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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence
[TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT]
[+] EMBL CF329030 [TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGA ]
[-] EMBL CF329029 [ TGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT]
consensusID : consensus_15703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 743 fasta sequence
[AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC-AACAGTGGAAA-CTTG-AAAAACTGCATCCGC-AAAGAACTGAAGTTGAACTAA-TCTTGTTT--GTT-CTCC-AATGCTTCC-AGCCC--TTGC--TTGGA-TTTGTACTT-CCATTGCTGGTC-AGCATCATGATGGAGGCTGGAGCATCAGCAACC-TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG-T-GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA]
[+] EMBL CB633035 [AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG TGGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTT ]
[-] EMBL CF312315 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGCCTTTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCCTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGAGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA]
[-] EMBL CB633034 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGG ]
[-] EMBL AK111314 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGG ]
[-] EMBL CA764627 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGG TTGGTCAAGGAAAGGGCAGGGGCCGCCG T ]
[-] EMBL CB667243 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGC ]
[-] EMBL AU174868 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACCTTTGNGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAA ]
[-] EMBL AU162061 [ AAACCGAATCTAACCCACTTGATACTACCGTGCTTCTGCAACAAACAGTGGAAACCTTG AAAAACTGCATCCGCAAAAGAACTGAAGTGGAACTAA CCTTGTTT GTC CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGANAAAATTGGATCGAAACAACTTATGCAANACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCC CCGNT G CGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAANAAAAACG ]
[-] EMBL OSC8021 [ AACAGTGGAAACCTTGAAAAAACTTCATCCNC AAAGAACTNAAGTGGAACTAANCCTTGTTTTGGTTCCTCCAAATGCTTCCAAGCCCCTTTGC TTGGANTTTGTACTTCCCATTGCTGGTCAACCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCG CG T GCC GCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACG ]
[-] EMBL AU174869 [ AACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTG ]
consensusID : consensus_15703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 677 fasta sequence
[TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC-TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA]
[+] EMBL CF334580 [TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCNTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGG ]
[-] EMBL CF335669 [ TTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTT ]
[+] EMBL CF335786 [ ttttttTAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACG ]
[-] EMBL CB679991 [ TGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGAATGCTGTCGAC ]
[-] EMBL CF302129 [ tTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGANAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACCAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCAAGCTTTGGTTGAGGAAAG ]
[+] EMBL CF302128 [ ttTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGC ]
[-] EMBL CF317486 [ CACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAA ]
[-] EMBL CF334579 [ TGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAG ]
[-] EMBL CF335785 [ GATTCTATCATCGCTCAGATCCCAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCT GGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA]
consensusID : consensus_15703#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC]
[-] EMBL CA766646 [AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC]
consensusID : consensus_15703#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 192 fasta sequence
[AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG]
[-] EMBL CF336244 [AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG]
[+] EMBL CF336245 [ TTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAAAAATGCCCTTCTTTTATTAATAAAAAATACTCAATTACCTTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAATCCAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15703#0 ------------------------TTTTTTAATAGAAAA-TACTCAATTACATTGATTCT 35
consensus_15703#2 TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAA-TACTCAATTACATTGATTCT 59
consensus_15703#1 ------AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCT 54
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 84
consensus_15703#2 TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 108
consensus_15703#1 TCAGTTTACATATACTTTTGTAGTACAA-AGTGGAGCTGAAAAGTTGACAAAAAATTCCT 113
consensus_15703#4 AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGT-----------------TTTTT 43
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 144
consensus_15703#2 CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 168
consensus_15703#1 CTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAG 173
consensus_15703#4 TTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAA 103
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 203
consensus_15703#2 ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 227
consensus_15703#1 ATCGAAACGATAAAAACATAA-AAGACAACACATGTTCTTGAAAACGAATCTAAACCACT 232
consensus_15703#4 ATAAAAATGCCATTCTATTATTAATAGAAAATAC-TCAATTACATTGATTCT---TCATT 159
consensus_15703#3 ---------------------------AACACATGTTCTTGAAAACGAATCTAAACCACT 33
** * * * * * * * *** ** *
consensus_15703#0 TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 263
consensus_15703#2 TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 287
consensus_15703#1 TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 284
consensus_15703#4 TTACATTACATTGATTCTACTCCT-CAGTCCATG-------------------------- 192
consensus_15703#3 TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 85
* * ** ** **** * * **** *
consensus_15703#0 CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTT 323
consensus_15703#2 CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGC----- 342
consensus_15703#1 CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCTT--- 341
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTT 145
consensus_15703#0 GAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCA 383
consensus_15703#2 ------------------------------------------------------------
consensus_15703#1 ------------------------------------------------------------
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 GAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCC 205
consensus_15703#0 TGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGAT 443
consensus_15703#2 ------------------------------------------------TTGGATCATGAT 354
consensus_15703#1 -------------------------GGATTTGTACTTCCATTGCTGGTCAGCATCATGAT 376
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 AACAAAAGAACTAAATCAGGAAT---ACTTGAATAATTCAGTCCTCATTCGACAAATCTC 262
consensus_15703#0 GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 503
consensus_15703#2 GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 414
consensus_15703#1 GGAGGCTGGAGCATCAGCAACCTTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGC 436
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 AAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATG 322
consensus_15703#0 TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 562
consensus_15703#2 TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 473
consensus_15703#1 TGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAAC 496
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 TAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACAC 382
consensus_15703#0 TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 622
consensus_15703#2 TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 533
consensus_15703#1 TTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAG 556
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 TTTCAAGTAATAAATCCCCCCTTGTCTCGTCC---------------------------- 414
consensus_15703#0 AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 682
consensus_15703#2 AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 593
consensus_15703#1 AGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGG 616
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 729
consensus_15703#2 AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 640
consensus_15703#1 AAAGGGCAGGGGCCGCCGTGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAG 676
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 AAAAAC-------TTTCTACTCCTTCAGTCCAT--------------------------- 755
consensus_15703#2 AAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA----------------------- 677
consensus_15703#1 AAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTA 736
consensus_15703#4 ------------------------------------------------------------
consensus_15703#3 ------------------------------------------------------------
consensus_15703#0 -------
consensus_15703#2 -------
consensus_15703#1 TTGGGCA 743
consensus_15703#4 -------
consensus_15703#3 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||