These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1385 fasta sequence [CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG] [+] EMBL AK108574 [CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG] consensusID : consensus_157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760945 [CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_157#0 CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGC 60 consensus_157#1 ------------------------------------------------------------ consensus_157#0 TGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCG 120 consensus_157#1 ------------------------------------------------------------ consensus_157#0 CCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGT 180 consensus_157#1 ------------------------------------------------------------ consensus_157#0 CTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCC 240 consensus_157#1 ------------------------------------------------------------ consensus_157#0 TTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCC 300 consensus_157#1 ------------------------------------------------------------ consensus_157#0 TCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTC 360 consensus_157#1 ------------------------------------------------------------ consensus_157#0 CCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGC 420 consensus_157#1 ------------------------------------------------------------ consensus_157#0 AAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGA 480 consensus_157#1 ------------------------------------------------------------ consensus_157#0 ATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTG 540 consensus_157#1 ------------------------------------------------------------ consensus_157#0 GTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTG 600 consensus_157#1 ------------------------------------------------------------ consensus_157#0 GCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACA 660 consensus_157#1 ------------------------------------------------------------ consensus_157#0 ATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGC 720 consensus_157#1 --------------------------------------------------------CGGC 4 *** consensus_157#0 GAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTG 780 consensus_157#1 GAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTG 64 ******************* *************************** ** ******** consensus_157#0 ATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGG-TAGTTCCC 839 consensus_157#1 ATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCC 124 **** * ******************************************** ******** consensus_157#0 TTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATG 899 consensus_157#1 TTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATG 184 **** ************************************ ** *************** consensus_157#0 CATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTA 959 consensus_157#1 CATTT-GGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTA 243 ***** ****** *********************************** ********** consensus_157#0 TTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATG 1019 consensus_157#1 TTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATG 303 *********** ******************* ********************* ****** consensus_157#0 TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCC 1079 consensus_157#1 TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCC 363 ************************************************* ********* consensus_157#0 GTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 1139 consensus_157#1 GTACATCATGGCATGGCCTCCTT-TTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 422 *************** ******* ************************************ consensus_157#0 GGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCT 1199 consensus_157#1 TGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTT 482 ************************************* ****************** * consensus_157#0 ATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGA 1259 consensus_157#1 TCGAACCCC--TGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGA 540 ***** * ******** *********************** *********** *** consensus_157#0 TTT---TTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGG 1316 consensus_157#1 TTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGG 600 *** *** ***** ***** ************** *********************** consensus_157#0 GTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTA 1376 consensus_157#1 GGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAA 660 * ** ******************************************* ** ** * consensus_157#0 GTCAAGTTG 1385 consensus_157#1 AAAA----- 664 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||