These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 985 fasta sequence [CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA-GAAAAAGCT-GAGGCCAAATGGT-GGAAG-AAGC-TTGTTCGAGATGATCAAAAGGCACCACAC-TTTGTGAAAG-TTGAC-TGGGACAAAT-GGGTTGA-TGAAGATGATGAT-GGTGCTGATGTCAACGT-GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT-GGAATGGGCGGAATGGGTGATATGATGGGTGGCA-TGGGTGGTATGGGTGG-CATGGGTG--GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG-CGGTATGGGTGGCA-TGGGTGG-CA-TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG-AGC--AATCGAAGGCCC-C-T-CTAC-ATAATTCCTTTCTCTGT-TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT-GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG-CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC-GCTCTGCAATCATATATTAAGCTTTGGAT-CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK112034 [CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTT ] [+] EMBL CF315195 [ TTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGG ATGGGTGGAATGGGTGGGAATGG ] [+] EMBL AK104798 [ TCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCT ] [+] EMBL AU070089 [ gaactacgtCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACANGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGNGAGCAAAATAAGTGTAGGTGTTAGGTNCATATTCTGTATTGTA GAAAANGCT GAGGCCAAATGGT GGAAG ANGCTTTGTTCGNGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC T ] [+] EMBL AU182549 [ CTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT ] [+] EMBL AU064496 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGAGAGCANAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACACTTTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT NGTGCTGATGTCAACGT GGNTGGNATTGACTTTTCGA ] [+] EMBL AU068730 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAGAAAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTTAC TGGGNCAATG GGGTTGA TGAAGATGATGAT GGTGCTGATGTC ACGT GGATGG ATGGACTTT ] [+] EMBL AU069265 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTTTTTNTNTGCTACAGCTGGAACTGATGGGAACTTATACGATTCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTNTTAGGTCCATATTCTGTATTGTAGGAAAAAGCTNTGGGCCCAATGGTt ] [+] EMBL AU063226 [ nCGCAAAACCCTCNGCCCTCACCCNCCACCACCACCNTCNCCTCCACCGGTAAACNGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGTNGGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAGTTTGACTTGGGACAAATNGGGTTGATTGAGGATGATGATNGGT CTGATGTCAACGTNGGTTGGAtt ] [+] EMBL AU069133 [ CGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT G ] [+] EMBL AU175004 [ ACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTNGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGN GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TG ] [-] EMBL CF315196 [ TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaa ] [+] EMBL BI805680 [ GTGGCANTGGGTGGTATGGGTGGCCTTGGGTG GCCTGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCACTGGGTGGNCACTGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCNAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC CATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACCTTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCCACTGAGTACGCCAACCNTTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAA ] [+] EMBL BI810542 [ TGCTATGGGT G CATGGGTGGCGCAT GCTGAGATGATGGGTGGCATGGGTGGTATGGGACGGTATGGGTGGCA C TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGCCTGTCTGAAGCCGG AAATCCCAGGATTCGGACGCTAAAACCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGTGTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATAGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGTCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCGGAAAAAAAAAA ] [-] EMBL CA999278 [ TGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT ] [+] EMBL AU082211 [ GATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaaaa ] [+] EMBL AU175003 [ TATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTNCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C74668 [ GGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAAC ] [+] EMBL C74670 [ TCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG ] [-] EMBL AU225814 [ ccGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGgc ] [-] EMBL AU225784 [ AGTCGGACGCTAAAGCCGAGACAAGTTAGAAGCAAAATCGAAGGCCCACATAATACAATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGg ] [+] EMBL AU166780 [ ntnTGT TGCATCCCGTCTTTTATGGATNTGGTGAACTGAANAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGNACGCAAACCATTCTTGGATTGTTTTTNTTAATGCGCTTTGANGCTTCATCNGCTCTGCAATCATATATTAAGCTTTGGATGCTTTTAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_16047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence [GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG-CCGGTATGGGTTGCCA-TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082205 [GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG CCGGTATGGGTTGCCA TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI805820 [ CATGGCTG AGATGATGGG TGGCATGGGTGGTATGGTGCGGTATGGTNTGGCACTGGG TGGCATGGATG AGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGC ATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAAC TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCC ACTGAGTAC C AACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAaaaaa ] [-] EMBL CA998942 [ TTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGAT ] consensusID : consensus_16047#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC] [+] EMBL OS0347A [ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC] consensusID : consensus_16047#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG] [+] EMBL CF301165 [TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16047#0 ------------------------------------------------------------ consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 --------------------------GGAATGGTTGAAATGGGCCGAATTGGNTGATTTA 34 consensus_16047#2 ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAAT-GGGTGATATG 59 consensus_16047#0 --------------------------------------------CTT---CCATTCCCCA 13 consensus_16047#3 ---------------------TGGACTGAAGGAGTAGAAACATCTTT---TTATTCCCCA 36 consensus_16047#1 ATGGGTTGCCATGGGTTGGTATGGTTGCC-TGGGTGGCCATGGCTGAAGATGATGGGTTG 93 consensus_16047#2 ATGGGTGGC-ATGGGC-AGTATGGGTGCAATGGGTTG--ATGGCTGA-GATGATGGGT-G 113 ** consensus_16047#0 AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 70 consensus_16047#3 AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 93 consensus_16047#1 GCATGGTTGGTATGGCCGGTATGGGTTGCCATGGGTTGGCATGGATGAAGTTCGAGGACG 153 consensus_16047#2 GCATGGGTGGTATGGGCGG-ATGGGT-GGCATGGGT-GGCATGGATGA-GTTCGAG-ACG 168 * * * * * * ** ** * * * * * * * consensus_16047#0 TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 130 consensus_16047#3 TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 153 consensus_16047#1 AGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCTGAAGCCG 213 consensus_16047#2 AGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGC-- 226 * * * ** ** * * *** * ** * * consensus_16047#0 ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 187 consensus_16047#3 ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 210 consensus_16047#1 GAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCT 273 consensus_16047#2 GAAAATCC-AGGAGC--GACG-TAAAGC-GAAGCAAGT-AGAGCAATCGAGG--CCCTCT 278 * * * * * * * ** * * ** ***** * consensus_16047#0 GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 243 consensus_16047#3 GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 266 consensus_16047#1 ACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACA 333 consensus_16047#2 ACATAATTCCTTTCTCTGTT-CATCCTGC--TATATGGATCTGGT-AACTAAGAAACA-- 332 ** * ********* * ** * * * *** ** * ** * ** consensus_16047#0 -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGCAAAA--TAAGTGTA--GGTGT 296 consensus_16047#3 -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGAGAGA--GAGATGGA--TG--- 316 consensus_16047#1 TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAG 393 consensus_16047#2 -TTTACGT----ATGCGTAGGATGGGT-CTCCTT---GAGACG--TCTATGAA-CTGGA- 379 * ** * * * * * * * ** * * consensus_16047#0 TAGGTCCATATTCTGTATTGTAGAAAAAGCTGAGGCCAAATGGTGGAAGAAGCTTGTTCG 356 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 CTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCA 453 consensus_16047#2 CTC--------------------------------------------------------- 382 consensus_16047#0 AGATGATCAAAAGGCACCACACTTTGTGAAAGTTGACTGGGACAAATGGGTTGATGAAGA 416 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 TCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCT 513 consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 TGATGATGGTGCTGATGTCAACGTGGATGGAATGGACTTTTCGAATTTTGGTGGCATGGG 476 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 GTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGC 573 consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 TGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGTGGTATGGGTGG 536 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 TAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTG 633 consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 CATGGGTGGCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGTATGGGTGGCAT 596 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 AATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 692 consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 GGGTGGCATGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCA 656 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 AGACGCAGAGAAGGCTGCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGAC 716 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 AAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTT 776 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 ATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCT 836 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 TGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGT 896 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 TTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATCGT 956 consensus_16047#3 ------------------------------------------------------------ consensus_16047#1 ------------------------------------------------------------ consensus_16047#2 ------------------------------------------------------------ consensus_16047#0 TTAAAAAAAAAAAAAAAAAAAAAAAAAAA 985 consensus_16047#3 ----------------------------- consensus_16047#1 ----------------------------- consensus_16047#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||