These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG] [+] EMBL CA767471 [ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG] consensusID : consensus_1613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA] [+] EMBL CF324192 [CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1613#0 ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAA 60 consensus_1613#1 ---------------------------------------------------------CAA 3 *** consensus_1613#0 TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG-------------- 106 consensus_1613#1 TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATT 63 ********************************************** consensus_1613#0 ------GCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 160 consensus_1613#1 AAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 123 ****************************************************** consensus_1613#0 ATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 220 consensus_1613#1 ATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 183 ************************* ********************************** consensus_1613#0 CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 280 consensus_1613#1 CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 243 ************************************************************ consensus_1613#0 ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 340 consensus_1613#1 ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 303 ************************************************************ consensus_1613#0 TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 400 consensus_1613#1 TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 363 ************************************************************ consensus_1613#0 GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 460 consensus_1613#1 GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 423 ************************************************************ consensus_1613#0 CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 520 consensus_1613#1 CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 483 ************************************************************ consensus_1613#0 CTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTG 580 consensus_1613#1 CTATGGGCAAAAGTAACCC-TAACAATCAA------------------------------ 512 ******************* ********** consensus_1613#0 ATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCC 640 consensus_1613#1 ------------------------------------------------------------ consensus_1613#0 ACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTC 700 consensus_1613#1 ------------------------------------------------------------ consensus_1613#0 TGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG 753 consensus_1613#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||