cluster # 16

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Oryza sativa
cluster # 16 cluster # 16 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_16#0 length = 633 sequences # 1

consensus_16#1 length = 622 sequences # 1

consensusID : consensus_16#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTGGTGGTACCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACTCATGTACAATCTTATACCAGACTACCCTTGAAGAAGAAACTAGCTACTGCCGTGCACAATATTACCAAGCAACTCCTTAAGAAGCAACCCATCCCATA]

[+] EMBL CA761503             [TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTGGTGGTACCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACTCATGTACAATCTTATACCAGACTACCCTTGAAGAAGAAACTAGCTACTGCCGTGCACAATATTACCAAGCAACTCCTTAAGAAGCAACCCATCCCATA]




>consensus_16#0
TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTT
TTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAA
TGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCC
TTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCC
TCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCA
TAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTC
CTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAG
CGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTGGTGGTACCTCC
TTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACTCATGT
ACAATCTTATACCAGACTACCCTTGAAGAAGAAACTAGCTACTGCCGTGCACAATATTAC
CAAGCAACTCCTTAAGAAGCAACCCATCCCATA

consensusID : consensus_16#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [AATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGATATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGATTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTAAAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT]

[-] EMBL CA765973             [AATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGATATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGATTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTAAAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT]




>consensus_16#1
AATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGT
GGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTG
CCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTT
TTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGT
ATCGCCGCTGTCACCTAGCGGCCATAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGA
CCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACC
ATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGAC
CGAGCGAAAACTAGATAGGGAAGATATATCAAGCCAAAGTTATGACCATATATAATATCA
TGACATAATAGTTCAACGGTTAGATTTGAATGGTAACTATACTCAATACCTTAATTACCT
GGTGGTACCTCCTTAATAATGGTAAAAATCATCTTATATATATTGCTATATTGTTACCCG
AACAACTCATGTACAATCTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16#0      TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTT 60
consensus_16#1      ------------------------------------AATTCCAATACATATAGAGAACTT 24
                                                        ************************

consensus_16#0      TTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAA 120
consensus_16#1      TTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAA 84
                    ************************************************************

consensus_16#0      TGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCC 180
consensus_16#1      TGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCC 144
                    ************************************************************

consensus_16#0      TTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCC 240
consensus_16#1      TTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCC 204
                    ************************************************************

consensus_16#0      TCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCA 300
consensus_16#1      TCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCA 264
                    ************************************************************

consensus_16#0      TAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTC 360
consensus_16#1      TAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTC 324
                    ******* ****************************************************

consensus_16#0      CTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAG 420
consensus_16#1      CTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAG 384
                    ************************************************************

consensus_16#0      CGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACT-----GGTGGTA 475
consensus_16#1      CGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGA 444
                    ************************************************     **    *

consensus_16#0      CCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACT 535
consensus_16#1      TATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGA 504
                      *    **  *  ** *  * *** *   ****  **  *** * ** *       *  

consensus_16#0      CATGTACAATC-TTATACCAGAC----TACCCTTGAAGAAGAAACTAGCTACTGCCGTGC 590
consensus_16#1      TTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTA 564
                      ** *   *   *****   *     **        *  * * **   ** *   *   

consensus_16#0      ACAATATTACCAAGCAACTCCTTAAGAAGCAACCC----ATCCCATA----------- 633
consensus_16#1      AAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT 622
                    * ***  *   *   *  *   **    *  ****    * * ***