCATTGGGGCT CAGCCAGGGGATTCCTGCCCAGCCCA CC ATGGCTGTCATGCCCATTCCCAGGTGACCAGGCCCCAGAACTTCCCACTACTCGCCC TGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAAC CG G AGCGACGACCACAGCTCGCTCTGTGGGCCAGTGAATCGATGATGTGCGCGTCTGGGGCTTG ATGGAGCTGCTGGGTTGAAGGC AGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAAAAAAAAAAAAAAAAAAA] [+] EMBL BP184649 [ aCCCTCAG AAAGAG TACAGCCTGACATT CACATT GGGCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATG GCATTCGCAGGTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTTTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGA AAAAAAAAAAAA ] [+] EMBL AU030217 [ CCCTCAG AAAGAG TACAGCCTGACATT CACATT GGCCT CAG CAGGGGATTCATG CCAG CCA CCAATGGCTGTCATN GCATTCGCAGTTGACCAGG CCCAGAACTT CCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTCTACANTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCNTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACTAGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGNGTTGAAAAAAA ] [+] EMBL AU184768 [ CCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGGTAGCGTTNTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTG ATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTNTGAATCTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCNCTAGTTTTGGTAGTAAGCTTGAAGTTTNTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAGGCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAaaaa ] [+] EMBL AU029669 [ TCTTAGTGATTGTGGTCGAAAGATATATAANCCTCTTCTGTAAGTATGAGGAGNCCACTANTTTTGGTNGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGNTTAGGCTAAAGCTNCCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAAGTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAAATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGATCCGAAAAAAA ] consensusID : consensus_15616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTGGGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACAGGCCCAAAACTTTCCCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGTCATTCCCAGCGCGAACTGAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCGAGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGCTTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAGCATTGTCAGTTTGATGTTGTTTTGAATCTTTTAGTGATTGTGGTCGAAAGATATATAAACCTTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGTTGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTCTGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTAATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGGAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759787 [TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTGGGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACAGGCCCAAAACTTTCCCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGTCATTCCCAGCGCGAACTGAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCGAGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGCTTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAGCATTGTCAGTTTGATGTTGTTTTGAATCTTTTAGTGATTGTGGTCGAAAGATATATAAACCTTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGTTGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTCTGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTAATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGGAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGACTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCTGGGCCTGCTTCTGCTGGCGCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCANTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGATCCTGGCTGGACGATCATGGGNATCGACTCATCTCACAGGCACACCAGGTGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGTCAGTTA] [+] EMBL AU166204 [GGCTCGCTCACTCGGTCAGCTGCACACACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGACTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATTCGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCTGGGCCTGCTTCTGCTGGCGCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCANTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGATCCTGGCTGGACGATCATGGGNATCGACTCATCTCACAGGCACACCAGGTGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGTCAGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15616#0 ------------------------------------------------------------ consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 TAGGCTTTTTAGGGGCGCGGGCCCCTCCCTCTAAAAGAGGTAGCCTGGCCGTTCCCTTTG 60 consensus_15616#0 ----------------TGAGAGTAGGACTGGCTCGGCTCGCTCACTCGGTCAGCTGCACA 44 consensus_15616#2 ----------------------------------GGCTCGCTCACTCGGTCAGCTGCACA 26 consensus_15616#1 GGCTCACCAGGGGTTTCTTGCCAGCCCCCCAATGGGTGTCATGGCATTTTCAGGGGCACA 120 ** * * **** ***** consensus_15616#0 CACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAG 104 consensus_15616#2 CACACTGCACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAG 86 consensus_15616#1 GGCCCAAAACTTTC-CCTACTCGCCCATGGGTAATTCCACCATCCCGGCTGGGAATGTGT 179 * * **** * **** * * ** *** ** ** *** * * consensus_15616#0 GA-----GGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAG-ATT-CGGCGAG 157 consensus_15616#2 GA-----GGCGAGA-CTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAG-ATT-CGGCGAG 138 consensus_15616#1 CATTCCCAGCGCGAACT-GAAAGGACCGGGATAACGTTTTTCAGTGTGTATTGCAACCCG 238 * *** ** ** ** * * *** * * * ** * * *** * * * consensus_15616#0 GAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGC 217 consensus_15616#2 GAGGCTCGCATTGCTGGGGCTGTGC-TGGGCCTGCTTCTGCTGGCGCC-TCCCATCTGGC 196 consensus_15616#1 AGAAACGACGGCCCCAACTCGCTTTTTGGGCCAGTTATCGATTATGTGCGCGTTTGGGGC 298 * * * * ****** * * * * * * * *** consensus_15616#0 CTCG-----GCCGCTGCGGTGGAGG--ATGGCTTGCTCAGCAATGGTGACTTTGAGACAG 270 consensus_15616#2 CTCG-----GCCGCTGCGGTGGAGG--ATGGCTTGCTCAGCAATGGTGACTTTGAGACAG 249 consensus_15616#1 TTGAAAGGAGCTTCTGGGTTGAAGGCAAATATTGGGCTTCTGCTTGGCACTGTTAG-CAT 357 * ** *** * ** *** * * * * * *** * ** ** consensus_15616#0 CACCAGCTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGAT---CC 327 consensus_15616#2 CACCAN-TGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAAGGTGCATCATCGAT---CC 305 consensus_15616#1 TGTCAGTTTGATGTTGTTTTGAATCT--TTTAGTGATTGTGGTCGAAAGATATATAAACC 415 ** * * *** * * ***** ** *** ** * * * ** ** ** consensus_15616#0 CTGGCTGGACG-ATCAATGGGACAGTCGAGCTCATCTCAG----CAGGCCAGCACCAGGG 382 consensus_15616#2 -TGGCTGGACG-ATCATGGGNA---TCGA-CTCATCTCA-----CAGGC--ACACCAGG- 351 consensus_15616#1 TTTTTTGTAAGTATGAGGAGGCCCCTAGTTTTGGTAGTAAGCCTGAAGTTTTTATTAGGT 475 * ** * * ** * * * * * * * * * * *** consensus_15616#0 TGGC--ATGATTCTTATTGTTCCACAGGGGGATCATGCT-GTACGTCTTGGAAACGACGC 439 consensus_15616#2 -------TGCATATCTATGTCCAAGGGATATCTGACGCTTGAACNCCATATAGGCAGTGT 404 consensus_15616#1 TGAGTAATGTGAGATTGTGAGCTAAGGGTAAAGCTTCCTGAAGCTATGTATGGCTGGTTC 535 ** ** * * * ** * * consensus_15616#0 AAGTATAGGGCAGGTGGTGCAGGTTGAGAAGGGCTCAGAGTATGCTATCACGTTCAGTGC 499 consensus_15616#2 CAGT-TA----------------------------------------------------- 410 consensus_15616#1 TGGTGCTTTTTTTTGTGATTCAGAAAGTAACATGCCCTTGTGGGAAGTGTGTGGTGGTTA 595 ** consensus_15616#0 TGCCCGAACGTGTGCACAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACA 559 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ATGTGCCAAAAGCTTGTAATGTTCAAATATCCTCCCTTCAATATTTTAGAAATTTCCGGG 655 consensus_15616#0 GACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCATTGGCTTT 619 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 679 consensus_15616#0 TCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCC 679 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GACTTGTGGACCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACC 739 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 AAAGGATACTGTGGTGTCAAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACAC 799 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTG 859 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GATGATTGAGTCAAACCGAGCTGTCCGCTTTGTCGACTCTGACCAATACACCGTTCCCCA 919 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 AGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGA 979 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATG 1039 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 CCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTC 1099 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAG 1159 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GACGCGGGTAGCGTTCTACAGTGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCT 1219 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 CTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAA 1279 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGAAT 1339 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 CTCTTAGTGATTGTGGTCGAAAGATATATAAACCTCTTCTGTAAGTATGAGGAGGCCACT 1399 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 AGTTTTGGTAGTAAGCTTGAAGTTTCTATTAGGTTGAGTAATGTGAGATTGTGAGCTTAG 1459 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GCTAAAGCTACCTGAAGCTATGTATGGCTGTTTCTGTTGCTTTCTTTTGTGATTCAGAAA 1519 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 GTAACATGCCATTGTGGGAAGTGTGTGGTGGTTAGTGTGCCAAGAGCTTGTAATGTTCAA 1579 consensus_15616#2 ------------------------------------------------------------ consensus_15616#1 ------------------------------------------------------------ consensus_15616#0 ATATCATCCCTTCAATATATTAGAAATTTCAGGAGTTGAAAAAAAAAAAAAA 1631 consensus_15616#2 ---------------------------------------------------- consensus_15616#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||