Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15844 cluster # 15844       Sequences # 25       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15844#0 length = 913 sequences # 9  
consensus_15844#1 length = 827 sequences # 16  

consensusID : consensus_15844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 913
fasta sequence
                              [GCTGAAGCTGAAGAGCTGAACGCGGTGAGGCGGTCGTAGGCCTTCTTCCCCTCTCCGTCTCGTGTCCCACGCACGCACACC-TTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGCAGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGG--TGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG--ATATATAGAATAATTACATGTGTATCTTGCTTATTGCCCAAAATAGAGGCATCAAATGCAGTCAAAACTTTGGTTTAAAAAAAA]

[+] EMBL CF332733             [GCTGAAGCTGAAGAGCTGAACGCGGTGAGGCGGTCGTAGGCCTTCTTCCCCTCTCCGTCTCGTGTCCCACGCACGCACACC TTTCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGCAGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGA                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OS1453A              [                                              TCCCCTCTCCGTCTCGTGTCCCACGCACGCACACCTTTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGCAGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTNCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGNGGGGGCTGNGGGCACGTTCTATGNCGGAGAGANATACCAATTGCAGGTGGACTTNCCTGAGCATTA CCCATGGAGG TTCCCAGGTGATATTTCTTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK103809             [                                                                                  TTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGCAGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGG  TGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG  ATATATAGAATAATTACATGTGTATCTTG                                                       ]
[+] EMBL OSS1340A             [                                                                                                               CATCCCTAGCAGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU097030             [                                                                                                                                                                                                                                                   TCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGG  TGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG  ATATATAGAATAATTACATGTGTATCTTGCTTATTGCCCAAAATAGAGGCATCAAATGCAGTCAAAACTTTGGTTTAAAAAAAA]
[+] EMBL OSC4261              [                                                                                                                                                                                                                                                             AGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGTNCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGG ACTGCCGCAATGGGAGGTCGCCG AGGAG CCAGGGTTGGTGGTTTCATGATGACAAAGTGTGATTGGTTCC ACTTCCGGTTGGCTTNTCCTAAG AACCC TTTACCCG CAACCTACC TTA ATGGggg                                                                                                                                                                                                                      ]
[+] EMBL AU165784             [                                                                                                                                                                                                                                                              GCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGG  TGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG  ATATATAGAATAATTACATGTGTAaaaaa                                                       ]
[-] EMBL CF332734             [                                                                                                                                                                                                                                                                                                                                                                                   GGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGG  TGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGCGGTCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG  ATATATAGAATAATTACATGTGTATCTTGCTTATTGCCCAAAATAGAGGCATCAAATGCAGTCAAAACTTTGGTTTAAAAAA  ]
[+] EMBL AA750942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTAAGTGATCTATTTGACCG AAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGGATATATATAGAATAATTA                                                                    ]


>consensus_15844#0 GCTGAAGCTGAAGAGCTGAACGCGGTGAGGCGGTCGTAGGCCTTCTTCCCCTCTCCGTCT CGTGTCCCACGCACGCACACCTTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGC AGCCGCCCCGCACCCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGC TGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTC CCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGG GGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGC ATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACA TTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGA CCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAAC GTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGA CCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCC TCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTT AGGCATATTTTTAAGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAAT GAATGTGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGGATATATAGAAT AATTACATGTGTATCTTGCTTATTGCCCAAAATAGAGGCATCAAATGCAGTCAAAACTTT GGTTTAAAAAAAA



consensusID : consensus_15844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 827
fasta sequence
                              [CCTCCCCTCTTCTTCTCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC-TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT-CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC-TACGCCGGCG-AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT-GGAGGCGCCTCAGG-TCA-TTTTTC-TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC-GGGCACATC-TGTTTAGATATACTGTATGA-TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA-TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA-TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGAATAAGCAAGTGTACCATGCTTGATTCTNCTGAAAAAA]

[+] EMBL AK071648             [CCTCCCCTCTTCTTCTCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATAACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGC AAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGAATAAGCAAGTGTACCATGC                  ]
[+] EMBL C98983               [               TCCTTCGACTTTNTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCGAAGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTT TNAACCCGGCGCCGATGCATNCACACATTTACAGCAACGGGGCACATC TNTTTAGATATACTG                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU078220             [               TCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU064453             [               TCCTTCGACTTTGTTCGACTCCNCTNCTTCCCGGNAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATNGCTTNCAATCGGCTGCAGAAGGAGCNCGCCGAGTGGCAGGTCAGCNCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTTATCGAGGTNACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGAAATANCAGCTGCAGGTCGACTT CCTGAGCATTATCCCAT GGAGGNGCCTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU064988             [               TCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGTTCTTACGGCGGCG AGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU065068             [               TCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGNTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATNCACACATTTACAGCAAC GGGCACATC TTTTTAGATATACTGTATGA TTCTTTGTCAACTGCAATGACTTTCAGTTTCGNCTTCATCAGCAT                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU064193             [               TCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGNAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGNCTTTCCTGAGCATTATCCCATNGGAGGCGCCTCAGG NCATTTTTTCTTAAACCNGGCGNCGATGCATCCACACATTTACAGCAACGGGGCACATCTTGTTTAGGTATACTGTATG                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU064919             [               TCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGNTC TACGNCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTN TAAACCC GCGCCGATGNATCCACACANTTNCAAGAAC GGGCAAAT  TTTTTAGGTATACTGTATGATTTTTTGGTAAC                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSC28541             [                                                             GAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGNCATGACGAGCTCCTCATCTCC TTNCCGAAAGGCGCTGAGCAAGATCGNTTGCAATCGGCTGCAGAAGGNGCTCGNCGAGTGGCAGNTCAGCCCTCCCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTTGACTTCCCTGAGCATTATCCCAT GGAGGCGNCTCAGGTTCA TT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU078221             [                                                                                               CAACGCCATGACGAGCTCCTCATCTCCTTTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCT CCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGA                                     ]
[+] EMBL AU094911             [                                                                                               CAACGCCATGACGAGCTCCTCATCTCC TTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCCCT CCTCCGGGTT CAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGA                                     ]
[+] EMBL AU094326             [                                                                                                                                                                                         AGGTCAGCCCTCCTTCCGGGTN CAAG ACAGGGTCTCCGATACCNTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGNCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGA                                     ]
[+] EMBL AU094220             [                                                                                                                                                                                                  ccttCTTCGGGTTCCAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCACCGGAGCGGCGGGCACGCTN TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCAT GGAGGCGCCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGA                                     ]
[+] EMBL OSEN44835            [                                                                                                                                                                                                                                                  GTAATCGAGGTCACCGGAGCGGCGGGCACGCTC TACGCCGGCG AGACATACCAGCTGCAGGTCGACTTTCCTGAGCATTATCCCAT GGAGGCGGCTCAGG TCA TTTTTC TCAACCCGGCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTTGCCGCAATGGGAGGTCGCCCGATGAGACAAGATGGTGGTTCCATTGTTGACAAAGTGTAAGGGGACTTGGTTttgaac                                                                                                                                                                                                                             ]
[+] EMBL AU183034             [                                                                                                                                                                                                                                                                                                                                                                             GCGCCGATGCATCCACACATTTACAGCAAC GGGCACATC TGTTTAGATATACTGTATGA TTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGA                                     ]
[+] EMBL AU069908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCAACGCCCTCAAGACAATGACCGCTATGTTAGGAA TTGCCGCAATGGGAGGTCGCCGAA GAGACANGATGGTGGTTCCA TGATGACAAAGTGTAAGAGGAACTAGTTGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATGATTATACAGAATAAGCAAGTGTACCATGCTTGATTCTNCTGAAAAAA]


>consensus_15844#1 CCTCCCCTCTTCTTCTCCTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGG AGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCT CCTTCCCGAAAGGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAG TGGCAGGTCAGCCCTCCCTCCGGGTTCAAGTACAGGGTCTCCGATAACCTCCAAAGGTGG GTAATCGAGGTCACCGGAGCGGCGGGCACGCTCTACGCCGGCGAGACATACCAGCTGCAG GTCGACTTCCCTGAGCATTATCCCATGGAGGCGCCTCAGGTCATTTTTCTCAACCCGGCG CCGATGCATCCACACATTTACAGCAACGGGCACATCTGTTTAGATATACTGTATGATTCT TGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGT TCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGG AGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGATGACAAAGTGTAAGAGGAACTAGTT GGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGA TGAATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTT GGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATATTACCATAAATG ATTATACAGAATAAGCAAGTGTACCATGCTTGATTCTNCTGAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15844#0      GCTGAAGCTGAAGAGCTGAACGCGGTGAGGCGGTCGTAGGCCTTCTTCCCCTCTCCGTCT 60
consensus_15844#1      --------------------------------------------CCTCCCCTCTTCTTCT 16
                                                                   * ******** * ***

consensus_15844#0      CGTGTCCCACGCACGCACACCTTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGC 120
consensus_15844#1      C---CTTCGACTTTGTTCGACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGA 73
                       *      *      *  *  ** *** ** ** *  *           *        ** 

consensus_15844#0      AG--CCGCCCCGCACCCGCGCCCG-CACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGG 177
consensus_15844#1      GGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGG 133
                        *   *  **  ** *  *   *  * **************** ** ******** ****

consensus_15844#0      TGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACC 237
consensus_15844#1      CGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGCAGGTCAGCC 193
                        *************** ***** ******************** ************* **

consensus_15844#0      CTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCG 297
consensus_15844#1      CTCCCTCCGGGTTCAAGTACAGGGTCTCCGATAACCTCCAAAGGTGGGTAATCGAGGTCA 253
                       ********** ****** *** **** **** ** ***** ******** ********* 

consensus_15844#0      CGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTG 357
consensus_15844#1      CCGGAGCGGCGGGCACGCTCTACGCCGGCGAGACATACCAGCTGCAGGTCGACTTCCCTG 313
                       * ** ** ************** ***** ***********  ******* **********

consensus_15844#0      AGCATTACCCCATGGAGGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGC 417
consensus_15844#1      AGCATTATCCCATGGAGGCGCCTCAGGTCATTTTTCTCAACCCGGCGCCGATGCATCCAC 373
                       ******* *********** ** ******** *****  * ** ***** ******** *

consensus_15844#0      ACATTTACAGCAATGGGCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGA 477
consensus_15844#1      ACATTTACAGCAACGGGCACATCTGTTTAGATATACTGTATGATTCTTGGTCACCTGCAA 433
                       ************* ***** *************** ******* ** ******** ** *

consensus_15844#0      TGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGC 537
consensus_15844#1      TGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGC 493
                       **** ** ***** ** ** ***** ** ***** *********** *************

consensus_15844#0      AACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGG 597
consensus_15844#1      AACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGTCGCCGAAGG 553
                       **** ***   ******** ******** ***** *************************

consensus_15844#0      AGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTC 657
consensus_15844#1      AGACCAGATGGTGGTTCCATGATGACAAAGTGTAAGAGGAACTAGTTGGCACTT--TTGC 611
                       ******* ******** **************** *  **  * *  *  *  **   * *

consensus_15844#0      TCCTCAGCAACCCTTTTACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGA 717
consensus_15844#1      CATTCAGTAATCGTAATACCTTGAAATCT---CTTGCAAGGGG-----AAAATGAGATGA 663
                          **** ** * *  ****    *  **    ** ** ** *      *   *******

consensus_15844#0      TT-TAGGCATATTTTTAAGCGA---TCTATTTGACCGC-AAATTAACATGCCTTTGTGGT 772
consensus_15844#1      ATGTAGGCTTACTGTTAAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGT 723
                        * ***** ** * ******     ****** **** * **  * *  ***     ****

consensus_15844#0      TTGTAAATGAATG---TGAACCTGTATCGAATCCTAGACTTATTAATTACTATACCTTGG 829
consensus_15844#1      TTGTACATGAGCTGCCTGCACACATGTCAAGTCATGAATATAATA-TTACCATAAAT-GA 781
                       ***** ****      ** **   * ** * ** *  *  ** ** **** ***  * * 

consensus_15844#0      ATATATAGAATAATTACATGTGTATCTTGCTT-ATTGCCCAAAATAGAGGCATCAAATGC 888
consensus_15844#1      TTATACAGAATAA--GCAAGTGTACCATGCTTGATTCTNCTGAAAAAA------------ 827
                        **** *******   ** ***** * ***** ***   *  ** * *            

consensus_15844#0      AGTCAAAACTTTGGTTTAAAAAAAA 913
consensus_15844#1      -------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)