|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1454 fasta sequence
[GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA-AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT-ATGTCATCTTTGTTCCGCTCCGGTGGATC-TACT-ACCGCTAT-AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC-ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA-GGAAGAGCAGCCAGAGTCACATGGCCTTATGT-GGGGGACAAATCATACCTGTGGACAT-GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT-CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC-TCAT-GTACATACTAC-TCCAAGCGCTGTT-CA-CGGTGGCGACA-ATGGCGC-TTACCGTTCCC-ATATT-CCTGTCCT-TCCAGATGCAT-GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA-ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG-CCAGAATG-CTGAAGAATCA-CAAGGGGACCTGTCAG-CAAACGG-CCAG-CACTCATCCGAG-CATAGCTAAGTCA-CTGA-AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA-CA-CTGTGGATAGCTTCTCTGTGTG-TTGTGTGCTCGAAA-CAAATTAT-CCATGTT---CTGTTGGGTTGAGAATT-TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAATATTTTTCTTTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTTCCGTGCGTGAAAAAAAAAAAAAAAA]
[+] EMBL AK069774 [GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA GGAAGAGCAGCCAGAGTCACATGGCCTTATGT GGAGGACAAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTT ]
[+] EMBL CB630683 [ GGGCGTGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCACTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA GGAAGAGCAGCCAGAGTCACATGGCCTTATGT GGGGGACAAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTNAAGGAT CCTGAAGTCA ]
[+] EMBL CA767442 [ AGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGT CACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGACTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGNTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATNCAGAANGAAAGAGCAGCCAGAGTCACATGGCCTTATGTGGGGGGACAAATCATACCTGNGGACATGGGCTGGTTGCTGGTCCTCTAGCTGCTTACACCCTGGGGCAACTTATGGATTTTCTCANAGTNAA GGGCTGCGTCGGNAAAGGCTGNTNAAGGAT CCTGNAGTCATGA NTCATACAGGGAGCTC ]
[+] EMBL OS1252A [ GAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGNGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTNCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGNTCCGGTGG ]
[+] EMBL C28719 [ GACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCC GCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTNTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTNTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACAATTTTCTCCTTGTTATGATTCTNTTCTATCCAAAGGATG ]
[+] EMBL AU062596 [ TGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCTNATGTCATCTTTGTTCCGCTCCGGTGGATCTTACTAACCGCTATAAAGAAATGGCATTAC ]
[+] EMBL AU062656 [ TGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTG CGCNGCCGCGGANAGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCG TTNCTTNGGCATTAATTGTGTGGCG TNCAGTTTGGTTTTAAGCTCAATTTGATAAA TTG TAGTGT CNGA TCACC TTTG CTGGGATAG TATATTNA TATCC GTGGTGGAt ]
[+] EMBL CF319219 [ GGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTCCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTA ]
[+] EMBL CF324603 [ GGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGT ]
[-] EMBL CB630684 [ AAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTT ]
[+] EMBL AU108583 [ GTCCCCCTAGCTGCTTACACCCTGTGGCAANTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCCTGAAGTCATGACATCATACAGGGAGCTTTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAAAAAAAAAAAaaa ]
[+] EMBL BI798670 [ GTGGAGACTCAGCGGGCTTCTT GCGACAGGAACC GCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACACATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA C AGGGGACCTGTCAG C AACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCCAACCATCGC AACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA C AATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAAA ]
[+] EMBL BI798585 [ GAAACTCAGCGGGCTTCTTGGCGACAGGAACCGCCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACCTGGACACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGACAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CACCTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAACCAAATTAT CCATGTT CTGTTGGGTTGAGAATTCTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAA ]
[+] EMBL BI798286 [ AGACTCAGCGGGCTTCTT GCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CACCGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACC AACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA C AATTAT CCATGTT CT TT GGTTGAGAATT TTGATGCGTGTGTGA GTTTGATCTATTCAGACTCCAGCCAGGGACCATTTCTCAGGTAGAAAAA ]
[+] EMBL BI799355 [ GCGACAGGAACC GCCACGTCAT GTACATACTACGTCCAAGCGCTGTT CAGCGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCTGTCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCCAGAATGCCTGAAGAATCACCAAGGGGACCTGTCAGCCAAACGGCCCAGCCACTCATCCGAGCCATAGCTAAGTCACCTGA AAAACCCAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CACCTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAA ]
[+] EMBL AU093069 [ ant TCATGGTACATACTAC TCCAAGCNCTGTT CA CGGTGGCGACA ATGCGGCTTTACCGTTCCCAATATTCCCTGTCCT TCCAAATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTNATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATNAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTNAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTNAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAaaaaaaaa ]
[+] EMBL BI798260 [ GTACATACTAC TCCAAGC CTGTT CA CGGT GCGACA ATGGCGC TTACCGTTCCC ATATT CCTGGTCT TCCAGATGCATGGTGTTCTTCCAGATACTCAAGGTGTGCGCTTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGCCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGA CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCA CAAACGC CCAG CACTCATCCGAG CATAG TAAGTCA CTGA AAAACC AACCATCGC AACGGTA CATTTTTCAGTTTTTCACCAGTTAATA C CTGTGGATAGCTTCTCTGTGT TTGTGTGCTCG AA CCAATTA CCATGTT CTGTTGGTTTGAGAATT TTGATGCGTGT TGA GTTTGATCTATTCAGACTCCAGCCAGGGA CATTTCTCAGGTAGAAAAA ]
[+] EMBL BI799654 [ ACTAC TCCAAGC CTGTTCCA CGGT GCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA C AGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACC AACCATCGC AACGGTA CATTTTTCAGTTTTTCACCAGTTAATACCC CTGTGGATAGCTTCTCTGTGTGCTTGTGTGCTCGAAA CAAATTATCCCATGTTTTCCTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACT CAGGCAGGGA CATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAAaaaaaaaa ]
[+] EMBL C98229 [ TT CN CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCAAGATNCTCAAGGTGTGCGCGTCGACATGGN ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGACCATGACAAATTTCCGTGCGTGAAAAAAAAAAAAAAAA]
[+] EMBL AU166500 [ TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAAAAAAAAAAAaaa ]
consensusID : consensus_15787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence
[ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA]
[-] EMBL CF319220 [ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAA ]
[-] EMBL CF310017 [ GTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA]
consensusID : consensus_15787#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence
[CATGGACTGAAGGAGTAGAAAAATCCCAAACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGAGGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATGTACATACTACTCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTC]
[+] EMBL CF310016 [CATGGACTGAAGGAGTAGAAAAATCCCAAACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGAGGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATGTACATACTACTCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTC]
[+] EMBL CF329717 [ TCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGA ]
consensusID : consensus_15787#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence
[AGCACAGAAAGCAAACAACATCTGGTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATACTACTCCAAGCNCTGTTCACGGTNGCGACAATNNCNTTACCGTTCCCATATTCCTGT]
[+] EMBL AA750910 [AGCACAGAAAGCAAACAACATCTGGTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATACTACTCCAAGCNCTGTTCACGGTNGCGACAATNNCNTTACCGTTCCCATATTCCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTC 60
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 GGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGAAGT 120
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 CCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCAC 180
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 CAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGG 240
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 ATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTG 300
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 CCTGTTCTATGTCATCTTTGTTCCGCTCCGGTGGATCTACTACCGCTATAAGAAATGGCA 360
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTT 420
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 CTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGC 480
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTCATTTGATAAACTTGTTAG 540
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 --------------------------------CATGGACTGAAGGAGTAGAAAAATCCCA 28
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACA 600
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 AACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGA 88
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 AACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGG 660
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 GGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTG 148
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 GGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTG 720
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 GCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 208
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 GCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 780
consensus_15787#1 -----------ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 49
consensus_15787#2 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 268
consensus_15787#3 ------------------------------------AGCACAGAAAGCAAACAACATCTG 24
consensus_15787#0 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 840
consensus_15787#1 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 109
************************
consensus_15787#2 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATGTACATAC--TAC 324
consensus_15787#3 GTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATAC--TAC 82
consensus_15787#0 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATGTACATAC--TAC 896
consensus_15787#1 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATATGCATGTGGTCT 167
********* ****** ******** **** **************** * *** *
consensus_15787#2 TCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCC 384
consensus_15787#3 TCCAAGCNCTGTTCACGGTNGCGACAATNNCN-TTACCGTTCCCATATTCCTGT------ 135
consensus_15787#0 TCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCC 956
consensus_15787#1 TCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGA 227
**** ** * *** * * * * * *****
consensus_15787#2 AGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGA-AGC 443
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 AGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGA-AGC 1015
consensus_15787#1 TGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGG 287
consensus_15787#2 TTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATG 503
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATG 1075
consensus_15787#1 CTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACT 347
consensus_15787#2 AAGCC---CATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTG 560
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 AAGCC---CATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTG 1132
consensus_15787#1 CATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAG 407
consensus_15787#2 TCAGCAAACGGCCAGCACTC---------------------------------------- 580
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGC 1192
consensus_15787#1 TTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAAT 467
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 AAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTG 1252
consensus_15787#1 TATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGAC 527
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTG 1312
consensus_15787#1 TCCAGGCAGGGAGCATTTCTCAGGTAAAAAATTATTTTTCTTTTCCCAGTCAACCCATGA 587
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 AGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAATATTTTTCT 1372
consensus_15787#1 TATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA--------------- 632
consensus_15787#2 ------------------------------------------------------------
consensus_15787#3 ------------------------------------------------------------
consensus_15787#0 TTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTTCCG 1432
consensus_15787#1 ------------------------------------------------------------
consensus_15787#2 ----------------------
consensus_15787#3 ----------------------
consensus_15787#0 TGCGTGAAAAAAAAAAAAAAAA 1454
consensus_15787#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||