cluster # 15760

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Oryza sativa
cluster # 15760 cluster # 15760 Sequences # 24 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15760#0 length = 799 sequences # 15
consensus_15760#1 length = 577 sequences # 5
consensus_15760#2 length = 516 sequences # 1

consensus_15760#3 length = 490 sequences # 1
consensus_15760#4 length = 406 sequences # 1
consensus_15760#5 length = 348 sequences # 1

consensusID : consensus_15760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 799
fasta sequence

                              [CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCA-TGGCGGCGGCGCCG--GCGCTGNCGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK100915             [CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCA CGGCGGCGGCGCCG  GCGCCGCCGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAGTGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAA                                             ]
[+] EMBL CB685260             [           AGCGCGTATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCCCGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB680237             [           AGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCg ac                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU183644             [            GCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CNNANGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGNCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGG CACGCAAAGCTCGAGTNCCCTCTCTTCAAGACCACCGNCCCCGACATCAAGTNCATGCAGATCCACCACGAGGCGCGCCACCCCAAG TTCCCTTCGAGCCCGACAAG TTAACAACCTTCA TGGCGGCGcg                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU101043             [                      GCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGC GCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CATAGGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAGAGCTCGAGTACCCTCTCTGCAAGACCACCAACCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCNAAGCTCCCGTTTGAGCCCGACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU172683             [                             CGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCnc ng                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSC26831             [                                              GCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CNNANGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGCTCGAGTNCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTNCCCTTNGAGCCCNACAAGNTCAACAANCTTCA Ttg                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF325474             [                                                                                                 GAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OS1321616            [                                                                                                                               CACACGGCGAAGGAGATCGAGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGTGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGNTCGAGTGCCCTCTCTGCAAGACCACCGTCCNCGACATCAAGTCCATGNAGATCCACCACGAGGCGCGCNAACCCAAGNTCCCCTTCGAGCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C26865               [                                                                                                                                              ATCGCGGCGAAGATCGACG GGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGCTCGAGTNCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTNCATTGGCGGCGGCGCCGNNGCGCTtntgtcnc                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF292070             [                                                                                                                                                                                                                                                                                                                                                                                caaataggGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAAAAA         ]
[-] EMBL CB680238             [                                                                                                                                                                                                                                                                                                                                                                                                    GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAG GGAGAAAAAGGTGATGGCTAAATCCG                          ]
[+] EMBL AU223456             [                                                                                                                                                                                                                                                                                                                                                                                                     AGGCCGCCGCCTCCTCCTTCAAGCCCAAGCCCGGCGTCCCCGGCANCCTCAANAAGTAACCGCAATCGAATCCATCATCACCCGAATTTGCTACTAATNCCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATNATGTGCCGTGTNATAAATGCGTTNATTNGCGCACATATACATATGTGACCGTGTTCCGTCGCGTNTTNGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTNTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCCCTGCTCAAACAATTGCTAAATNTNAGTAAANAAAAAGGTNATGGCTAAATCCGTTTGCTCNAAAAAAAAAAAAAAAAAA]
[+] EMBL BI798726             [                                                                                                                                                                                                                                                                                                                                                                                                                                            cccGCA CCTCAAGAAGT ACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCC CCGCTCGCTCCGGTGTG    CTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTCAAAAAA         ]
[+] EMBL AU165284             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA            ]




>consensus_15760#0
CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAG
GAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCC
GAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGG
CGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCT
CGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGA
GGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCATGGCGGCGG
CGCCGGCGCTGNCGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGG
CGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTAC
TACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAA
TTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACA
TATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTAT
GTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCA
CTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTC
AAAAAAAAAAAAAAAAAAA

consensusID : consensus_15760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 577
fasta sequence

                              [CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG-GGCGGCGCCGGCGCCGCCGCCNCCNCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT-ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA--AAAAAAAAAAAAAAAAATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA]

[+] EMBL AU101042             [CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG GGCGGCGCCGGCGCCGCCGCCNCCNCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAN  AAAAAAAAAAANAAAA                                        ]
[+] EMBL BE040124             [                                                           ccACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCCGGCGCCGCCG   CCGGCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTG    CTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA  AAAAAAAAACTTAATCATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA]
[+] EMBL AU166775             [                                                                                                                                ccCCCCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATANATGCGTTGATTCGCGCACATANACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA  AAAAAAAAAAAAAA                                          ]
[+] EMBL AU093604             [                                                                                                                                                 CCGCCTCCTCCTCNAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCNAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCAAAAAAAAAAAAAAAAA                                       ]
[+] EMBL AU029397             [                                                                                                                                                                                                                           CCCGAATCNGCTACTACTAACCGCCCGCCGCCGTTCGCTCCGGTGTGCTTACTTGNTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTNGTCGGNATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGNTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA  AAAAAAAAAANAAAA                                         ]




>consensus_15760#1
CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGC
NACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAGGGCGGCGCCGGCG
CCGCCGCCNCCNCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCG
GCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCG
CCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACT
ACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGAC
CGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACT
ACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAA
ACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAAAAAAAAAAAAAAAAAAATC
CCATACTTCTACTATCACAACCTCTTCTTATCCTATA

consensusID : consensus_15760#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [AACCCGGCCAGAAGACCGCTGGCACAGAACAAGGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACATCAAGCTCCACTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCCCGCTCGCTCCGGTGTGCTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCATGGATGATAATGTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA]

[+] EMBL BI800288             [AACCCGGCCAGAAGACCGCTGGCACAGAACAAGGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACATCAAGCTCCACTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCCCGCTCGCTCCGGTGTGCTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCATGGATGATAATGTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA]




>consensus_15760#2
AACCCGGCCAGAAGACCGCTGGCACAGAACAAGGCCGCCCACCCCAAGCTCAGAGTGCCC
CCTCTGCAAGACCCCCGCCCCCGACATCAAGCTCCACTGCAGATCCACCACGAGGCGCCC
CACCCCAAGCTCCCCTTCGAGCCCGACAAGCCCGGCAGTCCGCGCCACCCTCAAGAAGTA
ACCCCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCCCGCTCGCTC
CGGTGTGCTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCGTGT
GATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTC
GCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTG
TCATGGATGATAATGTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAG
AAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA

consensusID : consensus_15760#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [ACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCTCGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCGGCGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCTCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAATCTGCTACTACTANCGNCTGCCGGCGNTCGTTNCGGTGTGCTTANTTGCTGCTGCTTGTGTTTTGAATTATTATACTGTGTATGATGTGCCGTGTGATAAATGNGTTGATTGGGGANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGTNAGTTATGNGTAATAGTTATGTGT]

[+] EMBL OSC02911             [ACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCTCGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCGGCGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCTCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAATCTGCTACTACTANCGNCTGCCGGCGNTCGTTNCGGTGTGCTTANTTGCTGCTGCTTGTGTTTTGAATTATTATACTGTGTATGATGTGCCGTGTGATAAATGNGTTGATTGGGGANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGTNAGTTATGNGTAATAGTTATGTGT]




>consensus_15760#3
ACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACG
CANAGCTCGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCC
ACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACG
GCGGCGGCGCGGCGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAG
CCCGGCGTCCGCGGCAGCTCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAATCTG
CTACTACTANCGNCTGCCGGCGNTCGTTNCGGTGTGCTTANTTGCTGCTGCTTGTGTTTT
GAATTATTATACTGTGTATGATGTGCCGTGTGATAAATGNGTTGATTGGGGANATATANA
TATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGTNAGTTATGNGTAAT
AGTTATGTGT

consensusID : consensus_15760#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAATCTGCTATTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGATTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCTCTGCTCAAACAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTTTAAAGGA]

[-] EMBL CB685261             [GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAATCTGCTATTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGATTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCTCTGCTCAAACAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTTTAAAGGA]




>consensus_15760#4
GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAA
CCGCAATCGAATCCATCATCCCCCGAATCTGCTATTACTACCGCCCGCCGCCGCTCGCTC
CGGTGTGATTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCC
CGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCT
TCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCA
ATGGTGTCAATGGATGATAATGTTTATGTCTGTCTCTGCTCAAACAATTGGTAAATCTGA
ATAAGGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTTTAAAGGA

consensusID : consensus_15760#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [CTGGGGCAGGACAAGGGCGGCCACGATAGCTCGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCCAAGCCCGGCGTNCGCGGCANCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTTTCTTGTTTTTGAATTATTTACT]

[+] EMBL AU093603             [CTGGGGCAGGACAAGGGCGGCCACGATAGCTCGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCCAAGCCCGGCGTNCGCGGCANCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTTTCTTGTTTTTGAATTATTTACT]




>consensus_15760#5
CTGGGGCAGGACAAGGGCGGCCACGATAGCTCGAGTGCCCTCTCTGCAAGACCACCGNCC
CCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGC
CCGACAAGCTCAACAACCTCCACGGCGGCGGCGNNGACGCGCNTCGTCTCGNNTTTGTAG
TGCCTGCCGGCTCCTCCTCCAAGCCCAAGCCCGGCGTNCGCGGCANCTCAAGAAGTAACC
GCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGTCCGTANGCCGCTCGNTCC
GGTGTGCTTTACTTTGCTTGCTGCTTTCTTGTTTTTGAATTATTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15760#1      ------------------------------------------------------------
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      ------------------------------------------------------------
consensus_15760#0      CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAG 60
consensus_15760#3      ------------------------------------------------------------
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      ------------------------------------------------------------
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      ------------------------------------------------------------
consensus_15760#0      GAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCC 120
consensus_15760#3      ------------------------------------------------------------
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      ------------------------------------------------------------
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      ------------------------------------------------------------
consensus_15760#0      GAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGG 180
consensus_15760#3      -----------------------------------------------------ACAGGGG 7
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      ------------------------------------------------------------
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      ------------------------------------------------------------
consensus_15760#0      CGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCT 240
consensus_15760#3      CGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCT 67
consensus_15760#5      ----------------------------CTGGGGCAGGACAAGGGCGGCCACG-ATAGCT 31
                                                                                   

consensus_15760#1      -------CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGA 53
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      ----------------------------AACCCGGCCAGAAGACCGCTGGCACAGAACAA 32
consensus_15760#0      CGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGA 300
consensus_15760#3      CGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGA 127
consensus_15760#5      CGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGA 91
                                                                                   

consensus_15760#1      GGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG-GGCGG 112
consensus_15760#4      ------------------------------------------------------------
consensus_15760#2      GGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACA-TCAAG 91
consensus_15760#0      GGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCATGGCGGCGG 360
consensus_15760#3      GGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGG 187
consensus_15760#5      GGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGG 151
                                                                                   

consensus_15760#1      CGCCG--GCGCCGCCGCCNCCNCCGGTGAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 166
consensus_15760#4      ---------------------------GAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 29
consensus_15760#2      CTCCA--CTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAA 149
consensus_15760#0      CGCCG--GCGCTGNCGCCGCCGCCGGTGAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 414
consensus_15760#3      CGCGG-----CGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCC---AA 239
consensus_15760#5      CGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCC---AA 208
                                                          **     * *** * *****   **

consensus_15760#1      GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 225
consensus_15760#4      GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAAT 88
consensus_15760#2      GCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAAT 209
consensus_15760#0      GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 473
consensus_15760#3      GCCCGGC-GTCCGCGGCAGC-TCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAAT 297
consensus_15760#5      GCCCGGC-GTNCGCGGCANC-TCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 266
                       ******* ** **** ** * *************  ****************  ******

consensus_15760#1      CTGCTACTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGCTT------ACTTGCTGCTG 278
consensus_15760#4      CTGCTATTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGATT------ACTTGCTGCTG 141
consensus_15760#2      CTGCTACTACTACCGCCCGC-C-CCGCTCGCTCCGGTGTG----------CTTGCTGCTG 257
consensus_15760#0      CTGCTACTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGCTT------ACTTGCTGCTG 526
consensus_15760#3      CTGCTACTACTANCGNCTGCCGGC-GNTCGTTNCGGTGTGCTT------ANTTGCTGCTG 350
consensus_15760#5      CTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTT 326
                       ****** ***** ** * *    * * *** * *******           ******** 

consensus_15760#1      CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATT 338
consensus_15760#4      CTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATT 201
consensus_15760#2      CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGT-CCGTGTGATAGATCCGTTGATT 316
consensus_15760#0      CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATT 586
consensus_15760#3      CTTGTG-TTTTGAATTATTA-TACTGTGT-ATGATGTGCCGTGTGATAAATGNGTTGATT 407
consensus_15760#5      TCTTGT-TTTTGAATTATT--TACT----------------------------------- 348
                         *    ************  * **                                   

consensus_15760#1      CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 398
consensus_15760#4      CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 261
consensus_15760#2      CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCG-CATGTTTTAGCTAT 375
consensus_15760#0      CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 646
consensus_15760#3      GGGG-ANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGT 466
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      GATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAAT 458
consensus_15760#4      GATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAAT 321
consensus_15760#2      GATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCA-TGGATGATAAT 434
consensus_15760#0      GATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAAT 706
consensus_15760#3      NAGTTATGNGTAATAGTTATGTGT------------------------------------ 490
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      GTTTATGTCTGTCACTGCTCAAA-CAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 517
consensus_15760#4      GTTTATGTCTGTCTCTGCTCAAA-CAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGC 380
consensus_15760#2      GTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 494
consensus_15760#0      GTTTATGTCTGTCACTGCTCAAA-CAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 765
consensus_15760#3      ------------------------------------------------------------
consensus_15760#5      ------------------------------------------------------------
                                                                                   

consensus_15760#1      TAAAAAAAAAAAAAAAAAAAATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA 577
consensus_15760#4      TAAA------------------TCCGTTTGCTCACTTTAAAGGA---------------- 406
consensus_15760#2      TAAA------------------TCCGTTTGCTCAAAAAAA-------------------- 516
consensus_15760#0      TAAA------------------TCCGTTTGCTCAAAAAAAAAAAAAAAAAAA-------- 799
consensus_15760#3      ------------------------------------------------------------
consensus_15760#5      ------------------------------------------------------------