cluster # 1608

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Oryza sativa
cluster # 1608 cluster # 1608 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1608#0 length = 1364 sequences # 1

consensus_1608#1 length = 567 sequences # 1

consensusID : consensus_1608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1364
fasta sequence

                              [ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTGTACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGGCGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGCGGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGCGCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTGACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCGAGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGGGCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCAAGAATAATTGCAACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGATCGAGACCGGCAACGTGACGCCGTTGTCGGCGCAGCAGGTGCTGGACTGCACCGGCGGGGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCACCGCCAGCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCACCTGCGCCGCCGGCTCCGGCTCCGCGTCGTCCTCGTCCGTCGCCGTCGTCATCCGCGGCGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAATTCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA]

[+] EMBL AK110832             [ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTGTACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGGCGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGCGGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGCGCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTGACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCGAGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGGGCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCAAGAATAATTGCAACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGATCGAGACCGGCAACGTGACGCCGTTGTCGGCGCAGCAGGTGCTGGACTGCACCGGCGGGGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCACCGCCAGCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCACCTGCGCCGCCGGCTCCGGCTCCGCGTCGTCCTCGTCCGTCGCCGTCGTCATCCGCGGCGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAATTCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA]




>consensus_1608#0
ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTG
TACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGG
CGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGC
GGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGC
GCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTG
ACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCG
CCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCG
AGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGG
GCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCAAGAATA
ATTGCAACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGATCG
AGACCGGCAACGTGACGCCGTTGTCGGCGCAGCAGGTGCTGGACTGCACCGGCGGGGACA
ACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCACCGCCAGCGCCG
GCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCACCTGCG
CCGCCGGCTCCGGCTCCGCGTCGTCCTCGTCCGTCGCCGTCGTCATCCGCGGCGTGCAGA
AGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGG
CGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCG
GCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTACGGGACGG
CGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGGGGGAGA
ACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACC
CCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTT
CGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAATTCGGAAGC
ATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGTATGTAT
ATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA

consensusID : consensus_1608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCGAGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGGGCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGTAGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGACCCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGGCAATGAGATTGCGAGGGAGGAGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTTTCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAGCGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCGCAGGCTGGAGCGGGCGCTGTGTGGGATAGGCGGCTAGGGCTTGACTGCTGGCGCAGGATGTTG]

[+] EMBL CA757211             [CCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCGAGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGGGCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGTAGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGACCCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGGCAATGAGATTGCGAGGGAGGAGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTTTCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAGCGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCGCAGGCTGGAGCGGGCGCTGTGTGGGATAGGCGGCTAGGGCTTGACTGCTGGCGCAGGATGTTG]




>consensus_1608#1
CCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACG
AGCCGGCGACCGTGAGGGTGTTGTTCGAGCAGGAGGATTTGGCGGCGAAGCAGCATCTCT
CTCCCTCACGCCCGCCTGCTGGGTGGGGCAGCAAGGACTGACGTGACCTCTTAGCCCGTC
CCCGTGTCCAGGATCAAGACAGAGAGTAGTTGCATACAGCTGCTGTGCGTTCCAGGCGCA
GACGTCGGAATACTGGCTAGTGTAGACCCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGA
GCCCTTTTGGTGGCCTCTACGCGTCGGCAATGAGATTGCGAGGGAGGAGGAGCGCGAGCT
CGCGCGGCGAAGCGATACGTACTTTCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACT
CGGCGTCGCTTCCGCCGCGGAGAGCGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCG
TGAGGATTTGGGGCATACTACGCGCAGGCTGGAGCGGGCGCTGTGTGGGATAGGCGGCTA
GGGCTTGACTGCTGGCGCAGGATGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1608#0      ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTG 60
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      TACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGG 120
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGC 180
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      GGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGC 240
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      GCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTG 300
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      ACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCG 360
consensus_1608#1      ---------------------------------CCGACCTCACCGCCGACGAGTTCCGCG 27
                                                       ***************************

consensus_1608#0      CCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCG 420
consensus_1608#1      CCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCG 87
                      ********************************************* **************

consensus_1608#0      AGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGG 480
consensus_1608#1      AGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGG 147
                      **********   ******************* ******************* * *****

consensus_1608#0      GCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCA-AGAAT 539
consensus_1608#1      GCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGT 207
                      ************* *********   ***    *** ************** ** *** *

consensus_1608#0      AATTGCA-ACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGAT 598
consensus_1608#1      AGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGAC 267
                      * ***** ********** ******  ** *  * ** **    *  ****  *  *** 

consensus_1608#0      CGAGACCGGCAACGTGACGCCGTTG--TCGGCGCAGCAGGTGCTGGACTGCAC-CGGCGG 655
consensus_1608#1      CCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGG 327
                      *   * ***    * *  * ***    * *      *   ** *** **  ** ** ***

consensus_1608#0      GGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCAC-CGCCA 714
consensus_1608#1      CAATGAGAT-TGCGAGGGAGG--AGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTT 384
                        *  * *  *** *******  *    * ****  *  ***    * **  **   *  

consensus_1608#0      GCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCA 774
consensus_1608#1      TCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAG 444
                       *   ** **** *  ****   **     *****  * ***       *  *  * *  

consensus_1608#0      CCTGCGCCGCCGGCTCCGGCTCCGCGTCG-TCCTCGTCCGTCGCCGTCGTCATCCGCG-G 832
consensus_1608#1      CGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCG 504
                      *  * *      *  ***     ***  * **  ***  *     *  *    *  ** *

consensus_1608#0      CGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCC 892
consensus_1608#1      CAGGCTGGAGCGGGCGCTGTGTGGGATAGGCG-GCTAGGGCTTGAC-TGCTGGCGCAGGA 562
                      *  ** * **  * *** *   *  *  * ** ***  *    * * **  *  ****  

consensus_1608#0      CGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGT 952
consensus_1608#1      TGTTG------------------------------------------------------- 567
                       ** *                                                       

consensus_1608#0      GTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTA 1012
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTG 1072
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      GGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCC 1132
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTT 1192
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAAT 1252
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      TCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGT 1312
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      GTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA 1364
consensus_1608#1      ----------------------------------------------------