These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1337 fasta sequence [ACACAACAG-CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT-GGACTCTACAACATC-GTCATCATCTCCTTCTACAGCCTCTT-CGGCCATGGCCGC-TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT-CCG-CCG-CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG-CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAGGCGCTGGAAACCTA-CCTTTTCC-GGCGAAT-CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG-CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG-AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGCT-ACTAACCTGACGGGGTTGAACCTGTATAAAAAGTAAA] [+] EMBL AK073267 [ACACAACAG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGCCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAGGCGCTGGAAACCTA CCTTTTCC GGCGAAT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGCT ACTAACC ] [+] EMBL CF313943 [ACACAACAG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAA ] [+] EMBL CF327369 [ACACAACAG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAATCCCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCGCCCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTTACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCACCGGGT ] [+] EMBL AB027425 [gggCAACAG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAGGCGCTGGAAACCTA CCTTTTCC GGCGAAT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATT ] [+] EMBL CF329178 [ CAG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCTGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACCCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCGCCCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGAC ] [+] EMBL C26700 [ gagCAGNCACTCCACACACAATTACACAACANTGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTNTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGNTCCAGCCGGAAGGAGACGGAACGTGGTCGTTTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGTGGGACTTTACAACATCGGTNATCATCTCCTTCTACAGCtttt ] [+] EMBL CF314957 [ AG CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCCACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCGNNCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCGCCCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCACCGAGCGGATCAACT ] [+] EMBL OSC105301 [ CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGNCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGNCGGCGNCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTTTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTNTGCGACAGT GGAC ] [+] EMBL AU075988 [ CACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTNCGG CACGACCTCCG CACATCGGCGCCGACAT ACCCACTGGCATTTCAAGGCCGTCTACGTNCTTCTCT CATCGGCGGCGGCGATGGAAAAGACTACTTCCTA CTT CTTCAAAT CCG GCG GCGACGTCGgc ] [+] EMBL C96800 [ TCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGGCTCTT CGGCCATGGGCGCTTACTGGGACGACCTCTTCGGGCACGANCTTCGGCACATCGGNGGCGACATna ] [+] EMBL D55709 [ AATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAGGCGCTGGAAACCTA CCTTTTCC GGCGAAT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGT ] [+] EMBL OSC103211 [ TCCTCGCCNCCATCCTTNTTCTCTCCNTCTTGGCGACGGCCAACCTCGCCGANGCCATCGATCCANCCGGANGGNGACGGAACGAGGTCGTNTTCTAGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTNCGACANT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTTACGGCCATGGCCGC TACTGGGACGACCTCT ] [+] EMBL CF331276 [ acggcatgaACAGT GGACTCTACAACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACC ] [+] EMBL CF327221 [ AACATC GTCATCATCTCCTTCTACAGCCTCTT CGGCCATGGCCGC TACTGGGACGACCTCTCCGGCCACGACCTCCGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCCATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAAT CCG CCG CCGACGTCGCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCG CCCGGGAGTCTACCACCCATTCGGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCACTACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGGTTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAGTCGCTGGAAACCTA CCTTTTCC GGCGAAT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTAT ] [-] EMBL CF313942 [ TGAAGAAGGCGCTGGAAACCTACCCTTTTCC GGCGAAT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAAGCTAGTGTTTTTTTTTaaaaaa ] [+] EMBL AU082866 [ TTTTCCGGGCGAATCCCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCGCCCGGCGTCATGGCGCAGTGGAACAGGTGGTCGNCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATA CTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTAaaaaaa ] [-] EMBL CF314958 [ AT CCACGTCAGGTTCTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTCG CCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCAaaaaa ] [-] EMBL CF331277 [ GTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACCATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGCT ACTAACCTGACGGGGTTGAACCTGTATAAAAA ] [+] EMBL AU091503 [ CGGCGANTTACCCTTATAATGGGAAGATTTACTTGGGGNTCGCGGCGGCGAATTTGACGGGGAAGAATGACATGGTCNCCGTCGGTGAGNTCTACCGGAAGNTGTTGCCGGCGGTGCAGAAGACGGATA CTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTAaaaa ] [+] EMBL AU092050 [ TGTGCCTCCATCATCAGTCCAATCCGTGCGTGNATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCG AAAGCTAGTG TTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGCT ACTAACC ] [-] EMBL CF327222 [ TTTATGTGCACAACTCGGTGTTCCGCCATACATGCATGTGTGCTCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTCGAGTATTATTACCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGTTGGGTAACCTCACGGGGTT CCCTGTAAAAAAAGTAAA] consensusID : consensus_15947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [CGGCGAATCCACGTCAGGTTCTACGATGATCCGAGGTGTTCATNCACCCATGCCGGGCTCGCCGGGCGTCATGGCNCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGNCGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGCCGGTGCAGAAGNCGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAGCTAGTG-TTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTAAAAAAAAAAAAA] [+] EMBL AU075987 [CGGCGAATCCACGTCAGGTTCTACGATGATCCGAGGTGTTCATNCACCCATGCCGGGCTCGCCGGGCGTCATGGCNCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGNCGCGAATTTGACGGGGAAGAATGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGCCGGTGCAGAAGNCGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGTCCAATCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAGCTAGTG TTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTATTATTATCTGCGCAATTTGGATACCCTAAAAAAAAAAAAA] [+] EMBL C96801 [ TATGACTCCATCACTCACTACGGACGGTATGTCAGTNCCTGGGCTTAATTATAAGATTCAGAGATCAACCAACGATAATCTCTCTATATATACGTGTGCCTCCATCATCAGNCCAANCCGTGCGTGCATATAGCTCAATCACTATCACAGTAATCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAGCTAGTGTTTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTAaaa ] consensusID : consensus_15947#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [AACCTACCTTCCGGGGAATCCACGTCAGGTTTTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTTGCCGGGGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAAAATGACATGGTCCCCGTCGGTGAGCTTTACCGGAAACTGCTGCCGGCGGTGCAAAAAACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCCCTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCCACGATAATTTTTTTATATAAACGTGTGCCTCCATCATCAGTCCAATCCGTGGGTGCATATAGGTCAATCCCTATCCCAGTAATCATTACTTAGGACATGTTGTTTTGTAATTTTTGCTAGCGAAAGGTAGTGTTTTTTTTTTATGTGCCAAAAGAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF327368 [AACCTACCTTCCGGGGAATCCACGTCAGGTTTTACGATGATCCGAGGTGTTCATACAACCATGCCGGGCTTGCCGGGGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGTTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAAAATGACATGGTCCCCGTCGGTGAGCTTTACCGGAAACTGCTGCCGGCGGTGCAAAAAACGGATACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCCCTACGGACGGTATGTCAGTGCCTGGGCTTAATTATAAGATTCAGAGATCAACCCACGATAATTTTTTTATATAAACGTGTGCCTCCATCATCAGTCCAATCCGTGGGTGCATATAGGTCAATCCCTATCCCAGTAATCATTACTTAGGACATGTTGTTTTGTAATTTTTGCTAGCGAAAGGTAGTGTTTTTTTTTTATGTGCCAAAAGAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15947#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GAGNACGNTGTGGGCGGATGCGTGGGCGGACGCGTGGGCGGACGGTGGGCGGACGGTGGGTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGTGGACTNTACAACATCGTCATCATCTCCTTCTACAGGCTTTTCGGCCATGGCGCTAATGG] [+] EMBL OSC101221 [GAGNACGNTGTGGGCGGATGCGTGGGCGGACGCGTGGGCGGACGGTGGGCGGACGGTGGGTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGTGGACTNTACAACATCGTCATCATCTCCTTCTACAGGCTTTTCGGCCATGGCGCTAATGG] consensusID : consensus_15947#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [TCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329753 [TCATTACTTAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAAGCTAGTGTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATCGACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 ACACAACAGCACTCCACACACAATTACACAACAATGGCGTCCGAACAACAACGCCGGCGA 60 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TCACCACCTACCATCCTCGCCGCCATCCTTCTTCTCTCCTTCTTGGCGACGGCCAACCTC 120 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 GCCGGCGCCATCGATCCAGCCGGAAGGAGACGGAACGTGGTCGTCTTCTGGGGAGGCAAC 180 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 AAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGTGGACTCTACAACATCGTCATCATC 240 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TCCTTCTACAGCCTCTTCGGCCATGGCCGCTACTGGGACGACCTCTCCGGCCACGACCTC 300 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 CGCCACATCGGCGCCGACATCACCCACTGCCATTTCAAGGCCGTCTACGTCCTCCTCTCC 360 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 ATCGGCGGCGGCGATGGAAAAGACTACTCCCTACCTTCCTCCAAATCCGCCGCCGACGTC 420 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 GCCGACAACCTCTACAACTCCTTCCTCGGCGGCAGCCGCCCGGGAGTCTACCACCCATTC 480 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 GGCGATGACGTCACAGTCGTCGGCATTGACTTCTTCATTGACCGCGGTCAACCCGACCAC 540 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TACTACGAGATCGCCGAGCGGATCAACTACGACACCCGCCACTGGCGTGACCCCATCGGG 600 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ------------------------------------------------------------ consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TTCAAGCTGACGGCGACGGTGAGTTGTGCGTACGACGACTCTGACCCCAGGATGAAGAAG 660 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ---------------------CGGCGAATCCACGTCAGGTTCTACGATGATCCGAGGTGT 39 consensus_15947#2 --------AACCTACCTT--CCGGGGAATCCACGTCAGGTTTTACGATGATCCGAGGTGT 50 consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 GCGCTGGAAACCTACCTTTTCCGGCGAATCCACGTCAGGTTCTACGATGATCCGAGGTGT 720 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 TCATNCACCCATGCCGGGCTCGCCGGGCGTCATGGCNCAGTGGAACAGGTGGTCGGCGAG 99 consensus_15947#2 TCATACAACCATGCCGGGCTTGCCGGG-GTCATGGCGCAGTGGAACAGGTGGTCGGCGAG 109 consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TCATACAACCATGCCGGGCTCGCCGGC-GTCATGGCGCAGTGGAACAGGTGGTCGGCGAG 779 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 TTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGNCG-CGAATTTGACGGGGAAGAA 158 consensus_15947#2 TTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAAAA 169 consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TTACCCTTATAATGGGAAGATTTACTTGGGGCTCGCGGCGGCGAATTTGACGGGGAAGAA 839 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 TGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGCCGGTGCAGAAGNCGGA 218 consensus_15947#2 TGACATGGTCCCCGTCGGTGAGCTTTACCGGAAACTGCTGCCGGCGGTGCAAAAAACGGA 229 consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TGACATGGTCGCCGTCGGTGAGCTCTACCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGA 899 consensus_15947#3 ------------------------------GAGNACGNTGTGGGCGGATGCGTGGGCGGA 30 consensus_15947#1 TACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACG 278 consensus_15947#2 TACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCCCTACGGACG 289 consensus_15947#4 ---------------------------------------------------------TCA 3 consensus_15947#0 TACCTACGGAGGAGTGATGCTTTGGAACAGCTACTATGACTCCATCACTCACTACGGACG 959 consensus_15947#3 CGCGTGGGCGGACGGTGGGCGGACGGTGGGTCCACACACAATTACACAACAATGGCGTCC 90 * consensus_15947#1 GTATGTCAGTGCCTGGGCTTAA---TTATAAGATTCAGAGATCAACCAACGATAATCTCT 335 consensus_15947#2 GTATGTCAGTGCCTGGGCTTAA---TTATAAGATTCAGAGATCAACCCACGATAATTTTT 346 consensus_15947#4 TTAC-TTAGTACATGTTGTT-----TTGTAATCTTTG----CTAGCGAAAGCTAGTGTTT 53 consensus_15947#0 GTATGTCAGTGCCTGGGCTTAA---TTATAAGATTCAGAGATCAACCAACGATAATCTCT 1016 consensus_15947#3 GAACAACAACGCCGGCGATCACCACCTACCATCCTCGCCG-CCATCCTTCTTCTCTCCTT 149 * * * * * * * * * * * * consensus_15947#1 CTATATATACGTGTGCCTC-----CATCATCAGTCCAATCCGTGCGTGCATATAGCTCAA 390 consensus_15947#2 TTATATAAACGTGTGCCTC-----CATCATCAGTCCAATCCGTGGGTGCATATAGGTCAA 401 consensus_15947#4 TTTTTT---TATGTGCACA-----ACTCGGTGTGCCG--CCATACATGCATGTG---TGA 100 consensus_15947#0 CTATATATACGTGTGCCTC-----CATCATCAGTCCAATCCGTGCGTGCATATAGCTCAA 1071 consensus_15947#3 CTTGGCGACGGCCAACCTCGCCGGCGCCATCGATCCAG-CCGGAAGGAGACGGAACGTGG 208 * * * ** ** * consensus_15947#1 TCACTATCACAGTAATCATTACT--TAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAA 448 consensus_15947#2 TCCCTATCCCAGTAATCATTACT--TAGGACATGTTGTTTTGTAATTTTTGCTAGCGAAA 459 consensus_15947#4 TCGACGT----------ATCAGT--CTGTACTCTCCCTTTTTTA--TCTTGCTAGCGAAA 146 consensus_15947#0 TCACTATCACAGTAATCATTACT--TAGTACATGTTGTTTTGTAATCTTTGCTAGCGAAA 1129 consensus_15947#3 TCGTCTTCTGGGGAGGCAACAAGAACGAAGGCAGCCTCCGTTCAGTCTGCGACAGTGGAC 268 ** * * * * * * ** * * consensus_15947#1 GCTAGTGTTTTTTTTTTTATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATC 508 consensus_15947#2 GGTAGTGTTTTTTTTTT-ATGTGCCAAAAGAAAAAAAAAAAAAAAAAAAAAA-------- 510 consensus_15947#4 GCTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 206 consensus_15947#0 GCTAGTGTTTTTTTTTT-ATGTGCACAACTCGGTGTGCCGCCATACATGCATGTGTGATC 1188 consensus_15947#3 TNTACAACATCGTCATCATCTCCTTCTACAGGCTTTTCGGCCATGGCGCTAATGG----- 323 ** * * * consensus_15947#1 GACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTA 568 consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 AA---------------------------------------------------------- 208 consensus_15947#0 GACGTATCAGTCTGTACTCTCCCTTTTTTATCTTGCTAGCGAAAGCTAGTATTTTGAGTA 1248 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 TTATTATCTGCGCAATTTGGATACCCTAAAAAAAAAAAAA-------------------- 608 consensus_15947#2 ------------------------------------------------------------ consensus_15947#4 ------------------------------------------------------------ consensus_15947#0 TTATTATCTGCGCAATTTGGATACCCTACATCGCTACGTGCTTTTGTAAGCTACTAACCT 1308 consensus_15947#3 ------------------------------------------------------------ consensus_15947#1 ----------------------------- consensus_15947#2 ----------------------------- consensus_15947#4 ----------------------------- consensus_15947#0 GACGGGGTTGAACCTGTATAAAAAGTAAA 1337 consensus_15947#3 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||