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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1132 fasta sequence
[AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG-CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA-AGGTTCAAGGAGAGAGGCTGA-GGA-TAAGA-TAGTTCCTAGAGAAATCGATGCAGA-TGATTCTGATGTGGAA-CCCAG-AAGTGA-TGA-T-GAA-AGTGATGAGGA-TGA-TGA-CGACGA-TGATGACAC-TGAAGCTCTAATGGCAGAGCTTGAAAGA-ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA-GGTGGGA-TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAACTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAGCTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGTTGAGTT]
[+] EMBL AK111784 [AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACTTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAACTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAGCTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGTTGAGTT]
[+] EMBL AK112060 [ GTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAA ]
[+] EMBL CB964728 [ ctaaGTTACCTCACAAGGGAATAGC TGG GCGGGGATGACCACGG GG GCGG CGA CT GGCTCCGG CAAGGGCGG AACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGA CTCGCCG CCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTAGAAAGA ATCAAGCAAGA ]
[+] EMBL BU673452 [ gggAATAGCTGGGCCGCGGCGATGACCACGGCGGCGCGG CGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ]
[+] EMBL BU673221 [ CGGCGATGACCACGGCGGCGCGG CGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTCTAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCCACGACACTATCAGAAGTGA TTCCACCGTAAGTCTCTGCCGACGTACATGAGCTGATGCTGCCGgt ]
[+] EMBL CF326699 [ GGCGATGACCAC GCGGCGCGGCCGACCTGTGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGANTGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGA ]
[+] EMBL CB964590 [ CGATGA CACGGCGGCGCGG CGACCT GGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ]
[+] EMBL BI306205 [ GATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTCAGAA ]
[+] EMBL CB966069 [ TGA CACGGCGGCGCGG CGA CTGGGCTCCGG CAAGGGCGGCAACGAGCCAGGTCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ]
[+] EMBL BU673752 [ GACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGACATCACGAAAGAAAGAGCTGAAGAAAAGCTTCGAAAGGAACGCCAACAAGC ]
[+] EMBL CB964777 [ ACCACGGCGGCGCGG CGACCT GGCT CGGCCAAGGGCGGCAACGAG CAGTGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGCACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCACGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGCA CCCAGAAAGTGA AGA TAGAA AG ]
[+] EMBL CB965558 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ]
[+] EMBL AU070591 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGA ]
[+] EMBL CB964515 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGC ]
[+] EMBL CB964841 [ GCGGCGCGG CGA CTGGGCTCCGG CAAGGGCGGCAACGAG CA GGCGGCA CCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TG ]
[+] EMBL BU673131 [ CGGCCGACCTGGGCTCCGGCCAAGGGCGGCCACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCTCCTGCCTCGCCG CCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGAACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGACAGGTTCACGGAGAGAGGCTGACGGACTCCGACTAGTTCCTAGAGACATCGCTGCAGACTGATTCTGATGTGGAA CCCAG AAGTGACTGACT GAACAGTGATGAGGACTGACTGACCGACGACTGATGACCCTTGCAGCTCTAATGGCAGAGCT ]
[+] EMBL BI118752 [ GCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAACCCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTT ]
[+] EMBL BP184812 [ AACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGT ]
[+] EMBL OSR10011A [ AGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGGGTGGGA TGATGATGTTGTATTCAAGNAC ]
[+] EMBL AU032852 [ ATGAGGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTNCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCT GCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTAaaaaaaa ]
consensusID : consensus_15641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[ATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAAAGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGCATAAGCATCAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGCATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAGCTCTAATGGCAGCAGCTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA]
[+] EMBL CB965914 [ATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAAAGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGCATAAGCATCAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGCATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAGCTCTAATGGCAGCAGCTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA]
consensusID : consensus_15641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACACCCGAAACGTGTTCAATCAAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAAGTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCATGGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATATGACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAAAA]
[+] EMBL BI808962 [AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACACCCGAAACGTGTTCAATCAAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAAGTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCATGGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATATGACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAAAA]
consensusID : consensus_15641#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence
[CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAGGACACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTTAGGAGCGTAGAGGAAGCACTACTGTCAAAGGACAGTCTATGCTGAGGAGAGAGATAGGCGAAAGCACAAGCCTACTCTAGACTTCAGAGAGAGGCTGAGATAGATA]
[+] EMBL D42446 [CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAGGACACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTTAGGAGCGTAGAGGAAGCACTACTGTCAAAGGACAGTCTATGCTGAGGAGAGAGATAGGCGAAAGCACAAGCCTACTCTAGACTTCAGAGAGAGGCTGAGATAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGG 60
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ---------------------------------ATGACCACGGCGGCGCGGCCGACCTGG 27
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 GTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGG 120
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 GCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAG 87
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 GCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAG 180
consensus_15641#2 ------------AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCT 48
consensus_15641#1 TACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAG--GACAAC 145
consensus_15641#3 ----CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAG--GACA-C 53
consensus_15641#0 TACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAG--GACAAC 238
consensus_15641#2 GAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTT 108
** *** ***** * ** *** *** ** * **
consensus_15641#1 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGG 204
consensus_15641#3 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTT-AGGAGCGT-AGAGG 110
consensus_15641#0 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGG 297
consensus_15641#2 GTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACA----CCCGAAACGTGTTCAATC 164
** ****** * * ** * *** * * * * ** *
consensus_15641#1 AAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAA 264
consensus_15641#3 AAGCACTACT-GTCAAAGGACAG--TCTATGCTGAGGAGAGAGATAG--------GCGAA 159
consensus_15641#0 AAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAG------GCGGAAA 351
consensus_15641#2 AAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAA 224
** * * **** * * * ** **
consensus_15641#1 AGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGC---ATAAGCAT 321
consensus_15641#3 AGCACAAGCCTACTCT-----AGACTTCAGAGAGAGGCTGAG-ATAGAT---A------- 203
consensus_15641#0 AGCACAAGCCTACTCCTAGAAGGTTCAAGGAGAGAGGCTGAGGATAAG----ATAGTTCC 407
consensus_15641#2 GTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCAT 284
* * * * *
consensus_15641#1 CAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGC 381
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 TAGAGAAATCGATGCAGATGATTCTGATGTGGAACCCAGAAGTGATGATGAAAGTGATGA 467
consensus_15641#2 GGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATAT 344
consensus_15641#1 -ATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAG 440
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 -GGATGATGACGACGATGATGACACTGAAGCTCTAATGGCAGAGCTTGAAAGAATCAAGA 526
consensus_15641#2 GACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAA 404
consensus_15641#1 CTCTAATGGCAGCAG-----CTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA- 494
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 AAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGA 586
consensus_15641#2 AA---------------------------------------------------------- 406
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 TGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCT 646
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 TCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGA 706
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 CCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTC 766
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 TGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGC 826
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 CTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATA 886
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 TGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAA 946
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 AAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAA 1006
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 CTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAG 1066
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------------------------------------------------------------
consensus_15641#3 ------------------------------------------------------------
consensus_15641#0 CTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGT 1126
consensus_15641#2 ------------------------------------------------------------
consensus_15641#1 ------
consensus_15641#3 ------
consensus_15641#0 TGAGTT 1132
consensus_15641#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||