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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1825 fasta sequence
[TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCGCAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACGTGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGTCAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGCTCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGTGCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGATAAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGATTTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTATAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAAGGCAAAATTACCAATTTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACGGAAGCCTTGGTCCGAGTATGTGTTGTCAACAGCAATCTAGAGGTGAAGTTAGATGAACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGAAATCGTTGAAGAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAATCTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGCTCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTGATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATGAACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGAAACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAACTAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAAAAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGAAGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAGAGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTTGATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGCGGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTATTCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTAACGTAAATTCACTGCAAACTCTTTGAAATGTG]
[+] EMBL AK069859 [TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCGCAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACGTGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGTCAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGCTCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGTGCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGATAAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGATTTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTATAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAAGGCAAAATTACCAATTTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACGGAAGCCTTGGTCCGAGTATGTGTTGTCAACAGCAATCTAGAGGTGAAGTTAGATGAACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGAAATCGTTGAAGAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAATCTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGCTCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTGATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATGAACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGAAACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAACTAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAAAAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGAAGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAGAGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTTGATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGCGGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTATTCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTAACGTAAATTCACTGCAAACTCTTTGAAATGTG]
consensusID : consensus_1600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGTATGCTTCTACAAATTCTTTATGTATTTGGTTTGATTTAATTTTGCTAAAGTTATATTGTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGGTAATCTGTGATTAATGCGGTCCAATCTATTTGATATAGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATTTTGTTACTCAGTATGTAACTCAGCTTTTATCATTTTTTTGATTCGTTTGCAGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTA]
[+] EMBL CF305904 [CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGTATGCTTCTACAAATTCTTTATGTATTTGGTTTGATTTAATTTTGCTAAAGTTATATTGTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGGTAATCTGTGATTAATGCGGTCCAATCTATTTGATATAGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATTTTGTTACTCAGTATGTAACTCAGCTTTTATCATTTTTTTGATTCGTTTGCAGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1600#0 TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCG 60
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 CAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACG 120
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGT 180
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 CAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGC 240
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGT 300
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 GCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGAT 360
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGAT 420
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTA 480
consensus_1600#1 -------------------------CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCAT 35
* * ** * ** ** **** **
consensus_1600#0 TAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAA--GGCAAAATTACCAAT 538
consensus_1600#1 TACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGT 95
** * *** * ** ** * *** * * * * * * *
consensus_1600#0 TTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACG 598
consensus_1600#1 ATGCTTCTACAAATTCTTTATGTATTTGGTT-TGATTTAAT--TTTGCTAAAGTTATATT 152
* * ** * * * * * *** * *** * * ***** * * **
consensus_1600#0 GAAGCCTTGGT--CCGAGTATGTGTTG--TCAACAGCAATCTAGAGGTGAAGTTAGATGA 654
consensus_1600#1 GTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATT 212
* * ** * ** ** * **** * * * ** * *** * *
consensus_1600#0 ACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAA 714
consensus_1600#1 GGTCATAG-CCTATCAAAAGAT-TTACATGGTAATCTGTGATTAATGCGGTCCAATCTAT 270
* ** ** * ***** * ** ** ** * * * * * ****
consensus_1600#0 GAAGGATTTAAAAGGAGTCACATGCTCATTA-GTTGATGTTCAGAAATCGTTGAAGAAGC 773
consensus_1600#1 TTGATAT---AGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATT-------T 320
** * * *** * *** ** *** * **
consensus_1600#0 TCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTA 833
consensus_1600#1 TGTTACTCAGTATGTAACTCAGCTTTTATCAT--TTTTTTGATTCGTTTGCA-GCTCTTA 377
* ** ** * ** ** **** * * * *** ** *******
consensus_1600#0 AGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTA 893
consensus_1600#1 AGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTA 437
************************************************************
consensus_1600#0 CTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAG 953
consensus_1600#1 CTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAG 497
************************************************************
consensus_1600#0 AAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCG 1013
consensus_1600#1 AAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCG 557
***** ******************************************************
consensus_1600#0 CCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAAT 1073
consensus_1600#1 CCAAGCTTAAGCATGGATTTA--------------------------------------- 578
*********************
consensus_1600#0 CTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGC 1133
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTG 1193
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 ATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATG 1253
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGA 1313
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAAC 1373
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAA 1433
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGA 1493
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAG 1553
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 AGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTT 1613
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 GATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGC 1673
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 GGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTAT 1733
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 TCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTA 1793
consensus_1600#1 ------------------------------------------------------------
consensus_1600#0 ACGTAAATTCACTGCAAACTCTTTGAAATGTG 1825
consensus_1600#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||