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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1242 fasta sequence
[TCCTTTTTTTTTTTGATATAATGACA-TAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT-GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT-TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC-GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA-TTTCCACAAACACCTTGTCTAC-AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA-AGAAGAACACGAAGAAGAAGAACA-ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT-CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA]
[+] EMBL CB653185 [TCCTTTTTTTTTTTGAGATAATGACANTAGTTTATAACATTACCTAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAAC ]
[-] EMBL AU093772 [ TTTTTGATATAATGACA TAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGNTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACTGGGAGCATGTNCGCGGCGGCGGGGCAGGGGATCTG ]
[+] EMBL CB655864 [ ATATAATGACA TAGTTTCTTACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGAGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCG ]
[+] EMBL CB649170 [ AAAGAAGATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCCCTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCCCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGCGGCCCGGCAACACGCGCGCG ]
[-] EMBL CA753888 [ CGGAGCACCTCGTGNACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGTCTC CCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTAAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATG ]
[-] EMBL CB661889 [ CCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCA ]
[-] EMBL CB653184 [ ACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCTTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCACCCGA AGAAGAACACGAAGAAGAAGAACA ACACCAAGAGAGCTCTACTCCTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAACCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCC ]
[-] EMBL CB655863 [ GCCTCGCCACCTCGTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACACCCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAAT ]
[-] EMBL CB649169 [ CACCTCTTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTAACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA]
[-] EMBL CA756207 [ GGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTNCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTNCGCGGCCACCACCACCCCCGCCGAGTCNCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATNTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGC ]
[-] EMBL AU065227 [ cnACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTNGTCCGCCGCCACAACCACCCCCGCCGAGTCCCCTTCCGACGACCCCGCCGGCGNCAGCGACGACGACGACATTTTCCACACACACCTTGTCTACAAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGATAGAAGAACNCGAAGAAGAAGAACANCCAACAAGAGAGCTCTACTACTACTAGTACCAATGGCGGATTGACGCGGAGAAGATGTTTCCCCCAGAATTATGAGTTCCACATAAACCCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA]
consensusID : consensus_15949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 924 fasta sequence
[CGCAATTTTACATTGATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGG-TCCGCCGCC-ACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA-TTATGA-GATCACATAAAACCAGTAGAGG-AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAAAGGATGAGGGGAA]
[-] EMBL AK071530 [CGCAATTTTACATTGATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGG TCCGCCGCC ACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAAAGGATGAGGGGAA]
[-] EMBL CA753462 [ GCCGTTTTTCCCTCC GTGGTTCCGCCGCCGACC CCACCCCCCGCGAGTTCCCGTCCGACGACCCCCCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTCGTGTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAA ]
[-] EMBL C93608 [ GAGAGCTCTACTACTACTAGTNACAATGGCGGATTTACNCGGAGAAGATNATTCCCCCAGAATTTATGAGGATCACATAAAACCAGTAGAGGAAANACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTNAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACNAAAATTACGATCTTTCTCACCACCAAGANCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACC ]
[-] EMBL OSR3078A [ CGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCC AATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCANCGGGAGCTGATCTGCTCNAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGA ]
[-] EMBL OSS1250A [ ggtnACATAAAACCAGTAGAGG AAGACAACCGAG AGGAGTGGAGGAAGCAGGANCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATNACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCC ]
[-] EMBL AU062467 [ GGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATNACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATC ]
consensusID : consensus_15949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CAGCTTGCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGGGACGGCTTNGCNGATTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGTGGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGGGACAGGGANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANTACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATCACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNGACACNGATTCGATCAGCGGGAGCNGATNTGTCGAAGAGGACGGAATCGAGNTG]
[-] EMBL BE229770 [CAGCTTGCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGGGACGGCTTNGCNGATTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGTGGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGGGACAGGGANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANTACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATCACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNGACACNGATTCGATCAGCGGGAGCNGATNTGTCGAAGAGGACGGAATCGAGNTG]
consensusID : consensus_15949#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 560 fasta sequence
[TTTTTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACAA-GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG-ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC-TGGAGCATGTGC-G-CGGCGGCGGGGCAGGG-GATC-TGCCATGGCCGGAGCAGC-GG-GTCGTCGGGG-GGGCACTCCTCCTGGATGTCCATGGC-GACGCCGCTGAACTCCTCGACGAC-GC-GGAG-CACCTCGTTGACGCTGCGCAGNCTGTCAGCGATCCCTGTTCTGAA]
[-] EMBL CF302508 [TTTTTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGATGATCACAA GAGGAATTGATATAATGACATAGTTTATAAC ]
[-] EMBL AU184595 [ TTTTTTTTTTTTTTACATNGATGACCACAA GAGGAATTGATATAATGACATAGTTTATNACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAANGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGNTTAGCTCAGAGCTCACTCTCCCATGGCGCGGGGTTCGTTCAGTAC TGGAGCATGTGC GCCGGCGGCGGGGCAGGG GATC TGCCATGGCCGGANCA ]
[+] EMBL BQ529300 [ TTTTTTTTTTTTTTTTCATCACAAGGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGCACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGC ]
[-] EMBL BI808998 [ TTTTTTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGCTG CGG GGTGGGGCAGGGTGATCTTGCCATGGCCGGAGCAGCTGGTGTCGTCGGGGTGGGCACTCCTCCTGGATGTCCATGGCTGATGCCTGTGAACTCCTCGATGACTGCTGGAG CA CTCGTTGACGCTGCGCAG CTGTCAGCGATCCCTGTTCTGAA]
[-] EMBL AU101504 [ TTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATNTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGA NACCTCGTTGACGCTGAGCA NCTGTCGCCGAgctcgg ]
[-] EMBL AU181765 [ TTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGAG CACCTCGTTGACGCTGCGCAGCCTGTC ]
[-] EMBL CB681848 [ ATAACACAGACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGTCCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GG GGAG C ]
[-] EMBL BM419987 [ ttttttttTAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACGTGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGAGACACCTCGTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15949#1 ------------------------------------------------------------
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 TCCTTTTTTTTTTTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAA 60
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ------------------------------------------------------------
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 TTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAA 120
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ------------------------------------------------------------
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 AATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGA 180
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ------------------------------------------------------------
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 AATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCT 240
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ------------------------------------------------------------
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 TAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACTGGAGCATGTGCGCGG 300
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ---------------------------------------------CGCAATTTTACATTG 15
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 CGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCT 360
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAAC 75
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 GGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGC 420
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGAC 135
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 GCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGTTCTCCTGCTCCACGC 480
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 ACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATA---GAGCAGCAGCAGATTAAA 192
consensus_15949#2 ----------------------------------------------------------CA 2
consensus_15949#0 GCGCGTACTGCCCGGCGATTTCGCTGGCGCGCGCCAGCACGCGCGCGTTGTCCGCCTGCA 540
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 GCCT-TGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTT-GATGCCA 250
consensus_15949#2 GCTT-GCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGG-GACG--- 57
consensus_15949#0 GCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACC--- 597
consensus_15949#3 ----------------------TTTTTTTAAAAATTTTTTTTTTTTTTTTTT-------- 30
*
consensus_15949#1 ACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGT 310
consensus_15949#2 ------GCTTNGCNGA----------TTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGT 101
consensus_15949#0 ------GCCTCGCCGA---------CTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGT 642
consensus_15949#3 -------TTTTTTTTT----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 73
* * * ** ** * * *
consensus_15949#1 GGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCG 370
consensus_15949#2 GGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGG-GACAGGG 160
consensus_15949#0 GGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCG 702
consensus_15949#3 TTTTTTTTTTTTTTTTTTTTTTTTT----TTTTTTTTTTTTGATCACAAGAGGAATTGAT 129
* * * ** * * * * *
consensus_15949#1 ACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACG 430
consensus_15949#2 ANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACG 220
consensus_15949#0 ACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACG 762
consensus_15949#3 ATAATGACATAGTTTATAACATTACATA--ACACAAACAACATAATTAACCCTTACAA-- 185
* * ** *** * * ** * ******* * * * * * *
consensus_15949#1 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACT 490
consensus_15949#2 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANT 280
consensus_15949#0 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACT 822
consensus_15949#3 AACACCACATGGACACAGACAAAAGACCATCACTTATT-CAGACACAAAATCATCATCAG 244
* * ** ** * * ** ** * * * ** **** * *
consensus_15949#1 ACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 550
consensus_15949#2 ACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 340
consensus_15949#0 ACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 882
consensus_15949#3 AAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGC 304
* * ***** * * ** ** * ** **** * ** **** * * * *
consensus_15949#1 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 610
consensus_15949#2 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 400
consensus_15949#0 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 942
consensus_15949#3 A------GCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGC--CAACCACAGCTTAGC 356
* *** *** *** * * ** * * ** * ** * ** **
consensus_15949#1 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGG 670
consensus_15949#2 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGG 460
consensus_15949#0 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGG 1002
consensus_15949#3 TCAGAGCTCACTCTCCCATGGCGCGGCG-TTCGTTCAGTACTGGAGCATGTGCGCGGCGG 415
* ** * * ** * ** * * * ** ** * ** * * * **
consensus_15949#1 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 730
consensus_15949#2 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 520
consensus_15949#0 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 1062
consensus_15949#3 CGGGGCAGGGGATCTGCCATGGCCGGAGCAG-CGGGTCGTCGGGGGGGCACTCCTCCTGG 474
* * ** * ** * ** * *** * ** ** * * *
consensus_15949#1 ATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCG 790
consensus_15949#2 ATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNG 580
consensus_15949#0 ATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCG 1122
consensus_15949#3 ATGTCCATGGCGA-CGCCGCTGAACTCC---TCGACGACGCGGAGCACCTCGTTGACGCT 530
** * ** * ** * * *** * * ** * *** * *
consensus_15949#1 ACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGA 850
consensus_15949#2 ACACNGATTCGATCAGCGGGAGCNGATNTG-TCGAAGAGGACGGAATCGAGNTG------ 633
consensus_15949#0 ACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGA 1182
consensus_15949#3 GCGCAGNCT--GTCAGCGATCCCTGTTCTGAA---------------------------- 560
* * * * ****** * * * **
consensus_15949#1 GAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA 910
consensus_15949#2 ------------------------------------------------------------
consensus_15949#0 GAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA 1242
consensus_15949#3 ------------------------------------------------------------
consensus_15949#1 AAGGATGAGGGGAA 924
consensus_15949#2 --------------
consensus_15949#0 --------------
consensus_15949#3 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||