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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 715 fasta sequence
[CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC-TCCGGCGACGACGACGTCCATCCTGGCACTGGCC-TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG--T--GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT-GGT-GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT]
[+] EMBL CF196494 [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGANNAAAAACGCGGCGGCGATGCCAGC TCCGGCGANNNNNNCGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTNTNNNCTTTn ]
[+] EMBL CF196650 [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGNCAGCAA ]
[+] EMBL AK063209 [ CTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT]
[+] EMBL CF332944 [ TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGGGN TG GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAC ]
[+] EMBL CF332496 [ TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGT AGTGGNTT GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACCCTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTT ]
[+] EMBL C91888 [ TGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCT ]
[+] EMBL AU032934 [ CATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCG CANAAATGTCAACAGTGGACCGGCCGACACGCGGCANGGGAAAAACGCGGCGGCATTGCCAGCTTCCGGCGACGACGACGTCCATNCTGGCACTTGCCTTTCTTCTTCGCCATTGCTGTCTCAGTTTTCAGtt ]
[-] EMBL CF298953 [ CTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCCCAAaaaaa ]
[+] EMBL CF324845 [ GACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG TTGGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCAaa ]
[+] EMBL AU094717 [ GGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTAaaaaaaa ]
[+] EMBL AU161503 [ caccCCGGCGACGACGACGTCCATCCTGGCACTGGCC TCNTCCNTCGCCATNGCTGTCNCAG TTTCAGCTNCTGAANCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAaca ]
consensusID : consensus_15873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC]
[+] EMBL CF298954 [GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC]
consensusID : consensus_15873#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence
[CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG]
[+] EMBL CA757461 [CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG]
[+] EMBL BU673042 [ agcttggCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAG ]
consensusID : consensus_15873#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 620 fasta sequence
[TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT-GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC]
[+] EMBL AK062738 [TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTG ]
[+] EMBL AU165987 [ TAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ]
[+] EMBL AU064710 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAAGGg ]
[+] EMBL AU064712 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAGGGTGGCAGCGC ]
[+] EMBL AU163683 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ]
[+] EMBL AU064686 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGNTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ]
[+] EMBL C93679 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTNCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGTTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTNAGGCCTCATCTCCATGTAGAAGANTTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGNTGG ]
[+] EMBL AU094250 [ ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ]
[+] EMBL AU064088 [ ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGATGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCG ]
[-] EMBL BU673866 [ CGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGTGATGATCA ]
[+] EMBL C98985 [ AAAAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCANCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCANCTTTCAGCTTCTGANCAGATGTGTCGGTGGTGTTCTTGCAAAAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAANTCGTGTGCTGTGTGTCCAGTTCGTCANAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC]
consensusID : consensus_15873#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG]
[+] EMBL C91609 [GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15873#0 CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACT 60
consensus_15873#4 ------------------------------------------------------------
consensus_15873#1 -------------------------------------------------------GAGTA 5
consensus_15873#3 ------------------------------------------------------------
consensus_15873#2 --------------------------------------------------CCGCCGGCGC 10
consensus_15873#0 CCACATAATAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 119
consensus_15873#4 ------GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 54
consensus_15873#1 GAAATTTTTAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 64
consensus_15873#3 ----------TCTTGCTGGTGATTAG-TCCATCTCAAGATGATGAAAAGCTTTCTTGCTC 49
consensus_15873#2 AGGCGGCGGAGGAGTGTCCGAGTCGCGGCCG-CGCAACGGGAAGAACGGCGCGGCGAC-- 67
* ** * *** ** *** ** *
consensus_15873#0 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 173
consensus_15873#4 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 108
consensus_15873#1 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 118
consensus_15873#3 TCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACA 109
consensus_15873#2 GCTGCCGGCTCCGGCGACGACGTCCATCCT--GGCAC-TGGCTATCACCTG--------- 115
** ** **** * * * *** ***** *** * ***
consensus_15873#0 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 233
consensus_15873#4 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 168
consensus_15873#1 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATA 178
consensus_15873#3 GAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCAT- 168
consensus_15873#2 --TGCCGCTGTTCT-------CTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTT 166
*** * * * ******* ** * ** * * * *
consensus_15873#0 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 290
consensus_15873#4 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 225
consensus_15873#1 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 235
consensus_15873#3 --------GGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 217
consensus_15873#2 C--TTGCAAGAAAGGTACTAGTAGAG-TGTGTGTGTGTGTTTTCTTTTGAGATGATAGTA 223
* *** ** * *** * ** ** * ****
consensus_15873#0 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 349
consensus_15873#4 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTG 285
consensus_15873#1 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 294
consensus_15873#3 TGAAGGTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCC---- 273
consensus_15873#2 TGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTT 283
*** * * * * *** * * * * ** * * *
consensus_15873#0 ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 408
consensus_15873#4 ACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAG 345
consensus_15873#1 ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 353
consensus_15873#3 GCGGCCGCCGGCGCA-GGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAA 332
consensus_15873#2 TNTGTGGGCGCTTCG--CTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGT 341
* * * * ** * * * *
consensus_15873#0 GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 468
consensus_15873#4 GG---------------------------------------------------------- 347
consensus_15873#1 GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 413
consensus_15873#3 CGG------CGCGGCGACGCTGCCGGCTCCGGCGACGAC---GTCCATCCTGGCACTGGC 383
consensus_15873#2 TGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTC-TTTCTTGCGCGCGGGGGTC 400
consensus_15873#0 CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 528
consensus_15873#4 ------------------------------------------------------------
consensus_15873#1 CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 473
consensus_15873#3 TATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGT-CGGTGGTGT 442
consensus_15873#2 CGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTN--CGGCGGTGT 458
consensus_15873#0 TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 588
consensus_15873#4 ------------------------------------------------------------
consensus_15873#1 TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 533
consensus_15873#3 TCTTGCAAGAAAGGTACTAGTA-GAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTAT 501
consensus_15873#2 NTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCG-CGGNGGGTNGCCTCNC 517
consensus_15873#0 TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 648
consensus_15873#4 ------------------------------------------------------------
consensus_15873#1 TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 593
consensus_15873#3 GATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTC 561
consensus_15873#2 CTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTG 577
consensus_15873#0 TTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCC 708
consensus_15873#4 ------------------------------------------------------------
consensus_15873#1 TTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC---------- 643
consensus_15873#3 AGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC- 620
consensus_15873#2 CTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTG 637
consensus_15873#0 AGGTTCT 715
consensus_15873#4 -------
consensus_15873#1 -------
consensus_15873#3 -------
consensus_15873#2 GTGG--- 641
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||