These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1594 fasta sequence [CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC-GGTTTCACCGAGTGA-GGTTGAGAGTCTCCTTAGGGGCACTGAC-GGCAAAGAGCACCAGAAGGAGCTTTC-TGGCCAAGATGCAGTTTC-TGCCGAAGGTGA-TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG-CAAAATGT-GAACCGTGTCATT-GATTCAT--CCAAGGTTGTTGCATCTAGTGA-ACAAAACAAACCTGATGATTCT-GAATTT-CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC-AGC-AGCAATGAGAAAATTAACC-A-AGCTGTAGGACCGTTGAATCGCATCAA-GGACA-TCC--TTGTTGCC-AACAATCACCCAGCTCC-AGCTATCCATGGACA-TGCTCG-A-TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC-TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT-CAGGTTGCTG-CAGAAAACTTG-ATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG-CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA] [+] EMBL C97634 [CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATAATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGNCCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GG TTCACCGAGTTA GGTTGANAATCTCCTTAGGGGNACTTAC GGGAAAAAG ] [+] EMBL AK071088 [ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTG TATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACA ] [+] EMBL CF323589 [ gGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGTTCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCC ] [+] EMBL OSC101361 [ AGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTCGGGTTTCACCGAGTGAGGGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAA ] [+] EMBL C26410 [ TTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATNATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGACGGGCAAAGAGCACCAGAAGGAGCTTTCTTGGCCAAGATGCAGTTTCTTGCCGNAGGTGATTGACGGAAAAT ] [+] EMBL AU076045 [ TTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAA GTGA TGACGAAAAATTCCAGGACACCTGTG ] [+] EMBL CB637274 [ TCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTG ] [+] EMBL CA766258 [ agtnAGGGATATGACACAAAAGGGGATGATT AGCTGCAGCACTGTTGATGTCTGGTC TTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAANGGCAAGTTGCAGCATCAGCCGGTCAAANTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACATTCC TTGGTGGC NACAATCACCCAGCTTC AGCTNTNCATGGACA TGCTCG ANTGGAGCTGATTATGCTCACCAAGTCCCGNCNACATGC TTAGNTTATGAAACATCTNCTaa ] [+] EMBL CF196946 [ CCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCAnnnnna ] [+] EMBL AU062676 [ gcgnaGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTNTCATCATCTCGTTACAATCCAATTGATGNTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT NCACACGNAGCTTCATGGANGNAGCAACTNTTATCACTGTACAAGAATGTNAGG AAAGC ACAAATNCTGG CCATNGNTGTTG TACT CTTTTGTGGGNG NACATGTTTT ] [+] EMBL AU092015 [ GTGCCAAAATGTGGANCCGTGTCATTGGATTCCTTCCCAAGGTTGTTGCATCTAGTGANCCAAAACAACCCTGATGATTCTGGAATTTCCCACACGAAGCTTCATGGAAGAAGCAACTCTTATCNCTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGAaaaaa ] [+] EMBL BI805124 [ TTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC ACAGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTC ATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTaaaaa ] [-] EMBL D42943 [ CAGACGGCNAAATTGTATCCCNAGCAANCAATGAGNAAATTANCCAA AGCTGTAGGACCGTTNAANCGCATCAAGGGACA ACCCATGGTTGCCNAACAANCNCCCAGCNCCNAGCTACCCATGGACATTGCTCGAA TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCNNCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTTNCAGGTTGCTGNCAGAAA ] [+] EMBL AU108560 [ CC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTT CAGGTTGCTG CAGAAAANTNGNATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA] [+] EMBL AU166538 [ GC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGNACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGNATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGAaaaaaaaaa ] [+] EMBL BI811754 [ GCCCACATGC TCCGTTTATGAGACATCTCCTAAATATGTACCCCCTTGAGTCATCATCATCCGTGAAGAATGAATGCCCTGGGGCATCATCTACTCCATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCCAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCCACTGCCGTGCCCTTT CCGGTTGCTG CAGAAAACTTG TATATATATATATGATCCTTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCCACACTTACGTTTGATTTCCCCAGAACCGTTTAGCCAGAAGCTGTAACTCGAaaaaaaaaa ] consensusID : consensus_15637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 699 fasta sequence [CAAATGTGACCCGTGTCCATT-GATTCAT-CCAAGNTTGTTGCATCNTAGTGAAC--AAAACAAACCTGATGATTCTGGAATTTCCA-CAC-GAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA-GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA-TCTACTCA-A-TACTGAAAATCGTCTG-GGTG-TTTATG-CGTTGAAGTTATGTAATTGA-TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTG------TATATATATATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076046 [CAAATGTGACCCGTGTCCATT GATTCAT CCAAGNTTGTTGCATCNTAGTGAAC AAAACAAACCTGATGATTCTGGAATTTCCA CAC GAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATAAAAAAAAAA ] [+] EMBL AU088610 [ CGTGT CATTGGATTCATCCCAAGGTTGTTGCATC TAGTGGACCAAAAACAACCNTGATGATTCT GAATTTCCACCACGGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGG CCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAG AAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI811845 [ CAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCGACATGCTCAGTTTATGAGACATCTCCTAAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTC ACTGC GTGCCCTTTCAGGTTGCTGCAGAAAACTTG TATATATATATATGATCATTTAGGTTAAAAAAAAAA ] [+] EMBL BI810766 [ CATGCTCGATTGAGGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTAAATATGTACCCACGTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTCCAGTGCCCTTTCAGGTTGCT CAGAAAACTTG TATATATATATATGATCATTTAGGTTAAAAAAAAAA ] [+] EMBL BQ907731 [ cTCACTCTACTCACACTACTGAAAATCGTCTGCGGTGCTTTATGTCGTTGAAGTTATGTAATTGATTTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTG TATATATATATATGATCATTTAGGTTGAAAAAAAAAA ] consensusID : consensus_15637#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GGTGATGTGGCTCAATGCATTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTTTGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTTTACTGGTTATGAAGTGGTTGCTATCAGCTGAGTTTTAATTAACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTACTCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCA] [-] EMBL CB637275 [GGTGATGTGGCTCAATGCATTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTTTGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTTTACTGGTTATGAAGTGGTTGCTATCAGCTGAGTTTTAATTAACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTACTCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCA] consensusID : consensus_15637#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence [AACAAACCTGATGATTCTGAATTTCCACACGAAGCTTCATGGAAGNNNAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCCATCGTTGTTGCNNCTGCTTTGGTG] [+] EMBL AA749652 [AACAAACCTGATGATTCTGAATTTCCACACGAAGCTTCATGGAAGNNNAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCCATCGTTGTTGCNNCTGCTTTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAG 60 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 AGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGA 120 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 CTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTC 180 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACC 240 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGG 300 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 GGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTCGGTTTCACCGAGTGAGGT 360 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TGAGAGTCTCCTTAGGGGCACTGACGGCAAAGAGCACCAGAAGGAGCTTTCTGGCCAAGA 420 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TGCAGTTTCTGCCGAAGGTGATGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAA 480 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 GGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACAT 540 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 GGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTC 600 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 ATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGT 660 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 CAAATGTGACCCGTGTCCATTGATTCATCCAAGNTTGTTGCATCNTAGTGAACAAAACAA 60 consensus_15637#3 -------------------------------------------------------AACAA 5 consensus_15637#0 GCAAAATGTGAACCGTGTCATTGATTCATCCAAGGTTGTTGCATCTAGTGAACAAAACAA 720 consensus_15637#2 -----------------------------------------GGTGATGTGGCTCAATGCA 19 * * consensus_15637#1 ACCTGATGATTC--TGGAATTTCCACACGAA-GCTTCATGGAAGAAGCAACTCTTATCAC 117 consensus_15637#3 ACCTGATGATTC--TG-AATTTCCACACGAA-GCTTCATGGAAGNNN-AACTCTTATCAC 60 consensus_15637#0 ACCTGATGATTC--TG-AATTTCCACACGAA-GCTTCATGGAAGAAGCAACTCTTATCAC 776 consensus_15637#2 TTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTT 79 *** *** ** * ** * * *** * ** *** * * ** consensus_15637#1 TG--TACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTT 175 consensus_15637#3 TG--TACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCC-ATCGTTGTTGCNNCTGCTT 117 consensus_15637#0 TG--TACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCC-ATCGTTGTTGCTACTGCTT 833 consensus_15637#2 TGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTT 139 ** * * * ** **** ** ** * * * * * ** consensus_15637#1 TGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGG 235 consensus_15637#3 TGGTG------------------------------------------------------- 122 consensus_15637#0 TGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGG 893 consensus_15637#2 TACTGGTTATGAAGTGGTT--------------------GCTATCAGCTGAGTTTTAATT 179 * ** consensus_15637#1 TCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 295 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 953 consensus_15637#2 AACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 239 consensus_15637#1 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 355 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 1013 consensus_15637#2 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 299 consensus_15637#1 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 415 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 1073 consensus_15637#2 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 359 consensus_15637#1 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTAC 475 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTAC 1133 consensus_15637#2 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTAC 419 consensus_15637#1 TCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 535 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 1193 consensus_15637#2 TCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 479 consensus_15637#1 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 595 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 1253 consensus_15637#2 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 539 consensus_15637#1 GCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTGTATATATAT 655 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 GCTCCTGGTTTGTCAATTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTGATATATATA 1313 consensus_15637#2 GCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATA 599 consensus_15637#1 ATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 699 consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGC 1373 consensus_15637#2 TATATATATGATCA---------------------------------------------- 613 consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 TTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAGCAGAAGCTGTAACTCG 1433 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 ATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGA 1493 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ------------------------------------------------------------ consensus_15637#3 ------------------------------------------------------------ consensus_15637#0 AGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATAT 1553 consensus_15637#2 ------------------------------------------------------------ consensus_15637#1 ----------------------------------------- consensus_15637#3 ----------------------------------------- consensus_15637#0 CATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA 1594 consensus_15637#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||