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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 662 fasta sequence
[TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC-GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC-GGGATGTCGGGGC-GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA-GC-GGTTGAA-TTTGAAAGAGAGCA-AGATGATCCATTGAAACT-ATCA-GGG-AAAACCAGACAGCTTGGTC-TTATT-GTCTGTAGGGGTACAGCGGTGAT-GCTT-GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC-TTCCAATCTGATGGTGCATAAACCTGC-AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC-GTGTCTCTTATGAACA-CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC-AGATATATGAATCGCATTATGCTCTTGTTC-GGTTTGTTCAAAAAAANNNNNNNNNNNNNNNNNNNNNAAA]
[+] EMBL CF299026 [TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTG ]
[+] EMBL AK121665 [ aaaagAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCAC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTT ]
[+] EMBL BI796065 [ gACAC ACACCTTCAACCCCCGCATCCGCCGCCTCCTGCCACCACCCCCT ACTCCGATTTGAAGCGACCAGA GCC CGGCTAA GTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGC AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAA ]
[+] EMBL OS0505A [ ACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTCTTTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAA ]
[+] EMBL OSC03142 [ CAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG ANAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTNATGGTTT GTATCGg ]
[+] EMBL OSC1111 [ CAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGNGNCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTNCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGGTCTCCTAGTCAAGATCCATGCT TTCCAGTAGAGAGGC ]
[+] EMBL C97973 [ AACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAAAA ]
[+] EMBL AU166175 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCATCTAAACTTGGTGCTTGATGAA GCGGGTTGAATTTTNAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATTNGTCTGTAGGGGTACAGCGGTGAT GCTTGGTATCGCCAACCGTTGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCAT AACCTGC AGGAGCTGATGGGTNTCCTAGTCAAGATCCATGCTCTCCaatana ]
[+] EMBL C73988 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGG ACGGACGAGATTGCCAA CCC TTCCAATCTGATGGTGCATAAACCTNCAAGGAGCTGATGGTTCTCCTGGT AAGATCCATG TTTTCCAGTAGAGn ]
[+] EMBL AU164752 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCAT AACCTGC AGGAGCTTATNGGTCTCCT ]
[+] EMBL AU057788 [ ATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCT ]
[+] EMBL CA754240 [ CCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCNACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTCGGGGTTGTTCAAAAANNNNNNNNNNNNNNNNNNNNNNNAAA]
[+] EMBL AU164753 [ CCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC NGATAaaaaaaaaa ]
[-] EMBL BI306682 [ ctcgttccgCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC ]
[+] EMBL BI797082 [ gcccgGCGGCTAAAGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCCTCGACAAGGGCGTCCAGGTCAAGCTCACC GCGCCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACTGATCA GGGCAAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCTGTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGCATCCCATTATGCTCTTGTTC GGTTTGTTCAAAA ]
[+] EMBL BI796333 [ GTCCGGGGATTTCGGGGCTCCAAGGAGAC GTGCT GACCTGCCCAA TTCGTCGACAAGGGCGTCCAGTTCAAGCTCACCGGC GCAGGCAAGTTACAGGGACTTTGAA GGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAACCC GGTTGAA TTTGAAAGAGAGCACAGATGATCCATTGAAACT ATCACGGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGT CCACAGTCTCTTATGACTC GTGTCTCTTATGAACACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTaaaaaaa ]
[+] EMBL BI797588 [ AGACGGTGCTGGACCTGCCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAAGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAAAA ]
[+] EMBL AU058304 [ CAAGCTCACCGGCGGCAGGCAAGTTACAGGGCCTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGNATTAaaaaaa ]
[+] EMBL AU174359 [ CAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCNGTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTNTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTaaaaaaaa ]
[-] EMBL CF332224 [ G AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATTGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCATAAAAAa ]
consensusID : consensus_15772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[AGGTCTATGACCCAGCTTCTAAACTTGGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTATCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGGTCTTTAAGGGGTACACGCGGTAGATGCTTGTATCCCCAAACCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGCCAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTCCTAGTCAAGATCCATGGCTTCTCCCAAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGGTGCGCCCACAGTCTCTTATGGACTCGTGTCTCTTATGGACCACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGACCTTGCTTTGTGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAAAA]
[+] EMBL BI800290 [AGGTCTATGACCCAGCTTCTAAACTTGGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTATCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGGTCTTTAAGGGGTACACGCGGTAGATGCTTGTATCCCCAAACCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGCCAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTCCTAGTCAAGATCCATGGCTTCTCCCAAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGGTGCGCCCACAGTCTCTTATGGACTCGTGTCTCTTATGGACCACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGACCTTGCTTTGTGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAAAA]
consensusID : consensus_15772#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CAACCCCCGCATCCGCCACCGCCGCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGARGGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATGAAGCCGGTTGAATTTGAAAGAGAGCSAGATGATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTTGGTCTTATTGSCTSTAGGGGBTACMACMSSHTGAADCSCTGTATCGCCCAMCCSATRGGACACGACGMGAGTTGYCCAMACCCTTCCAATMTGATA]
[+] EMBL AA752673 [CAACCCCCGCATCCGCCACCGCCGCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGARGGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATGAAGCCGGTTGAATTTGAAAGAGAGCSAGATGATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTTGGTCTTATTGSCTSTAGGGGBTACMACMSSHTGAADCSCTGTATCGCCCAMCCSATRGGACACGACGMGAGTTGYCCAMACCCTTCCAATMTGATA]
consensusID : consensus_15772#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[TGAAGGGNTATTGACCAGCTTCTAAACTTGGNGCTTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNTGATCCATTGAAACTATGCAGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029293 [TGAAGGGNTATTGACCAGCTTCTAAACTTGGNGCTTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNTGATCCATTGAAACTATGCAGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15772#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[GGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTAGAACAGCGGTGTATGCTTGTATCGCCAACCGATGGAACGGACGAAATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGAGCTGATGGTTCTCCCTAATCAAGATCCATGCTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGGGTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGTGGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGCCTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG]
[+] EMBL AA754178 [GGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTAGAACAGCGGTGTATGCTTGTATCGCCAACCGATGGAACGGACGAAATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGAGCTGATGGTTCTCCCTAATCAAGATCCATGCTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGGGTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGTGGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGCCTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG]
consensusID : consensus_15772#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[NNNTTCNGGGTGCAGGATTCGGCACGAGGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGANATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAANATCCATGCTCTCCCAGTANANANGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAGATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA]
[+] EMBL AA752748 [NNNTTCNGGGTGCAGGATTCGGCACGAGGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGANATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAANATCCATGCTCTCCCAGTANANANGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAGATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15772#1 ------------------------------------------------------------
consensus_15772#5 ------------------------------------------------------------
consensus_15772#3 ------------------------------------------------------------
consensus_15772#4 ------------------------------------------------------------
consensus_15772#0 TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCCG 60
consensus_15772#2 ------------------------------------------------------------
consensus_15772#1 ------------------------------------------------------------
consensus_15772#5 ------------------------------------------------------------
consensus_15772#3 ------------------------------------------------------------
consensus_15772#4 ------------------------------------------------------------
consensus_15772#0 CCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTC 120
consensus_15772#2 ------------------------------------------------------------
consensus_15772#1 ------------------------------------------------------------
consensus_15772#5 ------------------------------------------------------------
consensus_15772#3 ------------------------------------------------------------
consensus_15772#4 ------------------------------------------------------------
consensus_15772#0 GGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAA 180
consensus_15772#2 ------------------------------------------------------------
consensus_15772#1 ----------------------------------AGGTCTATGACCCAGCTTCTAAACTT 26
consensus_15772#5 ------------------------------------------------------------
consensus_15772#3 -------------------------------TGAAGGGNTATTGACCAGCTTCTAAACTT 29
consensus_15772#4 ------------------------------------------------------------
consensus_15772#0 GCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTT 240
consensus_15772#2 ------------------------------------------------------------
consensus_15772#1 GGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTA 86
consensus_15772#5 -------------------------------------NNNTTCNGGGTGCAGGATTCGGC 23
consensus_15772#3 GGNGC-TTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNT-GATCCATTGAAACT--- 84
consensus_15772#4 ------------------------------------------------------------
consensus_15772#0 GGTGC-TTGATGAAGCGGTT-GAATTTGAAAGAGAGCAAGAT-GATCCATTGAAACT--- 294
consensus_15772#2 ----------------------------------------------------CAACCCCC 8
consensus_15772#1 TCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGG-TCTTTAAGGGGTACAC---GCG 142
consensus_15772#5 ACGAGGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 73
consensus_15772#3 ATGCAGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 134
consensus_15772#4 ------GGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTAGAACA-GCG 47
consensus_15772#0 -ATCAGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 343
consensus_15772#2 GCATCCGCCACCGCCGCC--ACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCG 66
* * * * * * ** * * * * * * * * ***
consensus_15772#1 GTAGATGCTTGTATCCCCAAA-CCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGC 201
consensus_15772#5 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGANATTGCC--AACCCCT--T 123
consensus_15772#3 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAGATTGCC--AACCCCT--T 184
consensus_15772#4 GTGTATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAAATTGCC--AACCCCT--T 98
consensus_15772#0 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAGATTGCC--AACCCCT--T 393
consensus_15772#2 GCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGA 126
* * * * * * * * * * * ** * * * *
consensus_15772#1 CAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTC----CTAGTCAA 257
consensus_15772#5 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 173
consensus_15772#3 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 234
consensus_15772#4 CCAATCTG-ATGGTGC---ATAAACCT-GCAG-AGCTGATGGTTCTCC----CTAATCAA 148
consensus_15772#0 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 443
consensus_15772#2 CAAGGGCGTCCAGGTC-----AAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGAR 181
* * * * * ** * * * ** * * ** *
consensus_15772#1 GATCCATGGCTTCTCCCAAGTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 311
consensus_15772#5 NATCCATG--CTCTCCCA-GTANANANG--CCTTTGTATT-AACTC---ATGTAATCTGG 224
consensus_15772#3 GATCCATG--CTCTCCCA-GTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 285
consensus_15772#4 GATCCATG--CTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGG 206
consensus_15772#0 GATCCATG--CTCTCCCA-GTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 494
consensus_15772#2 GGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATG---AAGCCG--GTTGAATTTGA 236
* * * * * **** * ** * * * **
consensus_15772#1 GTGCGCCCACAGTCTCTTATGGACTC-GTGT---CTCTTAT-GGACCACCCAGGT--GGT 364
consensus_15772#5 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 270
consensus_15772#3 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 331
consensus_15772#4 GTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGT 266
consensus_15772#0 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 540
consensus_15772#2 -------AAGAGAGCSAGATG-ATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTT 288
* *** * * ** * * * *
consensus_15772#1 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGA-CCTTGCTTTG- 411
consensus_15772#5 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGATCCTTGCTTTG- 318
consensus_15772#3 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAAA------------ 368
consensus_15772#4 GGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGC 326
consensus_15772#0 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGATCCTTGCTTTG- 588
consensus_15772#2 GG--TCTTATTGS---CTSTAGGGGBTACMACMSS------HTGAADCSCTGTATCGCCC 337
** * ** * * ** ** *
consensus_15772#1 -------TGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAA 464
consensus_15772#5 -------TGTCAG--ATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA- 368
consensus_15772#3 ----------AAAAAAAAAAAAAA------------------------------------ 382
consensus_15772#4 CTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG----- 381
consensus_15772#0 -------TGTCAG--ATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAN 639
consensus_15772#2 AM-------CCSATRGGACACGA--CGMGAGTTGYCCAMACCCTTCCAATMTGATA---- 384
*
consensus_15772#1 AA--------------------- 466
consensus_15772#5 -----------------------
consensus_15772#3 -----------------------
consensus_15772#4 -----------------------
consensus_15772#0 NNNNNNNNNNNNNNNNNNNNAAA 662
consensus_15772#2 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||