These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [TTTTTTTTTTTTTTACACAANGTGGGGTGTTCATCGTCTTCGGCTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCATGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACTATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACGGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGGTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTGCTACTTTGATCATTGGCTCTACAGCCACCCCATGCTGCGCGCAAATCTGCTTGGCCTTGGCGAGAAGCGCCTGCGAGAGCTGCTGCTGAACTCGCTCTCGGCCACCGGTACCATTGTCTTGTGCCGTTCCGGCGCGTGCCCGATGGCATCCTAAAGAGGCCGCGGGAACTCCAACCTCGGCCGTCGCAGCCGACTGCACGCCCCAGTCACGAGCCGCGCGCTGTGCCCGATCGCCCC] [+] EMBL CA759785 [TTTTTTTTTTTTTTACACAANGTGGGGTGTTCATCGTCTTCGGCTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCATGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACTATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACGGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGGTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTGCTACTTTGATCATTGGCTCTACAGCCACCCCATGCTGCGCGCAAATCTGCTTGGCCTTGGCGAGAAGCGCCTGCGAGAGCTGCTGCTGAACTCGCTCTCGGCCACCGGTACCATTGTCTTGTGCCGTTCCGGCGCGTGCCCGATGGCATCCTAAAGAGGCCGCGGGAACTCCAACCTCGGCCGTCGCAGCCGACTGCACGCCCCAGTCACGAGCCGCGCGCTGTGCCCGATCGCCCC] consensusID : consensus_15674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 551 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTGAATAAGTAACAAAACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG-CACTTCGAATGATGCATACAGTAATTG-CTGACACTTCCAAGAAACAACCTT-TGTACAGG-TCCA-CGGCTGTGACTCCCAACGATC-AGT-AAATC-AACCTTTGATTCCTCAGCTG-CTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACCCCATGCTGCGCGCAGATCTG-TTGGCTTGGTCGAGGAGCGC] [-] EMBL CF314626 [TTTTTTTTTTTTTTTTTTTTTTTTTTGAATAAGTAACAAAACATACAC CATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGA ] [-] EMBL AU183708 [ TTTTTTTTTTTTTTTTTTTTTGGGAATAAGTAACAAAACATACACACATNTCACATATNTACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATNTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAANAAACAACCTT TGTACAGG TCCA CGGCTGTGACTCCCAACGATC A ] [-] EMBL AU101313 [ TTTTTTT TAAGTAACAAAACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTT TGTACAGG TCCA CGGCTGTGACTCCCAACGATC AGT AAATC AACCTTTGATTCCTCAGCTG CTTGACAT ] [-] EMBL BI796599 [ ttttTAAGTAACAAAACATACACACATATCACATATATACACAAG TGGGTG TCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGC TTGTTTATTGCA TGTTGAGGATAACACATCGACAATACACAAAGATTTTCA TGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTTGTGTACAGG TCCACCGGCTGTGACTCCCAA GATC AGT AAATC AA CTTTGATTCCTCAGCTG CTTGACATATCATCTCCTTAGGATCTCCTAC TTGATCATGGTCTCTACAG CA CCCATGCTGCGCGCAGATCTG TTGGCTTGGTCGAGGAGCGC] [-] EMBL AU108455 [ tTAAGTAACAAAACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGNCACTTCGAATGATGCATACAGTAATTGCCTGACACTTCCAAGAAACAACCTT TGTACAGGTTCCA CGGCTGTGACTCCAAACGATCAAGTAAAATCAAACCTTTGATTCCTCAGCTGCCTTGACAT ] [-] EMBL AK070914 [ CAAAACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTT TGTACAGG TCCA CGGCTGTGACTCCCAACGATC AGT AAATC AACCTTTGATTCCTCAGCTG CTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACCCCATGCTGCGCGCAGATCTGCTTGGCCTTGTCGAGGAGCGC] [+] EMBL CK085075 [ AAACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTT TGTACAGG TCCA CGGCTGTGACTCCCAACGATC AGT AAATC AACCTTTGATTCCTCAGCTG CTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACCCCATGCTGCGCGCA ] [-] EMBL CB677831 [ ACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTT TGTACAGG TCCA CGGCTGTGACTCCCAACGATC AGT AAATC AACCTTTGATTCGTCAG ] [-] EMBL CB677798 [ ACATACACACATATCACATATATACACAAGTTGGGTGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGATGATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGG CACTTCGAATGATGCATACAGTAATTG CTGACACTTCCAAGAAACAACCTT TGTACAGG TCCA CGTCTat ] consensusID : consensus_15674#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 519 fasta sequence [TTTTTTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC-AGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCT-TTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAANAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGNCTCTACAGCCACCCCATGCTGCGCGCAGATCTGCTTGGCCTTGTCGAGGAGCGCCTGCNAGAGCTGCTGCTG] [-] EMBL CF313780 [TTTTTTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCT NTATTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATT AGAT ] [-] EMBL AU181815 [ TTTTTTTTTTTTTTTAC AGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCT TTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAANAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGNCTCTACAGCCACCCCATGCTGCGCGCAGATCTGCTTGGCCTTGTCGAGGAGCGCCTGCNAGAGCTGCTGCTG] [-] EMBL AU161063 [ TTTTTTTTTTTTTTTAC AGCAACAAGAAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCT TTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGNTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGGCTCTACAGCCACCCCATGCTGCGCGCAGATCTGCTTGGCCTTGTCGAGGAGCGC ] [-] EMBL CF309070 [ AAGCGGATATTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTATTGTTTATTGCAGTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGG ] consensusID : consensus_15674#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 495 fasta sequence [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAGCTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCTTATACATTTGACTACATTTGTATCTACTAACCCTGCTCTAGACCACATGGACTGGGTTTATATTTTACAATCGACACATCATATCAGGGAGGGTAGAAT] [+] EMBL CF304376 [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAGCTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCTTATACATTTGACTACATTTGTATCTACTAACCCTGCTCTAGACCACATGGACTGGGTTTATATTTTACAATCGACACATCATATCAGGGAGGGTAGAAT] [+] EMBL CF304133 [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAGCTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCTTATACATTTGACTACATTTGTATCTACTAACCCTGCTCTAGACCACATGGACTGGGTTTATATTTTACAATCGAC ] [+] EMBL CF304158 [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAGCTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCTTATACATTTGACTACATTTGTATCTACTAACCCTGCTCTAGACCACATGGACTGGGTTTATATTTTACAATCGA ] [+] EMBL CF305125 [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAGCTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCTTATACATTTGACTACATTTGTATCTACTAACCCTGCTCTAAACCACATGGACTGGGTTTATATT ] [+] EMBL CF304835 [GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTTGTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTATCAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTCGCTGCTCAACTACTCAGCACATTGTTGTTAGTTGTTACTAGTTCAAGATATTCAGCATTTTTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTGCAACTGCAATTAGGTAAC ] consensusID : consensus_15674#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TAGCTGGCATCTGTTGCAGAACCGAAGACGATGAACACCCAACTTGTGTATATATGTGATATGTGTGTATGTTTTGTTACTTATTCACAATGTGTCTCGTTCATCTTGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTCCAAAAAAAAGGGGAAATTTTTTAAAACCCGAAAAAAAAACCCCTTTAAAGGGGGGAAAATTTAAACTGGGGAAAAAAAGGGCAAAAACTTTTCCCCGGGAAAAAATGGTAACCCCCAAAAATTCCAAAAAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCC] [+] EMBL CF312819 [TAGCTGGCATCTGTTGCAGAACCGAAGACGATGAACACCCAACTTGTGTATATATGTGATATGTGTGTATGTTTTGTTACTTATTCACAATGTGTCTCGTTCATCTTGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTCCAAAAAAAAGGGGAAATTTTTTAAAACCCGAAAAAAAAACCCCTTTAAAGGGGGGAAAATTTAAACTGGGGAAAAAAAGGGCAAAAACTTTTCCCCGGGAAAAAATGGTAACCCCCAAAAATTCCAAAAAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCC] consensusID : consensus_15674#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 321 fasta sequence [TTTTTTTGTTTTGGTTTTTTTTTTTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACTTTAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACC] [+] EMBL CF322259 [TTTTTTTGTTTTGGTTTTTTTTTTTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACTTTAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCAC ] [-] EMBL CF322260 [ TTTTTTGTTTTGTTTTTTTTTTTTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCGAATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGCTGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCTCCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACC] consensusID : consensus_15674#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [TTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGA] [-] EMBL CF313602 [TTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGCAAGATAATCTTGACTATTTACACAATACATTATTCAGTTATCTGAATATCATCTAATACGGCTTTGTTTATTGCATTGTTGAGGATAACACATCGACAATACACAAAGATTTTTATTGAGATTCGGA] consensusID : consensus_15674#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence [TAGCTGGCATCTGTTGCAGAACCGAAGACGATGAACACCCAACTTGTGTATATATGTGATATGTGTGTATGTTTTGTTACTTATTCACAATGTGTCTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGCCATGCCGTTA] [+] EMBL CF316319 [TAGCTGGCATCTGTTGCAGAACCGAAGACGATGAACACCCAACTTGTGTATATATGTGATATGTGTGTATGTTTTGTTACTTATTCACAATGTGTCTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGCCATGCCGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15674#2 ----------------------------------------------------TTTTTTTT 8 consensus_15674#6 ---------------------------------------------------TTTTTTTGT 9 consensus_15674#1 TTTTTTTTTTTTTTTTTTTTTTTTTTGAATAAGTAACAAAACATACACACATATCACATA 60 consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 -------------------------------------------------TTTTTTTTTTT 11 consensus_15674#4 ------------------------------------------------------------ consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 ------------------------------------------------------------ consensus_15674#2 TTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATAAATTTTTTTTT 68 consensus_15674#6 TTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTTTTTTTT 64 consensus_15674#1 TATACACAAGTTGGG-TGTTCATCGTCTTCGGTTCTGCAACAGATGCCAGCTACATGGAT 119 consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 TTTACACAANGTGGGGTGTTCATCGTCTTCGGCTCTGCAACAGATGCCAGCTACATGGAT 71 consensus_15674#4 ------------------------------------------------------------ consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 -GCGCTCCTCGACAAGGCCAAGCAGATCTGCGCGCAGCATGGGGTATGTATTATGTGCTT 59 consensus_15674#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGCAACAAGAA-GCGGATATTTATTTGCA 127 consensus_15674#6 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT-------------------TTTTTATTTGCA 105 consensus_15674#1 GATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAA-GCGGATATTTATTTGCA 178 consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 GATACTCCTAAAGGAAACGCCCTTACTTTACAGCAACAAGAA-GCGGATATTTATTTGCA 130 consensus_15674#4 -------------------------------------TAGCT-GGCATCTGTTGCAGAAC 22 consensus_15674#7 -------------------------------------TAGCT-GGCATCTGTTGCAGAAC 22 consensus_15674#3 GTTTCCGCACCTACTATGACCATAATTTCTCCTCATTAAACTTGTGAGAAGTTGAATTAT 119 consensus_15674#2 AGATAATCTTGACTATTTACACAATACATTA-TTCAGTTATCTGAATATCATCTAATACG 186 consensus_15674#6 AGATAATCTTGACTATTTACACAATACATTA-TTCAGTTATCTGAATATCATCTAATACG 164 consensus_15674#1 AGATAATCTTGACTATTTACACAATACATTA-TTCAGTTATCTGAATATCATCTAATACG 237 consensus_15674#5 ------------TTTTTTTGTTTTGGTTTTT-TTTTTTTATCTGAATATCATCTAATACG 47 consensus_15674#0 TGATAATCTTGACTATTTACACAATACATTA-TTCAGTTATCTGAATATCATCTAATACG 189 consensus_15674#4 CGAAGACGATGAACACCCAACTTGTGTATAT-ATGTGATATGTGTGTATGTTTTGTTACT 81 consensus_15674#7 CGAAGACGATGAACACCCAACTTGTGTATAT-ATGTGATATGTGTGTATGTTTTGTTACT 81 consensus_15674#3 CAAGCAGGATGTGCAGTACATCAGTATGAATGACCTCTTGTGTTTGTTTGGTC-GCTGCT 178 * * * * * * * * consensus_15674#2 GCTTTGTTTATTGCATTGTTGA-------GGATAACACATCGACAATACACAAAGATTTT 239 consensus_15674#6 GCTTTGTTTATTGCATTGTTGA-------GGATAACACATCGACAATACACAAAGATTTT 217 consensus_15674#1 GCTTTGTTTATTGCATTGTTGA-------GGATAACACATCGACAATACACAAAGATTTT 290 consensus_15674#5 GCTTTGTTTATTGCATTGTTGA-------GGATAACACATCGACAATACACAAAGATTTT 100 consensus_15674#0 GCTTTGTTTATTGCATTGTTGA-------GGATAACACATCGACTATACACAAAGATTTT 242 consensus_15674#4 TATTCACAATGTGTCTCGTTCATCTTGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 141 consensus_15674#7 TATTCACAATGTGTCTCGTTCA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAACACTG 136 consensus_15674#3 CAACTACTCAGCACATTGTTGTT------AGTTGTTACTAGTTCAAGATATTCAGCATTT 232 * *** * * * * * consensus_15674#2 TATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCG 299 consensus_15674#6 TATTGAGATTCGGA---------------------------------------------- 231 consensus_15674#1 TATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCG 350 consensus_15674#5 TATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACTTTAACTGGGCACTTCG 160 consensus_15674#0 TATTGAGATTCGGAAAGCTTATTTACTCCTGCTTCTTCACAACAAGAACTGGGCACTTCG 302 consensus_15674#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 201 consensus_15674#7 CCATGCCGTTA------------------------------------------------- 147 consensus_15674#3 TTTGTTGTTTGGCCATATCAGTAAGGGAAAATGCCATAGGTGTCCAATTTCATGTGTTTG 292 consensus_15674#2 AATGATGCATACAGTAATTGCTGACACTTCCAANAAACAACCTTTGTACAGGTCCACGGC 359 consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 AATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGC 410 consensus_15674#5 AATGATGCATACAGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGC 220 consensus_15674#0 AATGATGCATACGGTAATTGCTGACACTTCCAAGAAACAACCTTTGTACAGGTCCACGGG 362 consensus_15674#4 AAAAAAAAAACCCCTTTTTTCCCCTTCCAAAAAAAAGGGGAAATTTTTTAAAACCCGAAA 261 consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 CAACTGCAATTAGGTAACTGGAGATACTAGCTTGTAGTTACAAATAGTAGGAGATACTAG 352 consensus_15674#2 TGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCT 419 consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 TGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCT 470 consensus_15674#5 TGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCT 280 consensus_15674#0 TGTGACTCCCAACGATCAGTAAATCAACCTTTGATTCCTCAGCTGCTTGACATATCATCT 422 consensus_15674#4 AAAAAACCCCTTTAAAGGGGGGAAAATTTAAACTGGGGAAAAAAAGGGCAAAAACTTTTC 321 consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 CTTGTAGCTTGTGATCGGTTTGGCTCTTGTCTGTCTCGTCATCT--TATACATTTGACTA 410 consensus_15674#2 CCTTAGGATCTCCTACTTTGATCATTGNCTCTACAGCCACCCCATGCTGCGCGCAGATCT 479 consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 CCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACCCCATGCTGCGCGCAGATCT 530 consensus_15674#5 CCTTAGGATCTCCTACTTTGATCATTGTCTCTACAGCCACC------------------- 321 consensus_15674#0 CCTTAGGATCTGCTACTTTGATCATTGGCTCTACAGCCACCCCATGCTGCGCGCAAATCT 482 consensus_15674#4 CCCGGGAAAAAATGGTAACCCCCAAAAATTCCAAAAAAAAAAAAACCCGAAAACAAAAAG 381 consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 CATTTGTATCTACTAACCCTGCTCTAGA--CCACATGGACTGGGTTTATATTTTACAATC 468 consensus_15674#2 GCTTGGCCTTGTCGAGGAGCGCCTGCNAGAGCTGCTGCTG-------------------- 519 consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 G-TTGGCTTGGTCGAGGAGCGC-------------------------------------- 551 consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 GCTTGGCCTTGGCGAGAAGCGCCTGCGAGAGCTGCTGCTGAACTCGCTCTCGGCCACCGG 542 consensus_15674#4 GGAAAACCCC-------------------------------------------------- 391 consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 GACACATCATATCAGGGAGGGTAGAAT--------------------------------- 495 consensus_15674#2 ------------------------------------------------------------ consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 ------------------------------------------------------------ consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 TACCATTGTCTTGTGCCGTTCCGGCGCGTGCCCGATGGCATCCTAAAGAGGCCGCGGGAA 602 consensus_15674#4 ------------------------------------------------------------ consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 ------------------------------------------------------------ consensus_15674#2 ------------------------------------------------------------ consensus_15674#6 ------------------------------------------------------------ consensus_15674#1 ------------------------------------------------------------ consensus_15674#5 ------------------------------------------------------------ consensus_15674#0 CTCCAACCTCGGCCGTCGCAGCCGACTGCACGCCCCAGTCACGAGCCGCGCGCTGTGCCC 662 consensus_15674#4 ------------------------------------------------------------ consensus_15674#7 ------------------------------------------------------------ consensus_15674#3 ------------------------------------------------------------ consensus_15674#2 --------- consensus_15674#6 --------- consensus_15674#1 --------- consensus_15674#5 --------- consensus_15674#0 GATCGCCCC 671 consensus_15674#4 --------- consensus_15674#7 --------- consensus_15674#3 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||