These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 999 fasta sequence [AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCAACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATGTTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCACTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTTTTCAATTTGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCTTAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTTGTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTCATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGTTTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTATGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTGTGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTTTTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTTCTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTCCCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTTTTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT] [+] EMBL BE040977 [AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCAACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATGTTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCACTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTTTTCAATTTGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCTTAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTTGTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTCATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGTTTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTATGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTGTGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTTTTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTTCTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTCCCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTTTTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT] consensusID : consensus_1587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCAACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGCGATGGAGGCGGACCTGACGAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCACCAGGCTGCTCGGCGGCATCTTCCGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTAATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATCTTGTCTATGGAAACTGGATGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATCGCCTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTACCTTGTTCTGAACCTAAGTTAATGTCAATGATC] [+] EMBL AK119672 [GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCAACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGCGATGGAGGCGGACCTGACGAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCACCAGGCTGCTCGGCGGCATCTTCCGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTAATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATCTTGTCTATGGAAACTGGATGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATCGCCTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTACCTTGTTCTGAACCTAAGTTAATGTCAATGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1587#0 AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCG 60 consensus_1587#1 ----------------GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCG 44 ****************************** ************* consensus_1587#0 TGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCA 120 consensus_1587#1 TGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCA 104 ******************************************************* **** consensus_1587#0 ACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGC 180 consensus_1587#1 ACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGC 164 **************************** *********** ******************* consensus_1587#0 TGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATG 240 consensus_1587#1 TGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCG-ACGACGAACAGCAACGGGTCGTTCGCG 223 ************************ ** *** ** ** ***** ***** * ** * consensus_1587#0 TTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCA 300 consensus_1587#1 ATGGAGGCGGACCTGACGAGCGGGCTGGC------GATGC-TCATCGGCGGGTGCAAGCT 276 *** ** **** * ***** * * ** * *** ** * * * consensus_1587#0 CTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTT 360 consensus_1587#1 GGTGGTGGACACGCCG--CTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTC 334 ** * * * ** ** * * * ** * * * * * consensus_1587#0 TTCAATT-TGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCT 419 consensus_1587#1 GTCTCCTACCTGCAGGGCCCGCTCACCAG-----GCTGCTCGGCGGCATCTTCCGCCTCT 389 ** * *** * * ** * * * * *** * ** * *** consensus_1587#0 TAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTT 479 consensus_1587#1 T---CCCCGCCGGCTTCTCCTTCCACGCCCACTAATATAC----AACATCTCATTATGCA 442 * * * * ** * ** * * *** * ** * ** * consensus_1587#0 GTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTC 539 consensus_1587#1 AATCTCGATTTGGTCCTATCTTGTCTATGGAAACT---------------GGATGTACCG 487 * * **** * * * ***** * ** * consensus_1587#0 ATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGT 599 consensus_1587#1 TAATTTCTACTAGTAGAATACT---AGTAGTACGTAGTACTGATCTC--ATCTGTATCGC 542 * * ** * ** * * * * * ** *** * * * * * *** consensus_1587#0 TTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTA 659 consensus_1587#1 CTGTACGCTGAAGCTCA--TTGGCCTGCTTAGAGCAGGAGTTGCGAATGTT---TTCTTG 597 * * ** ** * * *** * * ** ** *** * *** consensus_1587#0 TGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTG 719 consensus_1587#1 GTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTAC---CTTGTTCTGAACCTAAGTT 654 ** * *** ** * **** ** * ** * * * ** consensus_1587#0 TGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTT 779 consensus_1587#1 AATGTCAATGATC----------------------------------------------- 667 ** *** * consensus_1587#0 TTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTT 839 consensus_1587#1 ------------------------------------------------------------ consensus_1587#0 CTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTC 899 consensus_1587#1 ------------------------------------------------------------ consensus_1587#0 CCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTT 959 consensus_1587#1 ------------------------------------------------------------ consensus_1587#0 TTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT 999 consensus_1587#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||