These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCGTCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAACAAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGGGCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCACGCGGCGACCAGGGCAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCACGACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAGGCGGGCATCCGGTTCAGGCGTCCTCATCATCCGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGGAGTATGACACATGGGACCATATATTTTTAATAAATAAGGTGCTGATTGGATTGCCCAAAAAAAAAA] [+] EMBL BI813337 [CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCGTCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAACAAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGGGCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCACGCGGCGACCAGGGCAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCACGACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAGGCGGGCATCCGGTTCAGGCGTCCTCATCATCCGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGGAGTATGACACATGGGACCATATATTTTTAATAAATAAGGTGCTGATTGGATTGCCCAAAAAAAAAA] consensusID : consensus_1582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [AACACCGGGCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCCACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCCGCCAGGAGAGATGACCGCCGCNACGACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAGGCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATGAGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGGTTGCCACCGCNGNTNA] [-] EMBL OSC577 [AACACCGGGCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCCACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCCGCCAGGAGAGATGACCGCCGCNACGACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAGGCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATGAGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGGTTGCCACCGCNGNTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1582#0 CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCG 60 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 TCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAAC 120 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 AAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGG 180 consensus_1582#1 ----------------------------------------------------AACACCGG 8 ******** consensus_1582#0 GCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACC- 239 consensus_1582#1 GCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCC 68 ****** ************************* ***** ** ****** ********** consensus_1582#0 ACGCGGCGACCAGGG----CAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCAC 295 consensus_1582#1 ACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCC-GCCAGGAGAGATGACCGCCGCNAC 127 ****** **** ** ** * ****** *** *********** ********* ** consensus_1582#0 GACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAG 355 consensus_1582#1 GACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAG 187 *********** ***************** *********** * ** ********* *** consensus_1582#0 GCGGGCATCCGGTTCAGGCGTCCTCATCAT-------------------------CCGGT 390 consensus_1582#1 GCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGT 247 ***** ************************ * *** consensus_1582#0 CGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGG 450 consensus_1582#1 CGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATG 307 ***************************************************** ** * * consensus_1582#0 AGTATGACACATGGGACC-ATATATTTTT-AATAAATAAGGTGCTGATTGGATTGCCCAA 508 consensus_1582#1 AGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGG-TTGCCACC 366 ********* ******* **** ***** ***************** *** ***** consensus_1582#0 AAAAAAAA 516 consensus_1582#1 GCNGNTNA 374 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||