These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1132 fasta sequence [AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG-CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA-AGGTTCAAGGAGAGAGGCTGA-GGA-TAAGA-TAGTTCCTAGAGAAATCGATGCAGA-TGATTCTGATGTGGAA-CCCAG-AAGTGA-TGA-T-GAA-AGTGATGAGGA-TGA-TGA-CGACGA-TGATGACAC-TGAAGCTCTAATGGCAGAGCTTGAAAGA-ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA-GGTGGGA-TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAACTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAGCTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGTTGAGTT] [+] EMBL AK111784 [AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACTTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAACTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAGCTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGTTGAGTT] [+] EMBL AK112060 [ GTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGGGTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAA ] [+] EMBL CB964728 [ ctaaGTTACCTCACAAGGGAATAGC TGG GCGGGGATGACCACGG GG GCGG CGA CT GGCTCCGG CAAGGGCGG AACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGA CTCGCCG CCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTAGAAAGA ATCAAGCAAGA ] [+] EMBL BU673452 [ gggAATAGCTGGGCCGCGGCGATGACCACGGCGGCGCGG CGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ] [+] EMBL BU673221 [ CGGCGATGACCACGGCGGCGCGG CGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTCTAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCCACGACACTATCAGAAGTGA TTCCACCGTAAGTCTCTGCCGACGTACATGAGCTGATGCTGCCGgt ] [+] EMBL CF326699 [ GGCGATGACCAC GCGGCGCGGCCGACCTGTGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGANTGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGA ] [+] EMBL CB964590 [ CGATGA CACGGCGGCGCGG CGACCT GGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ] [+] EMBL BI306205 [ GATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTCAGAA ] [+] EMBL CB966069 [ TGA CACGGCGGCGCGG CGA CTGGGCTCCGG CAAGGGCGGCAACGAGCCAGGTCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ] [+] EMBL BU673752 [ GACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGACATCACGAAAGAAAGAGCTGAAGAAAAGCTTCGAAAGGAACGCCAACAAGC ] [+] EMBL CB964777 [ ACCACGGCGGCGCGG CGACCT GGCT CGGCCAAGGGCGGCAACGAG CAGTGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGCACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCACGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGCA CCCAGAAAGTGA AGA TAGAA AG ] [+] EMBL CB965558 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAA ] [+] EMBL AU070591 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGA ] [+] EMBL CB964515 [ CACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAG CAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGC ] [+] EMBL CB964841 [ GCGGCGCGG CGA CTGGGCTCCGG CAAGGGCGGCAACGAG CA GGCGGCA CCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TG ] [+] EMBL BU673131 [ CGGCCGACCTGGGCTCCGGCCAAGGGCGGCCACGAG CA GGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCTCCTGCCTCGCCG CCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGAACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGACAGGTTCACGGAGAGAGGCTGACGGACTCCGACTAGTTCCTAGAGACATCGCTGCAGACTGATTCTGATGTGGAA CCCAG AAGTGACTGACT GAACAGTGATGAGGACTGACTGACCGACGACTGATGACCCTTGCAGCTCTAATGGCAGAGCT ] [+] EMBL BI118752 [ GCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAACCCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAAGCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTT ] [+] EMBL BP184812 [ AACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAGGCGGAAAAGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGT ] [+] EMBL OSR10011A [ AGCACAAGCCTACTCCTAGA AGGTTCAAGGAGAGAGGCTGA GGA TAAGA TAGTTCCTAGAGAAATCGATGCAGA TGATTCTGATGTGGAA CCCAG AAGTGA TGA T GAA AGTGATGAGGA TGA TGA CGACGA TGATGACAC TGAAGCTCTAATGGCAGAGCTTGAAAGA ATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGGGTGGGA TGATGATGTTGTATTCAAGNAC ] [+] EMBL AU032852 [ ATGAGGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTNCAATGTTAAGAGAA GGTGGGA TGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTCTGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCT GCCTTCACGGCCTGCCTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATATGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAAAAAATCTATGCTTGTGTATTAaaaaaaa ] consensusID : consensus_15641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [ATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAAAGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGCATAAGCATCAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGCATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAGCTCTAATGGCAGCAGCTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA] [+] EMBL CB965914 [ATGACCACGGCGGCGCGGCCGACCTGGGCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAAAGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGCATAAGCATCAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGCATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAGCTCTAATGGCAGCAGCTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA] consensusID : consensus_15641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACACCCGAAACGTGTTCAATCAAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAAGTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCATGGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATATGACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAAAA] [+] EMBL BI808962 [AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACACCCGAAACGTGTTCAATCAAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAAGTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCATGGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATATGACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAAAA] consensusID : consensus_15641#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAGGACACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTTAGGAGCGTAGAGGAAGCACTACTGTCAAAGGACAGTCTATGCTGAGGAGAGAGATAGGCGAAAGCACAAGCCTACTCTAGACTTCAGAGAGAGGCTGAGATAGATA] [+] EMBL D42446 [CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAGGACACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTTAGGAGCGTAGAGGAAGCACTACTGTCAAAGGACAGTCTATGCTGAGGAGAGAGATAGGCGAAAGCACAAGCCTACTCTAGACTTCAGAGAGAGGCTGAGATAGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 AACCGCGTCGTCTCGTCTCGTCGAGGAGAGGATAGAGAATCGAATCCATCGCCGCCTAGG 60 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ---------------------------------ATGACCACGGCGGCGCGGCCGACCTGG 27 consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 GTTTCCTTCCTTGTCAATCGCGCGGCCGCGGCGATGACCACGGCGGCGCGGCCGACCTGG 120 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 GCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAG 87 consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 GCTCCGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAG 180 consensus_15641#2 ------------AGAGGAGCCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCT 48 consensus_15641#1 TACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAG--GACAAC 145 consensus_15641#3 ----CCTCCCGCGACCTCGCCGCCCACACCACCCACAAGCCCAGGAAAGAAG--GACA-C 53 consensus_15641#0 TACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGGAAAGAAG--GACAAC 238 consensus_15641#2 GAGTCCATAGTTGACAACGCCGGATCCTTCAATGTTAAGAGAAGGTGGGATGATGATGTT 108 ** *** ***** * ** *** *** ** * ** consensus_15641#1 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGG 204 consensus_15641#3 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGATGAACTT-AGGAGCGT-AGAGG 110 consensus_15641#0 ATAC-CCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGG 297 consensus_15641#2 GTATGTCAAGAACCACGGCTCGTGGAGAGACCCAGACA----CCCGAAACGTGTTCAATC 164 ** ****** * * ** * *** * * * * ** * consensus_15641#1 AAGCACTACTCGTCAAAGGACAAGTCCTATGCTGCAGGCAGCAGCAGCATCAGGCGGAAA 264 consensus_15641#3 AAGCACTACT-GTCAAAGGACAG--TCTATGCTGAGGAGAGAGATAG--------GCGAA 159 consensus_15641#0 AAGCACTACTCGTCAAAGGACAAGTCCTATGCTGAGGAGAGAGATAG------GCGGAAA 351 consensus_15641#2 AAACGACAACTATCAAGAAGTGATTTCACCCCGTAAGTGTTCTGCAGAGGGTACAATGAA 224 ** * * **** * * * ** ** consensus_15641#1 AGCACAAGCCTCCTCCTCACAAGGTTCAAGGCAGCAGCAGGCTGCAGGC---ATAAGCAT 321 consensus_15641#3 AGCACAAGCCTACTCT-----AGACTTCAGAGAGAGGCTGAG-ATAGAT---A------- 203 consensus_15641#0 AGCACAAGCCTACTCCTAGAAGGTTCAAGGAGAGAGGCTGAGGATAAG----ATAGTTCC 407 consensus_15641#2 GTGATGCTGCCGTTGTACGCCTGTTCACATGGCCATTCACGGCACGTGCCATGTCATCAT 284 * * * * * consensus_15641#1 CAGTTCCTCAGCAGCAAATCGATGCAGCATGCATTCTGCATGTGGCAACCCAGCAAGTGC 381 consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 TAGAGAAATCGATGCAGATGATTCTGATGTGGAACCCAGAAGTGATGATGAAAGTGATGA 467 consensus_15641#2 GGTCGTGAGATCAGCATGTGTTTCATGTGTTCATGTAATTTGAGTGGAAGATCTATATAT 344 consensus_15641#1 -ATGCATGCACACAGTGCATGCAAGGCATGCATGACGCACTGCATGCATGACACTGCAAG 440 consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 -GGATGATGACGACGATGATGACACTGAAGCTCTAATGGCAGAGCTTGAAAGAATCAAGA 526 consensus_15641#2 GACACCAACATGTAACATCTGCTTAATCTGGATGGCACATTTTTCCCCTAAAATGGAAAA 404 consensus_15641#1 CTCTAATGGCAGCAG-----CTTGAAAGCAATCAAGCACAAGCAAAGCAGCTGAAGCAA- 494 consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 AAGAAAGAGCTGAAGAAAACCTTAGAAAGGAACGCCAACAAGCAGAAGAGGAGGCTAAGA 586 consensus_15641#2 AA---------------------------------------------------------- 406 consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 TGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCT 646 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 TCAATGTTAAGAGAAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGA 706 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 CCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAGTTTC 766 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 TGCAGAGGTACATGAAGTGATGCTGCCGTTGTACGCTGTTCCCTGGCCTTCACGGCCTGC 826 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 CTGTCTCTGTCTGAGATCGCTGTGTTTCTGTTTCTGTAATTTGAGTGGAAGATCTATATA 886 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 TGACACAACTGTAACATCTGCTTAATCTGGATGGCACATTTTTCCACTAAAAATGGAAAA 946 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 AAAATCTATGCTTGTGTATTATTTGCTTGGTGGCTAAGCTTATGAATTGTTTTAATTCAA 1006 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 CTTTACCTTTTATACGTGTCCTCAAGCCAGATATACATGATGGTAATGCTAGACTGCTAG 1066 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------------------------------------------------------------ consensus_15641#3 ------------------------------------------------------------ consensus_15641#0 CTGTAACTTATTGATAAGAAAATATTCAACAATCATCAAAAGATTTCGGAGTGTTCCAGT 1126 consensus_15641#2 ------------------------------------------------------------ consensus_15641#1 ------ consensus_15641#3 ------ consensus_15641#0 TGAGTT 1132 consensus_15641#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||