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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1271 fasta sequence
[CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA-CAA-GATCTGACTGT-CTTGCAACCGAAGATGGTTCTACTGCT-CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC-TT-CGCAA-GAGCCACCT--GCACCTCCAAACAATA-T-CCTTTTCA-T-CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT-GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT-GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA-CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAAGTGTGCGGCCTTCTACT]
[+] EMBL CF294950 [CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGGGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCANCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCT ]
[+] EMBL CF293902 [ AATATCGTGGCCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAATTATGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGC ]
[+] EMBL AK103337 [ CTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATA ]
[+] EMBL CF279491 [ CTGCTCGTCTCGTGGTGCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGGCATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAA AGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCA ]
[+] EMBL C74030 [ GTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCG AAA CAA GATCTGACTGTCCTTGCAACCGAAGATGGTTCTACTGCTCCCAAAAGAGAAAAGAAAG AGCCAGANGAGAAAGCACCGGGGAAAAACCGACGAGCTGAAGAGG ]
[+] EMBL CB682395 [ CCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAGACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGG ]
[+] EMBL AU057632 [ CTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAAT ]
[+] EMBL CB670209 [ GGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGTGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTG ]
[+] EMBL D42868 [ TAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATNGGGCTGGTTATCANGCCTCACGCCTGGGCAAGGCTTT CGCAAGGNGCCACCTTGGAACTTCCAAACAATATT CCTTTTTAGT CCNGGNCTTt ]
[+] EMBL OS389U2B [ TAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATNGGGCTGGTTATCANGCCTCACGCCTGGGCAAGGCTTT CGCAAGGNGCCACCTTGGAACTTCCAAACAATATT CCTTTTTAGT CCNGGNCTTttcn ]
[-] EMBL CF279492 [ TTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAA AGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCT CAGGATTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTAAAAAAAAAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAAAATAGAAGTCTTTGTTGCTTAAAA ]
[+] EMBL AU031732 [ tccgGCGAAAACCAAGGTTCTGACTGT CTTGCAACCGANGATGNTTCTACTGCT CCAAAAGAGCAAAGANAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAANCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA TCCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTC TTGCTGCTAAAAAAAca ]
[+] EMBL OSR11581A [ A GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTA ]
[+] EMBL OSC2827A [ TGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTTCAAACAATA TCCCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGGATGATGCTCCAGATCCTGGTTCCAGCAGTACCCTGGTTTNAGGGAAGNTCGGATGATCGAGGCCAAGGCAGGGATTTCTTTTNGTNGGATACGGGGAC ]
[-] EMBL CF279322 [ AAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATANT CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ]
[-] EMBL CF293901 [ AAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ]
[+] EMBL AU029267 [ AAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTNCCCAAAGCANTGGGACTGGTTATCAAGCNTCACNCCTGGGCAAGAC TTCCGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATNTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ]
[-] EMBL CB682396 [ GCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAAGTGTGCGG ]
[-] EMBL CB670210 [ AATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGGGATTTTATACAATAAAGTGTGCGGCCTTCTACT]
[-] EMBL CF294951 [ AACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTCCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAAATCA CCCCATACAACCCAATGAATATATCCTACGCAAAGAAGAAAATAATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAAACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCT ]
consensusID : consensus_15677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACTGCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCTGACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAGCCACCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU057633 [GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACTGCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCTGACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAGCCACCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence
[CCGACGGCGGTCCACAACGATCGGCGATCCCCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACCAGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCCGGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGACATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAGCCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCC-AGGCATTGCT-TTT-GTGGAATACGAGGACGACA-GCCAGTCTAT-GGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACC-CCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA]
[-] EMBL CA763236 [CCGACGGCGGTCCACAACGATCGGCGATCCCCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACCAGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCCGGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGACATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAGCCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCC AGGCATTGCT TTT GTGGAATACGAGGACGACA GCCAGTCTAT GGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACC CCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA]
[+] EMBL BI805970 [ GTCCGGATGATCGAAACCAAGCCTAGGTATTGCTNTTTCGTGGAATACGAGGACGACATGCCAGTCTATAGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCTCCATACAACCCTATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCAC ATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCC ]
consensusID : consensus_15677#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[AGTACCCTGGTTTCGGAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATNTTGCNNTGCAGCTCTCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCTACGAAGAGG]
[+] EMBL AA749691 [AGTACCCTGGTTTCGGAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATNTTGCNNTGCAGCTCTCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCTACGAAGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGT 60
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTA 120
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTT 180
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGG 240
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 -----------------------------CCGACGGCGGTCCACA-ACGATCGGCGATCC 30
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GCAGGCATGGGTGGTCTTC-AGCGAAA--TTACCGCCGCCACAAATGCTTTCCGTGGACT 297
consensus_15677#1 ----------GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACT 50
consensus_15677#2 CCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACC 90
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GC-AGGAATTCGATTTTT-ATGGCAAAAGAATGCGAGTACAATATGCGAAAACAAGATCT 355
consensus_15677#1 GCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCT 110
consensus_15677#2 AGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCC 150
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGAGAAAAGAAAGAAGCAAGAG 415
consensus_15677#1 GACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAG 170
consensus_15677#2 GGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGAC 210
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCT 475
consensus_15677#1 GAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCT 230
consensus_15677#2 ATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAG 270
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAG 535
consensus_15677#1 GCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAG 290
consensus_15677#2 CCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 330
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CCACC-TGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 594
consensus_15677#1 CCACC-TGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 349
consensus_15677#2 CATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 390
consensus_15677#3 --------------------------AGTACCCTGGTTTCGG---AGTCCGGATGATCGA 31
consensus_15677#0 CATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 654
consensus_15677#1 CAT---GCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 406
************** * ***************
consensus_15677#2 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 450
consensus_15677#3 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATN-TTGCNNT 90
consensus_15677#0 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 714
consensus_15677#1 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 466
*************************************************** **** *
consensus_15677#2 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 510
consensus_15677#3 GCA-GCTCT-CAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATC-TACGAAGA 147
consensus_15677#0 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 774
consensus_15677#1 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 526
*** ***** ***************************************** **** * *
consensus_15677#2 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACT 570
consensus_15677#3 GG---------------------------------------------------------- 149
consensus_15677#0 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACT 834
consensus_15677#1 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACT 586
*
consensus_15677#2 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 630
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 894
consensus_15677#1 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 646
consensus_15677#2 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA-- 688
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAATATTTGGTCTTCATTCTTTTTGTTA 954
consensus_15677#1 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA------------ 694
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 ACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTT 1014
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAAT 1074
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGC 1134
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 CATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTT 1194
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 ------------------------------------------------------------
consensus_15677#3 ------------------------------------------------------------
consensus_15677#0 GAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAA 1254
consensus_15677#1 ------------------------------------------------------------
consensus_15677#2 -----------------
consensus_15677#3 -----------------
consensus_15677#0 GTGTGCGGCCTTCTACT 1271
consensus_15677#1 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||