These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1371 fasta sequence [CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC-GGCGATGGC-GGCGAGGTCC-GGCGAGGTGC-GGGC-GAC-GGTGCTGGGCATGGC-GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCGG-N-T-GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT-GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC-GGCGTCGG-TGC-TGGCGTCGGCGCTGGCGT-AGGTGCGAAGGTCGGTGC-T-GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC-GGCGTTGGAGCACGCGCTGGCG-TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC-GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC-GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC-GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA] [+] EMBL AK071325 [CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGACGGCGCGGNN T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGAT ] [+] EMBL AK100437 [CCAAGTCTCCATCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGAT ] [+] EMBL AU163602 [ ACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAAC GNAGNACNGGCGCCGGC NGG N TAGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCG GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTGCGAAAGTCGGTGC T GGCGTCGGTNCGAAAGTCGGTGCTGGCG C GGCGTTTGAACANGCGCTTGCG ] [+] EMBL C72788 [ CCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACNANCCAATCCGTCGAANAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCNGCCATCGANGCCAACNTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCGG T T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGGCGTCGGCGCTGGCATCGGAG TAACGTCGGCGTTGGCGCTCGCGCCGGGCGTCGGTTGCTTGGCGTCNGCGCTNGCGTAAGTTGCGAAGTTCGGTGC TNGGCCTTGGTTCGAA ] [+] EMBL AU182460 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCAGGCGATGGCAGGCGAGGTCCAGGCGAGGTGCAGGGCAGACAGGTGCTGGGCATGGCAGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCNAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG T ] [+] EMBL AU069721 [ CATCAANATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCNANGCCAGCTTCAGCCTGAACGGNGGCG CGGCGCCGGCGCCG N TNNCTCGNCCTGGCNCTGGTGCTGGCGCTGGCG ] [+] EMBL AU063780 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTNAACGGCGGCGCCGGCGCCGGCGCGG N T GCTCGCNCTGG ] [+] EMBL AU063779 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCNTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGC ] [+] EMBL AU069707 [ CATCAANATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCNTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCNAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTCCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCNAGGCCAGCTTCAGCNTGAACGGCGGCG ] [+] EMBL AU069695 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTNCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCNAGGC ] [+] EMBL C98895 [ AGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAAC GNGGNGCCGGCGCCGGCGCGG T T GCTCGCGCTGGCG TGGTGCTGGCG TGGCG T GGCGTCGGCG TGGCATCGGAG TAACGTCGGCGTTGGCGCTCGCG C GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTGCGAA GTCGGTGT N GGCGTCGGTGCGAA GTCGGTGCTGGCGCCGGGCGTTNGAGCAAGCGtt ] [+] EMBL C73245 [ TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGNGGNG CGGCGCCGGCGCGG N T GCTCGCNNTGGCGCTGGTGCTGGCGCTGGCGCT GG ] [+] EMBL AU163610 [ GCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGNAGG NACGGCGCCGGC CGG NTT GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCG GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTTCNAAGt ] [+] EMBL AU163546 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGNGGCG CNGCGCCGNCGCGG N TNGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGCTT GGCGTCGGTGCGAAGGTCGGTGCTNGCGCC GGCGTTGGAGCACGCGCTNGCGTTTGGTGC ] [+] EMBL C93645 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCG CGGCGCCGGCGC G N TNGCTCGCNCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTNGCGCTCGCG C GGCGTCGG TGC TGGCGTNGGCGCTGGCGT AGGTGCGAAGGTCGGTGCTT GGCGTCGGTNCGAAGGTC ] [+] EMBL AU063827 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCNTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCG CGGCGCCGGCGCGG T N GCTCGCNCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCNTTGGCGCTCGCGCC GGCNTCGG TGC TGGCGTCGGCGC ] [+] EMBL AU182484 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGT ] [+] EMBL C98435 [ AAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCNAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCNAGGCCAGCTTCAGCCTGAACGGCGGCGCCGNCGCCGGCNCGA T N NCTCGCNCTGGCNCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGAAGCTAACGTCGGCnt ] [+] EMBL AU197226 [ GGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGC CTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGCGGGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTCGGGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGNGGGAGTCGGCGCTCGCGCCGGCATCNGTGCCAACGGTCGGTGCCAACGTCGGCACTGGCng ] [+] EMBL AU197297 [ GGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTG ] [+] EMBL AU182571 [ GATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA] consensusID : consensus_16006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence [TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTGGGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGA] [+] EMBL AU082113 [TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTGGGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGA] [+] EMBL C71674 [TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCAACGGTGCTNGGCATGGCGGTGCTGGCGCTGCTTCTCCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCNTCACCCGCCAGGCCAGCTTCA ] consensusID : consensus_16006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 310 fasta sequence [CTATATACNAAAGGAAATTTTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGAT-CTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU197359 [CTATATACNAAAGGAAATTTTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGAT CTNCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182536 [ GATGATTCTTAGTCCGGCTTCGTGTTGATCCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAA ] [+] EMBL AU101258 [ ATGATTCTTAGTCCGGCTTCGTGTTGAT CTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAA ] [+] EMBL AU076166 [ tnTTGAT CTTCCTGATTAATTTTGTTCGNGTGTTTTTAATNATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCNGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATNTAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16006#0 CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCG 60 consensus_16006#1 ----------------------TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCG 38 consensus_16006#2 -----------------------------------------CTATATACNAAAGGAAATT 19 * *** ** * * consensus_16006#0 TCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTG 120 consensus_16006#1 TCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTG 98 consensus_16006#2 TTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAAC----------TGATGATTCTT 69 * * ** * * * ****** ** * ** * * ** consensus_16006#0 GGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCC 180 consensus_16006#1 GGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCC 158 consensus_16006#2 AGTCCGGC----TTCGTGTTGATCTTCCTGATTAATT-TTGTTCGTGTGTTTTTAATTAT 124 * *** * * * ** * * *** * ** * * * consensus_16006#0 AACGTCGGCGTCACCCGCCAGGCCAGCTTCA-GCC-TGAACGGCGGCGCCGGCGCCGGCG 238 consensus_16006#1 AACGTCGGCGTCACCCGCCAGGCCAGCTTCA-GCC-TGAACGGCGGCGCCGGCGCCGGCG 216 consensus_16006#2 TTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCA 184 * ** * *** * ** *** ** * * *** * * consensus_16006#0 CGGNTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAG 298 consensus_16006#1 CCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAG 276 consensus_16006#2 TCGAATCATTCAGTG-TTCTTGTGTTTGTAATCTCTTGTTCTTCTTCG-TGATCTCGGAG 242 * * * ** ** *** * * * * * ** ** ** ****** consensus_16006#0 CTAACGTCGGCGTTGGCGCTCGCGCCGGCGTCGGTGCTGGCGTCGGCGCTGGCGTAGGTG 358 consensus_16006#1 CTAACGTCGGCGTTGGCGCTCGCGCCGGCG------CTGGCGCTGGTGCGGGCATCGGCG 330 consensus_16006#2 ATA-TATAAATATATATA-TAGCGATTTTA--------ACTGTTAAAAAAAAAAAAAAAA 292 ** * * * *** * consensus_16006#0 CGAAGGTCGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGCCGGCGTTGGAGCACGCG 418 consensus_16006#1 CCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGT--GCGCGCGAA 388 consensus_16006#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 310 ** consensus_16006#0 CTGGCGTTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCG 478 consensus_16006#1 CAGGCA---GAAC-AGCTTCAGCATGAACAGCG-CGTGACCGTC--TGATACCACCAACC 441 consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTG 538 consensus_16006#1 CCGGC--TGGT--TGA-------------------------------------------- 453 consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTG 598 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTG 658 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCG 718 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCG 778 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGTGCTGGTGCTGGCGCTGGCGCTGGTGCGGGAGTCGGCGCTGGAGCTCGCGCTGGCA 838 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TCGGAGCTAACGTCGGTGCCAACGTCGGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTG 898 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAACGTCGGTGCCAACG 958 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACG 1018 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCA 1078 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGC 1138 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 CGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTC 1198 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 GTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCA 1258 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 GGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCT 1318 consensus_16006#1 ------------------------------------------------------------ consensus_16006#2 ------------------------------------------------------------ consensus_16006#0 TCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA 1371 consensus_16006#1 ----------------------------------------------------- consensus_16006#2 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||