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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 730 fasta sequence
[CTCCGACTGGAGCACGAGGACACTGACATCGACTGAAGGAGTAGAAAAATCTCGATCTCTCCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG-ACCGCCGCCC-CCGCGGCGAG-GCGCCGC-A-TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC-TTCGACGAGCC-G-CCGGCGT-A-CCCCTATC-TGC-ACATCCGT-AACAAGGAGT-TCCCATGGGGA-CCCGATGGCCT-A-TTTGAGAAC-AAGCACCATTAAGTACTGAACA-GCGCACCA-TCA-GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC-AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAAC]
[+] EMBL CF339700 [CTCCGACTGGAGCACGAGGACACTGACATCGACTGAAGGAGTAGAAAAATCTCGATCTCTCCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATC ]
[+] EMBL AK121608 [ TCTCTCCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATC ]
[+] EMBL C93524 [ CCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCG GAG GCG CGC ATTGTCCTCCTCCGCCCACGACGACGCCCATNAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGNCACCCCCAC TTCGACGAGCC G CCGG GTAA CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCA ]
[+] EMBL AU085771 [ CCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGAACCGCCGCCCNCCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAaaana ]
[+] EMBL C73869 [ AAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGNCGCCC CCGCGG GAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTNTCCAAGGGCCACCCCCACTTTCGACGAGCCNGCCCGGCGTGA CCCCTATCTTGC ACATNCGT AACAAGGAGT TNCCATGGGGA CCCGATGGCCT ATTTTGAGAACAAAGCACCATTAAGTACTTAACAGGCGCACCA TCANGAAagc ]
[+] EMBL OSC23411 [ GCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGC GCGAGNGCGCCGCAA TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGNCGGGATCGTCACCTGCACCCTGTTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G TCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGNTTAAGGAAAATTCTCTGGTTGTTCAAGTGATTCTNGTTTTC AGTGAAACCTATTTTTCTTGNAA AAAGGAATAAG NTG CAAA ]
[+] EMBL CA758728 [ GCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAAC]
[+] EMBL AK059576 [ GGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCC ]
[+] EMBL AU029934 [ ACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCNGGCGGCGCGCGCCAAGGCG ACCGCCGCCC CCGCGGCGAG GCGCCGC A TGTCCTCCTCCGCCCACNACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC NTCGACGAGCC G CCGGCGT A CACCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAANAAAGAAATAAGAATGACAAAACTCT ]
[+] EMBL BI795074 [ CGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGAGCC G CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCAC ACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAAAAAA ]
[+] EMBL BI795387 [ GGCGGCGTACAACCTCTCCAAGGGCCACCCCCAC TTCGACGA CC CCGGCGT A CCCCTATC TGC ACATCCGT AACAAGGAGT TCCCATGGGGA CCCGATGGCCT A TTTGAGAAC AAGCACCATTAAGTACTGAACA GCGCACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAAC AAGAAATAAGAATGAC AAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCAaaaa ]
[+] EMBL D42728 [ gaACGAACCGG ACGGCGT ACCCCCTANC TGCAACAACCGTNANCAGGCAGTCCCCCATGGGGACCCCGATGGCCTAA TTTGAGGAC AAGCCCCATTAAGTACTGAACA GCGCACCACTCA GAAGCCCAGTGAATGCTTAAGGAAAAATCTCTGGTTGTTCCAGTGAATCTTGTTTTCAAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCaa ]
[+] EMBL CA757080 [ ACCA TCA GAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCACCGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAAAAAAAAAA ]
[+] EMBL CA763882 [ GATTCTTGTTTTC AGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTAC ]
consensusID : consensus_15822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence
[GCCGCATGTCCTCCTCCGCCCACGACGACGCCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029935 [GCCGCATGTCCTCCTCCGCCCACGACGACGCCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCA AAAAAAAAAAA ]
[+] EMBL CF310088 [ CCTATCTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15822#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CCACCTTCCCCCATGGNATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGCCGCCCNCCGCGGCGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGNCGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGNGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCNGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGANAAAACTCTTGTGTTGATAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU071227 [CCACCTTCCCCCATGGNATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGCCGCCCNCCGCGGCGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGNCGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGNGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCNGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGANAAAACTCTTGTGTTGATAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15822#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[CAAGGCGNCCNCCGCCCCCGCGGCGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTAAAAAAAAAAAA]
[+] EMBL AU184109 [CAAGGCGNCCNCCGCCCCCGCGGCGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTAAAAAAAAAAAA]
consensusID : consensus_15822#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[GACGGCCAAGTGGGAGTAGATCNCCTACGCCGGGATCGTNACCTGCACCCTGTTGGCGGCGTACAACCTNTCCAAGGGCCACCCCCACTTCGACGAGCCNCCGGCGTACCCCTATCTGCACATCCGTAACAAGGNGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCNCCATTAAGTACTGAACAGCGCACCATCAGAAGCCCNGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGACAAAACTCTTGTGTTGATAATNAGGATTTAACTGTGTTGTTAGTTGTTNCCTGTTTTNTTCATTNNNNGCNGTGATCATATGCATGTGTTCTGTTTCNGNAANNAAAAAAAAAAAAAAAAANAA]
[+] EMBL AU071250 [GACGGCCAAGTGGGAGTAGATCNCCTACGCCGGGATCGTNACCTGCACCCTGTTGGCGGCGTACAACCTNTCCAAGGGCCACCCCCACTTCGACGAGCCNCCGGCGTACCCCTATCTGCACATCCGTAACAAGGNGTTCCCATGGGGACCCGATGGCCTATTTGAGAACAAGCNCCATTAAGTACTGAACAGCGCACCATCAGAAGCCCNGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGACAAAACTCTTGTGTTGATAATNAGGATTTAACTGTGTTGTTAGTTGTTNCCTGTTTTNTTCATTNNNNGCNGTGATCATATGCATGTGTTCTGTTTCNGNAANNAAAAAAAAAAAAAAAAANAA]
consensusID : consensus_15822#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[CCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGNCGCCCCCGCGGATGNGCGCGNANTGGTNCTCCTCCGCCCACGACGACGNCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGNCGCGTGACCCCTATCTTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATTGGCCTATTTGAGGAACAAGCACCATTAAGTACTTGAACAAGCGGAACCATCAGAAGGCCAATTGATTGTTTAAGGAAAATTTTCTGGTTGGTTCCAGTGAT]
[+] EMBL AU063097 [CCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGNCGCCCCCGCGGATGNGCGCGNANTGGTNCTCCTCCGCCCACGACGACGNCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGNCGCGTGACCCCTATCTTGCACATCCGTAACAAGGAGTTCCCATGGGGACCCGATTGGCCTATTTGAGGAACAAGCACCATTAAGTACTTGAACAAGCGGAACCATCAGAAGGCCAATTGATTGTTTAAGGAAAATTTTCTGGTTGGTTCCAGTGAT]
consensusID : consensus_15822#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence
[TCGATCTCTCCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGNCGCCCCCGNGNGATGNGCGCGNATGTCCTCCTCCGCCCACGACGACGNCCATGAGANGGCCAAGTGGGAGAAGATCACCTANGNCGGGATCGTCACCTGCACCNTGNTGGCGGCGTACAANCTCTCCAAGGGCCATCTNCANTTCGACGAGCCGCCGGCGTAANCCCTATGTGAANATNCGTAACAAGGAGTTCCATTGGGACCCGATGGCCTATTTGAGACAAGAACATTAAGTAT]
[+] EMBL AU065899 [TCGATCTCTCCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGNCGCCCCCGNGNGATGNGCGCGNATGTCCTCCTCCGCCCACGACGACGNCCATGAGANGGCCAAGTGGGAGAAGATCACCTANGNCGGGATCGTCACCTGCACCNTGNTGGCGGCGTACAANCTCTCCAAGGGCCATCTNCANTTCGACGAGCCGCCGGCGTAANCCCTATGTGAANATNCGTAACAAGGAGTTCCATTGGGACCCGATGGCCTATTTGAGACAAGAACATTAAGTAT]
consensusID : consensus_15822#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 343 fasta sequence
[TGACTGGACTGAAGGAGTAGAAATTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGCGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAAGTGCTCTTGCTCTTTAAAAAAAAAAA]
[+] EMBL CF330964 [TGACTGGACTGAAGGAGTAGAAATTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGCGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAA ]
[-] EMBL CF330965 [ AGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGCGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCAAAAAA ]
[+] EMBL CB096932 [ ATGACAAAACTCTTGTGTTGATAAT NGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCATTTCTGTGCTCTTGCTCTTTAAAAAAAAAAA]
consensusID : consensus_15822#8 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[TTTTTCTTTTCTTAACTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTATACGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCCTCACAA]
[-] EMBL CA757635 [TTTTTCTTTTCTTAACTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTATACGGGACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCCTCACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 ------------------------------------------------------------
consensus_15822#1 ------------------------------------------------------------
consensus_15822#3 ------------------------------------------------------------
consensus_15822#0 CTCCGACTGGAGCACGAGGACACTGACATCGACTGAAGGAGTAGAAAAATCTCGATCTCT 60
consensus_15822#5 ------------------------------------------------------------
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 ------------------------------------------------------------
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 ------------------------------------------------------------
consensus_15822#1 ------------------------------------------------------------
consensus_15822#3 ------------------------------------------------------------
consensus_15822#0 CCACCCGTTTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGG 120
consensus_15822#5 ------------------------------------------------------------
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 ------------------------------------------------------------
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 ------------------------------------------------------------
consensus_15822#1 ------------------------------------------------------------
consensus_15822#3 -------------------------------------CAAGGCGNCCNCCGCCCCCGCGG 23
consensus_15822#0 CGGCGAGATCCGGCCTCCGCTCGCTGGCGGCGCGCGCCAAGGCGACCGCCGCCCCCGCGG 180
consensus_15822#5 ------------------------------------------------------------
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 ------------------------------------------------------------
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 -------------------------------------------GACGGCCAAGTGGGAGT 17
consensus_15822#1 -----GCCGCATGTCCTCCTCCGCCCACGACGACGCCCCATGAGACGGCCAAGTGGGAGA 55
consensus_15822#3 CGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGA 83
consensus_15822#0 CGAGGCGCCGCATGTCCTCCTCCGCCCACGACGACGCCCATGAGACGGCCAAGTGGGAGA 240
consensus_15822#5 ------------------------------------------------------------
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 ------------------------------------------------------------
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 AGATCNCCTACGCCGGGATCGTNACCTGCACCCTGTTGGCGGCGTACAACCTNTCCAAGG 77
consensus_15822#1 AGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGG 115
consensus_15822#3 AGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGG 143
consensus_15822#0 AGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTCCAAGG 300
consensus_15822#5 ------------------------------------------------------------
consensus_15822#6 -------------------------------------------TCGATCTCTCCACCCGT 17
consensus_15822#2 ------------------------------------------------------------
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 -------------TTTTTCTTTTCTTAACTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT 47
consensus_15822#4 GCCACCCCCACTTCGACGAGCCNCCGGCGTACCCCTATCTGCACATCCGTAACAAGGNGT 137
consensus_15822#1 GCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGT 175
consensus_15822#3 GCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGT 203
consensus_15822#0 GCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGT 360
consensus_15822#5 ----CCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGA 56
consensus_15822#6 TTCCCCCAAAACCAGCGGCGCCACCACCCACCTTCCCCCATGGCATCGGCGGCGGCGAGA 77
consensus_15822#2 ---------------------------CCACCTTCCCCCATGGNATCGGCGGCGGCGAGA 33
consensus_15822#7 ---TGACTGGACTGAAGGAGTAGAAATTGAGAACAAGCACCATTAAGTACTGAACAGCGC 57
consensus_15822#8 TTTATACGGGACCCGATGGCCT--ATTTGAGAACAAGCACCATTAAGTACTGAACAGCGC 105
consensus_15822#4 TCCCATGGGGACCCGATGGCCT--ATTTGAGAACAAGCNCCATTAAGTACTGAACAGCGC 195
consensus_15822#1 TCCCATGGGGACCCGATGGCCT--ATTTGAGAACAAGCACCATTAAGTACTGAACAGCGC 233
consensus_15822#3 TCCCATGGGGACCCGATGGCCT--ATTTGAGAACAAGCACCATTAAGTACTGAACAGCGC 261
consensus_15822#0 TCCCATGGGGACCCGATGGCCT--ATTTGAGAACAAGCACCATTAAGTACTGAACAGCGC 418
consensus_15822#5 TCCGGCCTCCGCTCGCTGGCGGC-GCGCGCCAAGGCG-ACCGNCGCCCCC-GCGG-ATGN 112
consensus_15822#6 TCCGGCCTCCGCTCGCTGGCGGC-GCGCGCCAAGGCG-ACCGNCGCCCCC-GNGNGATGN 134
consensus_15822#2 TCCGGCCTCCGCTCGCTGGCGGC-GCGCGCCAAGGCG-ACCGCCGCCCNCCGCGGCGAGG 91
* * * ** * ** * * *
consensus_15822#7 ACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 116
consensus_15822#8 ACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 164
consensus_15822#4 ACCATCAGAAGCCCNGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 254
consensus_15822#1 ACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 292
consensus_15822#3 ACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 320
consensus_15822#0 ACCATCAGAAGCCCAGTGAATGCTTAAGAAAAATTCTCTG-GTTGTTCCAGTGATTCTTG 477
consensus_15822#5 GCGCGNANTGGTNCTCCTC-CGCCCACGACGACGNCCATGAGACGGCCAAGTGGGAGAAG 171
consensus_15822#6 GCGCGNAT--GTCCTCCTC-CGCCCACGACGACGNCCATGAGANGGCCAAGTGGGAGAAG 191
consensus_15822#2 CGCCGCAT--GTCCTCCTC-CGCCCACGACGACGCCCATGAGNCGGCCAAGTGGGAGAAG 148
* * * ** * ** * * ** * * * **** *
consensus_15822#7 TTTTCAGCGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTT 176
consensus_15822#8 TTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTT 224
consensus_15822#4 TTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGACAAAACTCTTGTGTT 314
consensus_15822#1 TTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTT 352
consensus_15822#3 TTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTT 380
consensus_15822#0 TTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACTCTTGTGTT 537
consensus_15822#5 A--TCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTC-CAAG 228
consensus_15822#6 A--TCACCTANGNCGGGATCGTCACCTGCACCNTGNTGGCGGCGTACAANCTCTC-CAAG 248
consensus_15822#2 A--TCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAACCTCTC-CAAG 205
*** * * * * ** * * ** ****
consensus_15822#7 GATAATCAGGATTTAACTGTGTTGTTAGT-TGTTACCTGTTTTCTTCATTCACAGCAGTG 235
consensus_15822#8 GATAATCAGGATTTAACTGTGTTGTTAGT-TGTTACCTGTTTTCTTCATTCACAGCAGTG 283
consensus_15822#4 GATAATNAGGATTTAACTGTGTTGTTAGT-TGTTNCCTGTTTTNTTCATTNNNNGCNGTG 373
consensus_15822#1 GATAATCAGGATTTAACTGTGTTGTTAGT-TGTTACCTGTTTTCTTCAAAAAAAAAAAAA 411
consensus_15822#3 GATAATCAGGATTTAACTGTGTTGTTAGT-TGTTAAAAAAAAAAAA-------------- 425
consensus_15822#0 GATAATCAGGATTTAACTGTGTTGTTAGT-TGTTACCTGTTTTCTTCATTCACAGCAGTG 596
consensus_15822#5 GGCCACCCCCACTTCGACGAGCCGNCG-CGTGACCCCTATCTTGCACATCCGTAACAAGG 287
consensus_15822#6 GGCCATCTNCANTTCGACGAGCCGCCGGCGTAANCCCTATGT-GAANATNCGTAACAAGG 307
consensus_15822#2 GGCCACCCCCACTTCGACGAGCCGCCGGCGT-ACCCCTATCT-GCACATCCGTAACAAGG 263
* * * ** * * * *
consensus_15822#7 ATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATT 295
consensus_15822#8 ATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCCTCACAA-------------- 329
consensus_15822#4 ATCATATGCATGTGTTCTGTTTCNGNAANNAAAAAAAAAAAAAAAAANAA---------- 423
consensus_15822#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 471
consensus_15822#3 ------------------------------------------------------------
consensus_15822#0 ATCATATGCATGTGTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATT 656
consensus_15822#5 AGTTCCCAT-GGGGACCCGATTGGCCTATTTGAGGAACAAGCACCATTAAGTACTTGAAC 346
consensus_15822#6 AGTTCC-AT-TGGGACCCGAT-GGCCTATTTGAG--ACAAGAAC-ATTAAGTAT------ 355
consensus_15822#2 NGTTCCCAT-GGGGACCCGAT-GGCCTATTTGAG-AACAAGCACCATTAAGTACTGAACA 320
consensus_15822#7 ATAATCTTCCTACGCCAAAAAAGTGCTCTTGCTCTTTAAAAAAAAAAA------------ 343
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 ------------------------------------------------------------
consensus_15822#1 AAAAAAAAAA-------------------------------------------------- 481
consensus_15822#3 ------------------------------------------------------------
consensus_15822#0 ATAATCTTCCTACGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 716
consensus_15822#5 AAGCGGAACCATCAGAAGGCCAATTGATTGTTTAAGGAAAATTTTCTGGTTGGTTCCAGT 406
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 GCGCACCATCA----GAAGCCCNGTGAATGCTTAAGAAAAATTCTCTGGTTGTTCCAGTG 376
consensus_15822#7 ------------------------------------------------------------
consensus_15822#8 ------------------------------------------------------------
consensus_15822#4 ------------------------------------------------------------
consensus_15822#1 ------------------------------------------------------------
consensus_15822#3 ------------------------------------------------------------
consensus_15822#0 AAAAACCTCGAAAC---------------------------------------------- 730
consensus_15822#5 GAT--------------------------------------------------------- 409
consensus_15822#6 ------------------------------------------------------------
consensus_15822#2 ATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGNATGANAAAACTC 436
consensus_15822#7 -----------------------------
consensus_15822#8 -----------------------------
consensus_15822#4 -----------------------------
consensus_15822#1 -----------------------------
consensus_15822#3 -----------------------------
consensus_15822#0 -----------------------------
consensus_15822#5 -----------------------------
consensus_15822#6 -----------------------------
consensus_15822#2 TTGTGTTGATAAAAAAAAAAAAAAAAAAA 465
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||