These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 733 fasta sequence [TTTTTTTTTTTTTTTAGATC-AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA-GTGCATTACAGCC-TTTTTTTTAATACTCATTAC-AAACTTAGGATACAAGCTAAAAGATCATTGT-ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT-TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA-TTGTGCCAGTGCCAGCCCCGGGTCCAT-GGAGC-TGGTATGTC-TGGCTTGGTAC-AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT-GC-T-GGGGAGTAAG-TTTTGCAGAGAAACCGCTTGCGGCGTGCT-TGT-AGTGGTAGAGC-ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC-GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG-CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG-CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTCTTCCGCGTTAT] [+] EMBL CF335555 [TTTTTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAAAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAAAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAAAAAAACCGCTTGCGGCGTGCT TGT AGTGGTAAAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCG ] [-] EMBL AU182158 [ TTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTC ] [-] EMBL AU182179 [ TTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCCTTTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAANAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCANAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC AC ] [-] EMBL CA754201 [ TTTTTTTTNTTAGATC AACACATAGTTATATATAGTATCAAATGATCTNGTTATACATTA GTGCATTACAGCC TTTTNTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATNGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAG ] [-] EMBL BI798734 [ TTTTTTTTTTATATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTAGGTGGATTACAGGC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGTGATCCACTGGGGATGTACAGGTGTTGGATCTCTTATGTG TACTACCATATAGTATTACAACCATGGCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGG CGGTACACTACACAAGACTAAAGGTGTTCATTTGTGCCAGTGGCAG CCCGGGTCCATGGGAGC TGGTATGTC TGGCTTGGTAC AACTGGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGAACTGGCTT GGGGAGTAAGCTTTTGGAGAGAAACCGGTTGCGGCGTGCTATGTAAGTGGTAGAGCGACCGGCTCCTTTGgc ] [+] EMBL CF290956 [ TTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC TGGGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTT ] [-] EMBL CF290957 [ TTTTTTTTAGATCAAACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTCTTCCGCGTTAT] [-] EMBL AU163995 [ TTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGNCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCANGTAGACGATCTGCACGGTCGCCTTCTGCGCCGC ] [-] EMBL BI797248 [ TTTTTATATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTG ATTACAG C TTTTTTTTAATACTCATTAC AAA TTAGGATA AAG TAAAAGATCA TGT ATCCACTGGGGATGTACAGGTG TGCATCTCTTA TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAG TAGG CGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAG CCCGGGTCCAT GGAGCGTGGTATGTCTTGGTGTGGTAC AACCTGAAGAACACCT GTTGCTTCTTGAGCT CTCGA CT G T GGGGAGTAAG CTTTGCAG ] [-] EMBL AU085952 [ TTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTTCTGCGCCGCGGGGGCCCGNCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCCGCCGCGAGGA ] [+] EMBL CB966699 [ aataacaTTATATC AACACATAGTTATATATAGTATCAAATGATCTCGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATGGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCAat ] [+] EMBL BU673198 [ CATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG CTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGTCGACATGGCGATCTGGGGAACGTATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATC CTCGTGc ] [-] EMBL AK058810 [ ATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGG ] [-] EMBL CF335556 [ TAATACTCA TACAAAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTC ] [-] EMBL CF280282 [ CATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGA ] [-] EMBL OSC23261 [ TACACTA CTTAANAACTAGGCCGGTACACTACACAAGACTAAAGGTGTNCA TTGTGCCANTGCCAACCNCGGGTCCAT GGAGC TGGTATGTC TGCCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGNCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGNC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGncnta ] [-] EMBL OSC2141 [ CCAT GAAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAANACGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCNGTC CGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCC NGGGGG CAGCNTGCTCCGGCTGCTCGGCCGANATGGCGATCTGGGGAACGGAT NTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAA ] [-] EMBL OSC3271 [ ATGTC TGGCTTGGTAA AACCTNAANAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGAAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTC ] [-] EMBL C97841 [ tct TGNCTTGGTACAAACCTNAAGAACACCTGGTTGCTTCTTGANCTCCTCGACCT AC T GGGAAGTAAG TTTTGCAGAGAAACCGCTTGCGACGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGAGGACGAGGGTGCGGATGTGGAACTCCTCGGGGTCGNC GTCCGCNGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT ] [-] EMBL OSC24341 [ GTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTNGCTNCCGAGGACGGGGNCGAGGGTNCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGNCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGNNAGGAGTTGncat ] consensusID : consensus_15954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATTGGTATCCACGGGGGATGTACAGGTGTTGCATCTCTTATGGGTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATGTCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTTGCAGAGAAACCGCTTGCGGCGTGCATATGTAGGTGGTAAAGCACCGCCTCCTTATGCCTTCTCCTCGTGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA] [-] EMBL BI798770 [TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATTGGTATCCACGGGGGATGTACAGGTGTTGCATCTCTTATGGGTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATGTCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTTGCAGAGAAACCGCTTGCGGCGTGCATATGTAGGTGGTAAAGCACCGCCTCCTTATGCCTTCTCCTCGTGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA] consensusID : consensus_15954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATTAAAATTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCTCGTTATGGGTTACTACCATATAGTATTACAACCAGTGCCAGTGAGAATGCACACACCAGAAAACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGGACTAAGAGGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCAGGGAGCTGGTATGTCTGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTGTGCAGAGAAACCGTTGCGGCGTGCTTGTAGGGGTAGAGCACCGCTCCTTGGGCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGT] [-] EMBL BI798866 [TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATTAAAATTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCTCGTTATGGGTTACTACCATATAGTATTACAACCAGTGCCAGTGAGAATGCACACACCAGAAAACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGGACTAAGAGGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCAGGGAGCTGGTATGTCTGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTGTGCAGAGAAACCGTTGCGGCGTGCTTGTAGGGGTAGAGCACCGCTCCTTGGGCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGT] consensusID : consensus_15954#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [AAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCATGGAGNTGGTATNTNTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNTTGAGCTCCTCGACCTGNTGGGGAGTAAGTTTTGCAGAGAAACCGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT] [-] EMBL AA751855 [AAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCATGGAGNTGGTATNTNTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNTTGAGCTCCTCGACCTGNTGGGGAGTAAGTTTTGCAGAGAAACCGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT] consensusID : consensus_15954#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGATATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGTTTTGCAGAGAAACGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGNGGTCCGGGGNGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCNGGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATGGNGATCTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA] [-] EMBL C28820 [TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGATATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGTTTTGCAGAGAAACGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGNGGTCCGGGGNGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCNGGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATGGNGATCTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA] consensusID : consensus_15954#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCGTGCTTGAANTGGTAGANCAACGCCTCCTNTGCCTTCTCCNCNCTGCCGAGGACNGGGACGANGGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATGGCGATCTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT] [-] EMBL AU069643 [TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCGTGCTTGAANTGGTAGANCAACGCCTCCTNTGCCTTCTCCNCNCTGCCGAGGACNGGGACGANGGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATGGCGATCTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT] consensusID : consensus_15954#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [TTTTTTCTAAAAGAGAATAACATTATATCAAGCACATAGTTATATATAGTATCAAATGATCTGGTTATACATTAGTGGATTACAGCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATGTATCCACTGGGGATGTAC] [-] EMBL BI796967 [TTTTTTCTAAAAGAGAATAACATTATATCAAGCACATAGTTATATATAGTATCAAATGATCTGGTTATACATTAGTGGATTACAGCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATGTATCCACTGGGGATGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15954#1 ------------------------------------------------------------ consensus_15954#2 ------------------------------------------------------------ consensus_15954#4 ------------------------------------------------------------ consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 ------------------------------------------------------------ consensus_15954#0 TTTTTTTTTTTTTTTAGATCAACACATAGTTATATATAGTATCAAATGATCTTGTTATAC 60 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 ------------------------------------------------------------ consensus_15954#2 ------------------------------------------------------------ consensus_15954#4 ------------------------------------------------------------ consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 ------------------------------------------------------------ consensus_15954#0 ATTAGTGCATTACAGCCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAG 120 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 ------------------------------------------------------------ consensus_15954#2 ------------------------------------------------------------ consensus_15954#4 ------------------------------------------------------------ consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 ------------------------------------------------------------ consensus_15954#0 ATCATTGTATCCACTGGGGATGTACAGGTGTTGCATCTCTTATTGTTACTACCATATAGT 180 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 ------------------------------------------------------------ consensus_15954#2 ------------------------------------------------------------ consensus_15954#4 ------------------------------------------------------------ consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 ------------------------------------------------------------ consensus_15954#0 ATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAG 240 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 --------TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATT--ACAAAC 50 consensus_15954#2 --------TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATT--AAAA-- 48 consensus_15954#4 --------------TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGA 46 consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 -------------------------AAAGGTGTTCATTGTGCCAGTGCCAGC--CCCGGG 33 consensus_15954#0 CTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGC--CCCGGG 298 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 TTAGGATACAAGCTAAAAGATCATTGGTATCCACG-GGGGATGTACAGG-TGTTGCATCT 108 consensus_15954#2 TTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCT 108 consensus_15954#4 TATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCT 106 consensus_15954#5 ------------------------------------------------------------ consensus_15954#3 TCCATGGAGNTGGTATNT----NTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNT 89 consensus_15954#0 TCCATGGAGCTGGTATGT----CTGGCTTGGTACAACCTGAAGAACACCTGGTTGCTTCT 354 consensus_15954#6 ----------------------------------------------------TTTTTTCT 8 consensus_15954#1 C-----TTATGGGT-ACTACCATATAG--TATTACAACCA---TGCCA-TGAGA-TGCA- 154 consensus_15954#2 CG----TTATGGGTTACTACCATATAG--TATTACAACCAG--TGCCAGTGAGAATGCA- 159 consensus_15954#4 TGAGCTCCTCGACCTGCTGGGGAGTAA-GTTTTGCAGAGAAAC-GCTTGCGGCG-TGCT- 162 consensus_15954#5 --------TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCG-TGCT- 50 consensus_15954#3 TGAGCTCCTCGACCTGNTGGGGAGTAA-GTTTTGCAGAGAAACCGCTTGCGGCG-TGCT- 146 consensus_15954#0 TGAGCTCCTCGACCTGCTGGGGAGTAA-GTTTTGCAGAGAAACCGCTTGCGGCG-TGCT- 411 consensus_15954#6 AAAAGAGAATAACATTATATCAAGCACATAGTTATATATAG-TATCAAATGATCTGGTTA 67 * * * * * * * * consensus_15954#1 CACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACT---ACACA 211 consensus_15954#2 CACACCAGAAA-ACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACT---ACACA 215 consensus_15954#4 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTCTCCTCGCTGCC-GAGGACGGGGGCGAG 220 consensus_15954#5 TGAANTGGTAGANCAACGCCTC-CTNTGCCTTCTCCNCNCTGCC-GAGGACNGGGACGAN 108 consensus_15954#3 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAG 205 consensus_15954#0 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTCTCCTCGCTGCC-GAGGACGGGGGCGAG 469 consensus_15954#6 TACATTAGTGGATTACAGCTTT-TTTTTAATACTCATTACAAACTTAGGATA----CAAG 122 * * ** * * * ** * * * consensus_15954#1 AG-ACTAAA--GGTGTTCATTGTG-CCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATG 267 consensus_15954#2 AGGACTAAGAGGGTGTTCATTGTG-CCAGTGCCAGCCCCGG-GTCCAGGGAGCTGGTATG 273 consensus_15954#4 GGTGCGGATGTGGAACTCCTCGGGGTCGGNGG-TCCGGGGNGGTCCAGGTAGACGATCTG 279 consensus_15954#5 GGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTG 168 consensus_15954#3 GGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTG 265 consensus_15954#0 GGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTG 529 consensus_15954#6 CTAAAAGATCATGTATCCACTGGGGATGTAC----------------------------- 153 * * * * * consensus_15954#1 TCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGG 327 consensus_15954#2 TCTGG-CTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGG 332 consensus_15954#4 CACGG-----TCGCCTCCTGCGCCN-GGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATG 333 consensus_15954#5 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATG 223 consensus_15954#3 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATG 320 consensus_15954#0 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATG 584 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 GGAGTAAGCTT-TGCAGAGAAACCGC--TTGCGGCGTGCATATGTAGGTGGTAAAGCACC 384 consensus_15954#2 GGAGTAAGCTTGTGCAGAGAAACCG---TTGCGGCGTGCT--TGTAGG-GGTAGAGCACC 386 consensus_15954#4 GNGAT---CTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA-------------- 376 consensus_15954#5 GCGAT---CTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 280 consensus_15954#3 GCGAT---CTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 377 consensus_15954#0 GCGAT---CTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 641 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 GCCTCCTTATGCCTTCTCCTCG-TGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA 443 consensus_15954#2 GC-TCCTTG-GGCTTCTCCTCGCTGCCGAGGACGGGG-GCGAGGGT-------------- 429 consensus_15954#4 ------------------------------------------------------------ consensus_15954#5 GAGTTGCT---------------------------------------------------- 288 consensus_15954#3 GAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT------------------- 418 consensus_15954#0 GAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAAT 701 consensus_15954#6 ------------------------------------------------------------ consensus_15954#1 -------------------------------- consensus_15954#2 -------------------------------- consensus_15954#4 -------------------------------- consensus_15954#5 -------------------------------- consensus_15954#3 -------------------------------- consensus_15954#0 AGCCGTGATATTCTCGTTCTCTTCCGCGTTAT 733 consensus_15954#6 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||