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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 26 consensus length = 823 fasta sequence
[ATCACTCCACTCCTCCACTCATACACCACCACAC--TGCACACACAC-CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC-GGCGACCACC-GCCTCCGCGCAGTGCACGTTC-GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC-TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG-TCGGAGCCCTGCAACATGGTGCTCACCTCCG-ACGGGTCC-GGCAACAAGCCC-GGGTGGTACGTGAGCT-ACGTGATGGTGACGCAGCT-C-GGGCA-GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT-CAGTGGCT-GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC--GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA-CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCAAAAAAAAAAAACAAAGGTTTAAAGTTA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK058583 [ATCACTCCACTCCTCCACTCATACACCACCACAC TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGC ]
[+] EMBL OSS5034A [ CACTCATACACCACCACAC TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTNGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCTTNTNGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGNGTCGTGGGGCCAGATGGCCGCCGG CACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGNCG TCGGAGCCCTGCAACATGGTGCTNAACTCCG ACGGGTCC GGCAACAAGCCC GGNTGGTACGTGAGCT ACGTGATGa ]
[-] EMBL CB630769 [ ATACACCCCCACACAGTGCACACACACACCCATCAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCC TCTTCCTC TC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCACCGGTGCCTGCATGCCG TCAGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGGAACAAGCCG GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA AGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATCGACGAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCGGCGGCGCCATGATCACCGAGAGGTAGCTGCCTATAGCTCCATCGAGCAGTGTTGT CGTGCATCAGCATGCTAGTAACTTAAAT A AATAAGTTCCATGTTTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAAACGATTCAA TCAGAGAGTGAATTG ]
[+] EMBL AU031499 [ TACACCACCACAC TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGATGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCGTTCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCCGGGCAAAAAGCCCGGGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT CGGGGCAGGGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGATNAAGTGGCTGGGCCATTGACG ]
[+] EMBL CB630768 [ tacccccCCA CACAC TGCACACACACACCCATCAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCC TCTTCCTC TC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCACCGGTGCCTGCATGCCG TCAGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGGAACAAGCCG GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA AGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATCGACGAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCGGCGGCGCCATGATCACCGAGAGGTAGCTGCCTATAGCTCCATCGAGCAGTGTTGT CGTGCATCAGCATGCTAGTAACTTAAAT A AATAAGTTCCATGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAA TCAGAGAGTGAATTGC ]
[+] EMBL AU033278 [ CCACCACAC TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCNTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGG CACGACTACTTTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCG CTGCATNCCG TCGGAGCCCTTCAACATGGTG TTAACTCCG ACGGGTCC GGNAACAAGCCC GGGTTGT ]
[+] EMBL AU066337 [ AC TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCNTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGG CACGACTAN TTNGAGAAGGGGAACCTCGACCGG ]
[+] EMBL BU099200 [ C TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTCC TTTGAGAAGGGGAACCTCGACCGGGTCAGGGGCGCC ]
[+] EMBL AU223233 [ TGCACACACAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGCAGGCGACCACCAGCCTCCGCGCAGTGCACGTTCAGAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGC ]
[+] EMBL CA998023 [ CAC CCAACAAAGATGAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTG ]
[+] EMBL AU065968 [ GAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTTCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGNCCGGAGGAACGNTGGCACCGANGNCCGCGTCTCGCTGCAGGTNCGCGCTGACAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGG CACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGNCTGCATGCNG TCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTTAGCT ACGT ]
[+] EMBL OSC9381 [ GAAGCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGGCNGAGGAACGCCGCAACCGACGCCCGCNTCTNGCTGCAGGTGCGCGCCG CANCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGG CAGATGG CGCCGG CACGACTAC TTCGAGAAGGGG ACCTCGACCGGTTCACGGGC ]
[+] EMBL AU066284 [ GCTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCNTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGG CACGACTACTTTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTNCATGCCG TCGGAGCCCTNCAACATGGTGCTNAACTCCG ACGGGTCC GGCAANAAGCCg ]
[+] EMBL AU066182 [ CTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGC GGCGACCACC GCCTCCGCGCAGTGCACGTTC GANATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCTTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGG CACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCANCTCCG ACGGGTCC GGCAACAAGCCG GGTTGGTACG ]
[+] EMBL BU099183 [ GCCTCCGCGCAGCGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCACCTCCG A ]
[+] EMBL CA998054 [ GCAGTGCACGTTC GAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATCACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCAAAAAAAAAA ]
[+] EMBL AU161729 [ ggCGACG TGACGATNA CAACCT GAGTC TTGGCCAAGATG CGCC GCCACGA TAC TCGAGAAAGGGAA CTCGACCGG TCA GGGCNCC GCGCCT NATG CG TC GAGCCCTGCAACATGGTGCTCACCT CG AC GGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCA CGCCGAGCGGAGGGGCTGCGGCATT GCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGA TGAATT AG TGTTNAAAAAAAAAAAAA ]
[+] EMBL CA998801 [ TCGTGGGGCCAGATGGCCGCCGGCCACGACTAC TTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCG TCGGAGCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATC ]
[+] EMBL AU161841 [ t tcCGAGAAGGGGAACCNCGACCGGTTCAGGGGCGCCGNCGCCTGCATGCCN TCGGAGCCCTGCAACATGGTGCTCACCTCCGAACGNGTCC GGCAACAAGCCC GGGTGGTACGTGAGCTAACGTGATGGTGACGCAGCTAC GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATT GCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTTAATTNNGNNAGTNAAntnatta ]
[+] EMBL AU198204 [ GCCCTGCAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCNCCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCNCCGCACATGCTCACCGCCGANCGGAGGGGCTNCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTNTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTNTAAGCCCTGTACTATGTGTGGGGCNCAGTGTNTGCTTTGCCAATGTAACCGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTT AAAAAAAAAAAAGAAA AAA A AAAAAAAAACAAAAA ]
[+] EMBL AU223264 [ CAACATGGTGCTCACCTCCG ACGGGTCC GGCAACAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTNTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCATCTTTCGTTAACAAAGGTTTATAGTTA AAAAAAAAAA ]
[+] EMBL CA999354 [ CAAGCCC GGGTGGTACGTGAGCT ACGTGATGGTGACGCAGCT C GGGCA GGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGAT CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCATCTTTCGTTAACAAAGGTTTATAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000230 [ T CAGTGGCT GGCCATTGACGAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCATCTTTCGTTAACAAAGGTTTATAGTTA CTGAGTAAAAAAAA ]
[+] EMBL CA998775 [ ATTGACGAGGCACCGCACATGCTCACCGCCGATCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCGTGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAGTGAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCC ]
[+] EMBL CB000664 [ GGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGCGGCGCCATGATCATC GAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCAGTT AAAAAAAAAAAAAAAA AAA A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU031500 [ GGNGGGGCTGCGGCATTTGCGCAGCGGCGCCATGATCATC GNGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTNGTAACTTAAATTAATAATAAGTTCCAGGTCTAANCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAA CGTGATCATAATAAGTCAATTCAATTCAGAGAGTGAATTGCNGTTTGTGCCAAAAAAAAAAAAAAAAaaaaaaaa ]
consensusID : consensus_16123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[CTCTGGGAACAAGCCCGGGTGGTACGTGAGCTACGTGATGGTGACGCAGCTCGGGCAGGGGAGACTCCCGTCGATGACGCACCGGTGGGCGGTGGATCAGTGGCTGGCCATCGACGAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCGGCGGCACCATGATTGGTTGAACGATCCACCTATAGCTCCATGTCAATCACCAGTGCTGTAGTAACCTAAATGAATAAATAAGTTGGGCACAGCTAGTGTATATGCTTTGCCTACTGTAACGTGATGGAAATAAGTCAATTCAATCGGACTGAATTGCCGCAGTTTAAAAAATAA]
[+] EMBL CA757857 [CTCTGGGAACAAGCCCGGGTGGTACGTGAGCTACGTGATGGTGACGCAGCTCGGGCAGGGGAGACTCCCGTCGATGACGCACCGGTGGGCGGTGGATCAGTGGCTGGCCATCGACGAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCGGCGGCACCATGATTGGTTGAACGATCCACCTATAGCTCCATGTCAATCACCAGTGCTGTAGTAACCTAAATGAATAAATAAGTTGGGCACAGCTAGTGTATATGCTTTGCCTACTGTAACGTGATGGAAATAAGTCAATTCAATCGGACTGAATTGCCGCAGTTTAAAAAATAA]
consensusID : consensus_16123#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[CAGTGGCTGGCCATTGACCGAGGCACCGCNCATGCTCACCGCCGAGCGNAGGGGCTGCGGCACTTGCGCAGCGGCGCCATGATCATCGAGGTAGNTGCCTATAGCTCNATNGACCAGTGTTGNCTCTGNGTGCATCAGCATGCTAGTANCTTAAATTNNTAATAAGTTCCAGGTCTAAGCCCTGTNCTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAACGTGATCATAATAAGTNAATTCAATTCAGAGAGTGAATTGCAGTTAAAAAAANAAAAGAAAAAAAAAAAAAAAACAAAAA]
[+] EMBL AU032914 [CAGTGGCTGGCCATTGACCGAGGCACCGCNCATGCTCACCGCCGAGCGNAGGGGCTGCGGCACTTGCGCAGCGGCGCCATGATCATCGAGGTAGNTGCCTATAGCTCNATNGACCAGTGTTGNCTCTGNGTGCATCAGCATGCTAGTANCTTAAATTNNTAATAAGTTCCAGGTCTAAGCCCTGTNCTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAACGTGATCATAATAAGTNAATTCAATTCAGAGAGTGAATTGCAGTTAAAAAAANAAAAGAAAAAAAAAAAAAAAACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16123#0 ATCACTCCACTCCTCCACTCATACACCACCACACTGCACACACACCCAACAAAGATGAAG 60
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 CTTACCATGAAGCTTTCCATCGCCCTGGCCTGCTTCCTCTTCTTCCTCGCGGCGGCGACC 120
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 ACCGCCTCCGCGCAGTGCACGTTCGAGATCCTCGTCAAGACCGACGGCCGGAGGAACGCC 180
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 GGCACCGACGCCCGCGTCTCGCTGCAGGTGCGCGCCGCCAGCGGGCCGACGCTGACGATC 240
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 ACCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACTACTTCGAGAAGGGGAAC 300
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 CTCGACCGGTTCAGGGGCGCCGGCGCCTGCATGCCGTCGGAGCCCTGCAACATGGTGCTC 360
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 ------------------------------------------------------------
consensus_16123#0 ACCTCCGACGGGTCCGGCAACAAGCCCGGGTGGTACGTGAGCTACGTGATGGTGACGCAG 420
consensus_16123#2 ------------------------------------------------------------
consensus_16123#1 -----------CTCTGGGAACAAGCCCGGGTGGTACGTGAGCTACGTGATGGTGACGCAG 49
consensus_16123#0 CTCGGGCAGGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGATCAGTGGCTGGCC 480
consensus_16123#2 ------------------------------------------------CAGTGGCTGGCC 12
consensus_16123#1 CTCGGGCAGGGGAGACTCCCGTCGATGACGCACCGGTGGGCGGTGGATCAGTGGCTGGCC 109
************
consensus_16123#0 ATTGAC-GAGGCACCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCAGC 539
consensus_16123#2 ATTGACCGAGGCACCGCNCATGCTCACCGCCGAGCGNAGGGGCTGCGGCACTTGCGCAGC 72
consensus_16123#1 ATCGAC-GAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCTGCGGCATTGGCGCGGC 168
** *** ***** **** ****************** ************* * **** **
consensus_16123#0 GGCGCCATGATCA-TCGAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGT 598
consensus_16123#2 GGCGCCATGATCA-TCGAGGTAGNTGCCTATAGCTCNATNGACCAGTGTTGNCTCTGNGT 131
consensus_16123#1 GGCACCATGATTGGTTGAACGATCCACCTATAGCTCCATG--TCAAT------------- 213
*** ******* * ** * ********** ** ** *
consensus_16123#0 GCATCAGCATGCTAGTAACTTAAATTAATAATAAGTTCCAGGTCTAAGCCCTGTACTATG 658
consensus_16123#2 GCATCAGCATGCTAGTANCTTAAATTNNTAATAAGTTCCAGGTCTAAGCCCTGTNCTATG 191
consensus_16123#1 -CACCAGTGCTGTAGTAACCTAAATGAATAAA------------TAAGTTGGGCAC---- 256
** *** ***** * ***** *** **** * *
consensus_16123#0 TGTGGGGCACAGTGTCTGCTTTGCCAA-TGTAACGTGATCATAATAAGTCAATTCAATTC 717
consensus_16123#2 TGTGGGGCACAGTGTCTGCTTTGCCAA-TGTAACGTGATCATAATAAGTNAATTCAATTC 250
consensus_16123#1 ----AGCTAGTGTATATGCTTTGCCTACTGTAACGTGATGGAAATAAGTCAATTCAATC- 311
* * ** * ********* * *********** ******* ********
consensus_16123#0 AGAGAGTGAATTGCAGTTTGTGCCAAAAAAAAAAAACAAAGGTTTAAAGTTAAAAAAAAA 777
consensus_16123#2 AGAGAGTGAATTGCAGTT------AAAAAAANAAAAGAAA-----------AAAAAAAAA 293
consensus_16123#1 --GGACTGAATTGCCGCAGTT---TAAAAAATAA-------------------------- 340
** ******** * ****** **
consensus_16123#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 823
consensus_16123#2 AAAACAAAAA------------------------------------ 303
consensus_16123#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||