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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACTTGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGGTTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCATGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAACATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGTTGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTATAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTTATATCTAGA]
[+] EMBL CF306500 [TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACTTGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGGTTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCATGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAACATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGTTGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTATAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTTATATCTAGA]
consensusID : consensus_1604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[GATTCGGCACGAGNTCGAGCTNAACATACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGTTGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNTAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTTATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCACATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCACCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCNCATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCNGGAAC]
[+] EMBL AA753118 [GATTCGGCACGAGNTCGAGCTNAACATACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGTTGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNTAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTTATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCACATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCACCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCNCATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCNGGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1604#0 TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACT 60
consensus_1604#1 ------------------------------------------------------------
consensus_1604#0 TGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGG 120
consensus_1604#1 ------------------------------------------------------------
consensus_1604#0 TTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCA 180
consensus_1604#1 ------------------------------------------------------------
consensus_1604#0 TGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAAC 240
consensus_1604#1 ------------------------------------------------------------
consensus_1604#0 ATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCAT 300
consensus_1604#1 -----------GATTCGGCACGAGNTCG---AGCTNAACATACTTGTGCATGTTTCGCAT 46
* ** * * * * * * ** *** ********************
consensus_1604#0 CGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACAT 360
consensus_1604#1 CGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACAT 106
************************************************************
consensus_1604#0 GCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGT 420
consensus_1604#1 GCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGT 166
*********************** *********** ************************
consensus_1604#0 TGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTAT 480
consensus_1604#1 TGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNT 226
********* **************************** ********* *** ***** *
consensus_1604#0 AATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTT 540
consensus_1604#1 AATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTT 286
***************************************************** ******
consensus_1604#0 ATATCTAGA--------------------------------------------------- 549
consensus_1604#1 ATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCA 346
*********
consensus_1604#0 ------------------------------------------------------------
consensus_1604#1 CATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCA 406
consensus_1604#0 ------------------------------------------------------------
consensus_1604#1 CCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCN 466
consensus_1604#0 ------------------------------------------------------------
consensus_1604#1 CATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCN 526
consensus_1604#0 -----
consensus_1604#1 GGAAC 531
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||