These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 887 fasta sequence [CCAGGCGTCCGATGGCTTCGGAGAAGGAGGCGGCGCTCGCCCCGTGCCCAACGACTAACCCCCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCA-CTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC-AAGTGAAGGATGGATTAACTGGCCTATCAAAGG-CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG-CAGGAGGGACTTGAAGATGGCTA-CCGTATTGTCATCAATGATGG-CCCCAGTGGATGCCAATCTGTTTA-CCACATACATGTACATCTCCTCGGAGG-CAGG-CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA--C-AGACACA-TTGCGTTCTCACTA--AAAAAA--AAAATTTTTTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACTCAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGATTGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAACTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATTACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG] [+] EMBL BI798359 [CCAGGCGTCCGATGGCTTCGGAGAAGGAGGCGGCGCTCGCCCCGTGCCCAACGACTAACCCCCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCA CTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC AAGTGAAGGATGGATTAACTGGCCTATCAAAGGCCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCCAGGAGGGACTTGAAGATGGCTACCCGTATTGTCATCAATGATGGCCCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGGCCAGGCCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA CAAGACACA TTGCGTTCTAA A AAAAAA A ] [+] EMBL BI804937 [ ATCAAGAAGGAAATACCTTCCACCTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC AAGTGAAGGATGGATTAACTGGCCTATCAAAGG CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCCAAGTTGTTGCCAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCCATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACCATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA C AGACACC TTGCGTTCTCACTAGTAAAAAA AAAA ] [+] EMBL AW154977 [ cGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGG CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGTCTCTTCGTTGAATAATTCCTGTGACTGGCATAACAATTGGTGCCCTGAACTTATGCCATATGTGTGGGGA GTTACCACGACAGGACATGAGCATACTGCGATGA ATATGGA C CGATACA CTGCGGT TCACTT ATAATACCGGCTTTTTTTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACTCAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGATTGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAACTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATTACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG] [+] EMBL BI795338 [ AAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACT GCCGCCGGGCTAACGAGTGCCCCTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAAC ATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGACCC AGACACATTTGCGTTCTCACTA AAAAA ] [+] EMBL C22422 [ GTTACCNCCTCTATGTTGCCAAAGTTNTTNCAAAG CAGGAGGGACTTGAAGATGGCTA CCTTA TGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTACCCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA CAAGATACA TTGNGTTNTCA A AAAAAA AAAA AAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL D42223 [ TTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTA ] consensusID : consensus_16040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 769 fasta sequence [TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC--GCCGT-G-CCCAAC-GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA-TGTTG-CCAAAGTTGTTGCAAAGCAGGAGGGAC-TTGAAGATGGCTACCGTA-TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG-TTTACCACATACATGTACATCTCCTCGGA-GGCAGG--CAGATG-AACT-GGCCGCCGGGCTAA-CGAGTG-CCCGT-C-TGTTGAACTGCCTTCAT-GGCAA-GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT-GGCATAACAATTGGTGCCCTGAACTTAT-GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT-GATTTAT-GGACAA-GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCAGATGGAGTTGATAAAAAAAAA] [+] EMBL CF323553 [TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGG GAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT G ] [+] EMBL C74185 [ ACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCN GTTG N CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAANGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CC AAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTATTTGTCATCAATGATGG CCCANTTGATGCCAATCTG TTNCCACATACATGT CATCTCCTCGNA GCAGG AGATG ACT GGCCNCGGG ] [+] EMBL CF300441 [ CGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATG ] [+] EMBL AK121029 [ TCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCA ] [+] EMBL CF338113 [ TCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAAC ] [+] EMBL CB096561 [ TTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGNGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCGA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAAGGACACATT ] [+] EMBL AU173566 [ TTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGC CCGTNGNCCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCNAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA NGCAGG CAGATG AACT GGCNGCCGGGCTAA CGA TT NCCGT CTTGTTGAACTGCCTTCCT G ] [+] EMBL AK103503 [ TCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACA ] [+] EMBL BP184998 [ aCGAGGGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTT ] [+] EMBL AU078258 [ ATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC G CGTNG CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGAGGGCAGGGCCAGATGAAACTGGGCCGCCGGGCTAA CGAGTGCCCCGT C TGTTGAACTGCCTTCATGGGCAAGGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGGCATAACAATTGGNGCCCTGAACTTATGGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTaaaaa ] [+] EMBL C22421 [ CCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC G CGTNGNCCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAAGNGAGGG CCCGTGC TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTC ] [+] EMBL CA998392 [ TCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACC ] [+] EMBL OSSS24621 [ GGCGTCGGAGAAGGAGGCGGCGCTCGCCCNNNCGT CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAANGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATTGTTG CCAAAGTTGTTGCAAAGAAGGAGGCACTTTGAAGATGGCTACCGTA TTGTCATCAATGNTGGGCCCCGTNGNTGCC ATNTGNTTTACCACATACAatg ] [+] EMBL AU091333 [ GGCGCTCGCC GCCGT G CCCANCGGACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCAaaaaa ] [-] EMBL CF300440 [ GACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTttaaaaaa ] [+] EMBL AU172808 [ AGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTaaaaaa ] [+] EMBL C22390 [ AGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCNATGGANTTATGGGACAA GATACATTGCGNTCTCACTAGTGATTACNGCGTTTTggggg ] [+] EMBL C22389 [ CTCTA TGTTGCCCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCAGATGGAGTTGATAAAAAAAAA] consensusID : consensus_16040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 639 fasta sequence [ATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA-CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC-AGATGAACTGGCCGCC-GGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN] [+] EMBL CA756030 [ATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC AGATGAACTGGCCGCCGGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN] [+] EMBL BE040168 [ TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC AGATGAACTGGCCGCC GGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN] [-] EMBL BI306736 [ ggGGCGTTCGCCGCAGTGCCTAGGGACAACCCCCACCAT TTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTTTATGTTGCCAAAGTTGTTGCAAAGCAGTAGGGACTTGAAGATGGCTACCGTATTGTCATCAATTATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCTTCGGAGGCACGCTAGATGAACTGGCCGCC GGGTTAACGAGTGCCCGTTTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGACAAAACACATTGGGTTCTCATTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16040#1 TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGA 60 consensus_16040#2 -------------------------------------------------------ATCGA 5 consensus_16040#0 ---------------------------------------------------------CCA 3 * * consensus_16040#1 TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA---C 117 consensus_16040#2 TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA---C 62 consensus_16040#0 GGCGTC-CGATGGCTTCGGAGAAGGAGGCGGCGCTCGCC-CCGTGCCCAACGACTAACCC 61 * ** * ***** ************************ ************** * * consensus_16040#1 CCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGAT 177 consensus_16040#2 CCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGAT 122 consensus_16040#0 CCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGAT 121 ** ***************************************************** *** consensus_16040#1 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 237 consensus_16040#2 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 182 consensus_16040#0 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 181 ************************************************************ consensus_16040#1 CCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 297 consensus_16040#2 CCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 242 consensus_16040#0 CCCAA-GTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 240 ***** ****************************************************** consensus_16040#1 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 357 consensus_16040#2 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 302 consensus_16040#0 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 300 ************************************************************ consensus_16040#1 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 417 consensus_16040#2 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 362 consensus_16040#0 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 360 ************************************************************ consensus_16040#1 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 477 consensus_16040#2 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 422 consensus_16040#0 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 420 ************************************************************ consensus_16040#1 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 537 consensus_16040#2 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 482 consensus_16040#0 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 480 ************************************************************ consensus_16040#1 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATG 597 consensus_16040#2 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATG 542 consensus_16040#0 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATG 540 ************************************************ *********** consensus_16040#1 ACCATCCTGCTATGATTTATGGACAAGATACATTGCGTTCTCACTAGTTATTACTGCTTT 657 consensus_16040#2 ACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTT 602 consensus_16040#0 ACCATCCTGCTATGATTTATGGACA-GACACATTGCGTTCTCACTAAAAAAAAAAATTTT 599 ************************* ** ***************** * * *** consensus_16040#1 TTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATT 717 consensus_16040#2 TTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN----------------------- 639 consensus_16040#0 TTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACT 659 ** * * * consensus_16040#1 TCAAGAG--CAGTGCAGTGA----AAGATGATCTTCAGATGGAGTTGATAAAAAAAAA-- 769 consensus_16040#2 ------------------------------------------------------------ consensus_16040#0 CAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGAT 719 consensus_16040#1 ------------------------------------------------------------ consensus_16040#2 ------------------------------------------------------------ consensus_16040#0 TGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAA 779 consensus_16040#1 ------------------------------------------------------------ consensus_16040#2 ------------------------------------------------------------ consensus_16040#0 CTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATT 839 consensus_16040#1 ------------------------------------------------ consensus_16040#2 ------------------------------------------------ consensus_16040#0 ACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG 887 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||