These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCCATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAACTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATTGGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTCTTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGCCTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCATCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCACGCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGCAGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG] [+] EMBL CA757454 [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCCATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAACTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATTGGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTCTTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGCCTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCATCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCACGCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGCAGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG] consensusID : consensus_1564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC] [+] EMBL CA757930 [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1564#0 AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT 60 consensus_1564#1 AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT 60 ************************************************************ consensus_1564#0 GTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGC 120 consensus_1564#1 GTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGC 120 ****************************** ********** ************ ***** consensus_1564#0 GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCC 180 consensus_1564#1 GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAA 180 ******************************************* *********** ** consensus_1564#0 ATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAA 240 consensus_1564#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC-------- 232 * * * * * * * * *** * * ** * consensus_1564#0 CTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATT 300 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 GGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTC 360 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 TTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGC 420 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 CTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCA 480 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 TCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCAC 540 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 GCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGC 600 consensus_1564#1 ------------------------------------------------------------ consensus_1564#0 AGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG 647 consensus_1564#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||