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Oryza sativa
cluster # 16047 cluster # 16047       Sequences # 27       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16047#0 length = 985 sequences # 22  
consensus_16047#1 length = 692 sequences # 3  
consensus_16047#2 length = 382 sequences # 1  
consensus_16047#3 length = 316 sequences # 1  

consensusID : consensus_16047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 985
fasta sequence
                              [CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA-GAAAAAGCT-GAGGCCAAATGGT-GGAAG-AAGC-TTGTTCGAGATGATCAAAAGGCACCACAC-TTTGTGAAAG-TTGAC-TGGGACAAAT-GGGTTGA-TGAAGATGATGAT-GGTGCTGATGTCAACGT-GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT-GGAATGGGCGGAATGGGTGATATGATGGGTGGCA-TGGGTGGTATGGGTGG-CATGGGTG--GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG-CGGTATGGGTGGCA-TGGGTGG-CA-TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG-AGC--AATCGAAGGCCC-C-T-CTAC-ATAATTCCTTTCTCTGT-TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT-GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG-CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC-GCTCTGCAATCATATATTAAGCTTTGGAT-CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK112034             [CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG  GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTT                                     ]
[+] EMBL CF315195             [      TTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGG ATGGGTGGAATGGGTGGGAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK104798             [       TCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG  GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCT                                       ]
[+] EMBL AU070089             [ gaactacgtCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACANGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGNGAGCAAAATAAGTGTAGGTGTTAGGTNCATATTCTGTATTGTA GAAAANGCT GAGGCCAAATGGT GGAAG ANGCTTTGTTCGNGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU182549             [                   CTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU064496             [                    TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGAGAGCANAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACACTTTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT NGTGCTGATGTCAACGT GGNTGGNATTGACTTTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU068730             [                    TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAGAAAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTTAC TGGGNCAATG GGGTTGA TGAAGATGATGAT GGTGCTGATGTC ACGT GGATGG ATGGACTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU069265             [                    TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTTTTTNTNTGCTACAGCTGGAACTGATGGGAACTTATACGATTCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTNTTAGGTCCATATTCTGTATTGTAGGAAAAAGCTNTGGGCCCAATGGTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU063226             [                    nCGCAAAACCCTCNGCCCTCACCCNCCACCACCACCNTCNCCTCCACCGGTAAACNGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGTNGGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAGTTTGACTTGGGACAAATNGGGTTGATTGAGGATGATGATNGGT CTGATGTCAACGTNGGTTGGAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU069133             [                     CGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU175004             [                                                                                                                                            ACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTNGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGN GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF315196             [                                                                                                                                                                                                                                                                                                                                                                                                           TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG  GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaa                                                           ]
[+] EMBL BI805680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGGCANTGGGTGGTATGGGTGGCCTTGGGTG  GCCTGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCACTGGGTGGNCACTGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCNAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  CATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACCTTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCCACTGAGTACGCCAACCNTTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAA                 ]
[+] EMBL BI810542             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCTATGGGT G CATGGGTGGCGCAT GCTGAGATGATGGGTGGCATGGGTGGTATGGGACGGTATGGGTGGCA         C  TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGCCTGTCTGAAGCCGG AAATCCCAGGATTCGGACGCTAAAACCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGTGTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATAGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGTCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT  GCGGAAAAAAAAAA                 ]
[-] EMBL CA999278             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT                                 ]
[+] EMBL AU082211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaaaa                                                         ]
[+] EMBL AU175003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTNCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C74668               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAAC                                                                                                                      ]
[+] EMBL C74670               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG                                                                                                                                            ]
[-] EMBL AU225814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC  AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGgc                            ]
[-] EMBL AU225784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGTCGGACGCTAAAGCCGAGACAAGTTAGAAGCAAAATCGAAGGCCCACATAATACAATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGg                             ]
[+] EMBL AU166780             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ntnTGT TGCATCCCGTCTTTTATGGATNTGGTGAACTGAANAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGNACGCAAACCATTCTTGGATTGTTTTTNTTAATGCGCTTTGANGCTTCATCNGCTCTGCAATCATATATTAAGCTTTGGATGCTTTTAAAAAAAAAAAAAAAAAAAAAAAA   ]


>consensus_16047#0 CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCG CCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATT GACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAA CCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCA AAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGG TCCATATTCTGTATTGTAGAAAAAGCTGAGGCCAAATGGTGGAAGAAGCTTGTTCGAGAT GATCAAAAGGCACCACACTTTGTGAAAGTTGACTGGGACAAATGGGTTGATGAAGATGAT GATGGTGCTGATGTCAACGTGGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGA ATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGTGGTATGGGTGGCATG GGTGGCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGTATGGGTGGCATGGGT GGCATGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGAC GCAGAGAAGGCTGCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGT TAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGG ATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTA GAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTT CTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATCGTTTAA AAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_16047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 692
fasta sequence
                              [GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG-CCGGTATGGGTTGCCA-TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU082205             [GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG CCGGTATGGGTTGCCA TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805820             [                                                                       CATGGCTG AGATGATGGG TGGCATGGGTGGTATGGTGCGGTATGGTNTGGCACTGGG TGGCATGGATG AGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGC ATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAAC TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCC ACTGAGTAC C AACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAaaaaa                                                                                                                                                                                       ]
[-] EMBL CA998942             [                                                                                                                                                                                                                                                                                               TTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGAT                                                                                                                                                                                                                ]


>consensus_16047#1 GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTT GCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGGCCGGTATGGGTT GCCATGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTA AACCTCAAGACGCAGAGAAGGCTGCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAG CCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCC GTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGT GCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTT GGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTT GGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCAT GCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTA GTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_16047#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence
                              [ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC]

[+] EMBL OS0347A              [ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC]


>consensus_16047#2 ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGA TGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGG TGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATG AAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGC GACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCA TCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTT GAGACGTCTATGAACTGGACTC



consensusID : consensus_16047#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence
                              [TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG]

[+] EMBL CF301165             [TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG]


>consensus_16047#3 TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCC CTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTG AAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTA AGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAA CTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGA GAGAGAGAGATGGATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16047#0      ------------------------------------------------------------
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      --------------------------GGAATGGTTGAAATGGGCCGAATTGGNTGATTTA 34
consensus_16047#2      ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAAT-GGGTGATATG 59
                                                                                   

consensus_16047#0      --------------------------------------------CTT---CCATTCCCCA 13
consensus_16047#3      ---------------------TGGACTGAAGGAGTAGAAACATCTTT---TTATTCCCCA 36
consensus_16047#1      ATGGGTTGCCATGGGTTGGTATGGTTGCC-TGGGTGGCCATGGCTGAAGATGATGGGTTG 93
consensus_16047#2      ATGGGTGGC-ATGGGC-AGTATGGGTGCAATGGGTTG--ATGGCTGA-GATGATGGGT-G 113
                                                                           **      

consensus_16047#0      AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 70
consensus_16047#3      AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 93
consensus_16047#1      GCATGGTTGGTATGGCCGGTATGGGTTGCCATGGGTTGGCATGGATGAAGTTCGAGGACG 153
consensus_16047#2      GCATGGGTGGTATGGGCGG-ATGGGT-GGCATGGGT-GGCATGGATGA-GTTCGAG-ACG 168
                         *    * * *    *    * **    **   *  * *   *  *  *         *

consensus_16047#0      TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 130
consensus_16047#3      TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 153
consensus_16047#1      AGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCTGAAGCCG 213
consensus_16047#2      AGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGC-- 226
                         *  * *                ** **    *    *   *** *  **   * *   

consensus_16047#0      ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 187
consensus_16047#3      ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 210
consensus_16047#1      GAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCT 273
consensus_16047#2      GAAAATCC-AGGAGC--GACG-TAAAGC-GAAGCAAGT-AGAGCAATCGAGG--CCCTCT 278
                         * * *     *       * * * **  *      * **  *****      *     

consensus_16047#0      GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 243
consensus_16047#3      GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 266
consensus_16047#1      ACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACA 333
consensus_16047#2      ACATAATTCCTTTCTCTGTT-CATCCTGC--TATATGGATCTGGT-AACTAAGAAACA-- 332
                          ** *  ********* * ** *  *   *    *** **  *  **  *  **    

consensus_16047#0      -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGCAAAA--TAAGTGTA--GGTGT 296
consensus_16047#3      -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGAGAGA--GAGATGGA--TG--- 316
consensus_16047#1      TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAG 393
consensus_16047#2      -TTTACGT----ATGCGTAGGATGGGT-CTCCTT---GAGACG--TCTATGAA-CTGGA- 379
                         *   **    * *     * *   *  *          *        ** *   *   

consensus_16047#0      TAGGTCCATATTCTGTATTGTAGAAAAAGCTGAGGCCAAATGGTGGAAGAAGCTTGTTCG 356
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      CTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCA 453
consensus_16047#2      CTC--------------------------------------------------------- 382
                                                                                   

consensus_16047#0      AGATGATCAAAAGGCACCACACTTTGTGAAAGTTGACTGGGACAAATGGGTTGATGAAGA 416
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      TCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCT 513
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      TGATGATGGTGCTGATGTCAACGTGGATGGAATGGACTTTTCGAATTTTGGTGGCATGGG 476
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      GTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGC 573
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      TGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGTGGTATGGGTGG 536
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      TAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTG 633
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      CATGGGTGGCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGTATGGGTGGCAT 596
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      AATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 692
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      GGGTGGCATGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCA 656
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      AGACGCAGAGAAGGCTGCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGAC 716
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      AAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTT 776
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      ATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCT 836
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      TGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGT 896
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      TTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATCGT 956
consensus_16047#3      ------------------------------------------------------------
consensus_16047#1      ------------------------------------------------------------
consensus_16047#2      ------------------------------------------------------------
                                                                                   

consensus_16047#0      TTAAAAAAAAAAAAAAAAAAAAAAAAAAA 985
consensus_16047#3      -----------------------------
consensus_16047#1      -----------------------------
consensus_16047#2      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)