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Oryza sativa
cluster # 1613 cluster # 1613       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1613#0 length = 753 sequences # 1  
consensus_1613#1 length = 512 sequences # 1  

consensusID : consensus_1613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence
                              [ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG]

[+] EMBL CA767471             [ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG]


>consensus_1613#0 ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAA TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCT CTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCC TCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTC TCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACC AGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACA TGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCC CCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAG GAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCC TAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACA AAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGT GGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCAT TTTACCAGACCCCTAAAACTTTTTAAGNCCTGG



consensusID : consensus_1613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence
                              [CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA]

[+] EMBL CF324192             [CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA]


>consensus_1613#1 CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCC ATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTG CTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCT TGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAG TCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAA AAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAG GATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACC AACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGA AGGCTATGGGCAAAAGTAACCCTAACAATCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1613#0      ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAA 60
consensus_1613#1      ---------------------------------------------------------CAA 3
                                                                               ***

consensus_1613#0      TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG-------------- 106
consensus_1613#1      TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATT 63
                      **********************************************              

consensus_1613#0      ------GCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 160
consensus_1613#1      AAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 123
                            ******************************************************

consensus_1613#0      ATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 220
consensus_1613#1      ATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 183
                      ************************* **********************************

consensus_1613#0      CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 280
consensus_1613#1      CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 243
                      ************************************************************

consensus_1613#0      ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 340
consensus_1613#1      ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 303
                      ************************************************************

consensus_1613#0      TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 400
consensus_1613#1      TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 363
                      ************************************************************

consensus_1613#0      GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 460
consensus_1613#1      GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 423
                      ************************************************************

consensus_1613#0      CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 520
consensus_1613#1      CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 483
                      ************************************************************

consensus_1613#0      CTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTG 580
consensus_1613#1      CTATGGGCAAAAGTAACCC-TAACAATCAA------------------------------ 512
                      ******************* **********                              

consensus_1613#0      ATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCC 640
consensus_1613#1      ------------------------------------------------------------
                                                                                  

consensus_1613#0      ACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTC 700
consensus_1613#1      ------------------------------------------------------------
                                                                                  

consensus_1613#0      TGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG 753
consensus_1613#1      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)