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Oryza sativa
cluster # 16136 cluster # 16136       Sequences # 28       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16136#0 length = 752 sequences # 17  
consensus_16136#1 length = 447 sequences # 6  
consensus_16136#2 length = 352 sequences # 4  
consensus_16136#3 length = 314 sequences # 1  

consensusID : consensus_16136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 752
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAA-TGAATATGTTTTTTTGATGACTC--AA-GAG--C-AACA-GGC-AATTACATTTCCATTCCCAAGTATCACAAGTTTATT-GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA--GA---G-AAACCAGAGCC-TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG-TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC-CCGCCCTTGATTAACACAAA-GGTC-GGC-ATGGCC-TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT-CGATCTTGAAGAAGACGGC-GTCGGCGAAGCG-TCCGGCCATGTCCTTGAAGGCCGGCTCGA-TG-AA-GC-GGCA-GGGCCC-G-CACCAGGT-GGC-GGAGAAGTCGATCACGATCAGCTTGT-TGGGGT-TGCTCT-TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC-GGCCACCAC-GCGCG-AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT------TCTCTCTCTCTCTCT-TTTCTCGCCTTGCTCCT-CTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT]

[-] EMBL AU174111             [TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAATTGAATATGATCAGATGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAANAGGACAACCACAGGGTCTNTCACTCCTAGCACCGA  NA   G AAACCANAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTNTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCNAAAGTTCGTCGACAT CGATCTTGAAAAAa                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL BI799971             [                            tttttttttTAAAGAA TGAATATGATCAGATGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB627373             [                                               AATATGATCAGATGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT      TCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCT CTTCGCTTCGCGTG                        ]
[+] EMBL CF307665             [                                                     TTTTTTTGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGCTTACTCCCACTTCACATCGAATTTTGCAGCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU029400             [                                                 ttttTTTTTTTGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAANGT TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA NGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATTAGCTTGT TGGGGT TGCTCT TGTGGGNGGCCCA TGCTCGTNCCAAGTGGCCGTGGAGTGGACGGGCAACCAA GCGCG AGTCG                                                                                                                                                             ]
[-] EMBL BI795376             [                                                     TTTTTTTGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAG TTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAATGGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCCGATCTTGAAGAAGACGGCTGTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AACGCTGGCA GGGCCCTG CACCAGGT GGCTGGAGAAGTCGATCACGATCAGCTTGTATGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGG CGTGGAGTGGAC GGCCACCACTGCG                                                                                                                                                                     ]
[-] EMBL BI795333             [                                                     TTTTTTT  T  TTC  AA GAG  C AACA GGC AGGTACATTTCCATTCCCAAGTATCACAAGTTTATTGGTCTTAAACGCGTTTACTCCCACTTCACATCGAA TTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAA GGAGGCATAAG TTGGGATTTAGGATGAGGAGGATGAAATGAACATG  TGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGA TAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC GCCACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTG  TGGGG  TGCTCT TGTGGGCGCCCCACTGCTCGT CCAGGTGGCCGTGGAGTGGAC GGGCACCAC G                                                                                                                                                                       ]
[-] EMBL BI798529             [                                                     TTTTTTT  T  TTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTG AGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCCGTGGTACTAAATGAGGAATGCAGGCATAAGTTGGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGG C TCCACTTTCCATTGGCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGGGAAGCG TCCGGGCATGTCCTTGAAGGGCGGTCCGATTG AA GC GGGAGGGGCCC G GA CAGGTGGGCGGGAGAAGTCGATCACGATCAGCTTGT AGGGGTATGCTCTATGTGGGCGg                                                                                                                                                                                                                     ]
[-] EMBL AU096551             [                                             ttttttttTTTTTTTGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATNAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAA CGTTCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TG                                                                                                                                                                                                                                   ]
[-] EMBL BI795568             [                                                      TTTTTTGATGACTCCAAAGGAGGCCAAACAGGGCAAATTACATTTCCATTCCCAAGTATCACAAGTTTA T GTCTTAAACGCGTTTACTCCCACTTCACATCGAA TTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAAGGAAAGGAAAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTGGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB627372             [                                                        agaTGATGACTC  AA GAG  C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT      TCTCTCTCTCTCTCT TTTCTCGCCATGCTCCT CTTCGCTTCGCGTGAGCGCAAGCAcc            ]
[-] EMBL AK062383             [                                                                                   A GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA  GA   G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCTCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCT CTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT]
[-] EMBL C74924               [                                                                                                                                                                                                                                                                                                                                                         CTAACCTCCTTCNCCGCCCTTGATTAACACAAA GGTC GGCAATGGCCTTCCACTTTCCATTGCCTCGCCACTTCCGAAANTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGT TNCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT      TCTCTCTCTCTCTC    TCTCTCTTTTCTCg                                        ]
[-] EMBL AU069205             [                                                                                                                                                                                                                                                                                                                                                          TACCNTCNTTC CCGCCCTTGATTACCACAAA GGTCGGGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT      TCTCTCTCTCTCTCTCTCTCT                                                   ]
[-] EMBL AU096550             [                                                                                                                                                                                                                                                                                                                                                                                                       GCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC NCGCG AGTCG CGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCTNCNT TNTTCGCGTGAGCGCAAGCAACAA          ]
[-] EMBL C25952               [                                                                                                                                                                                                                                                                                                                                                                                                            caACTTTCAATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGNC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TGAAA GC GGCA GGGCCC G CACCAGGT GGC GGAGAANTCGATNACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTNCCANGTGGCCGTGGAGTGGAC GGCCACCAC GCGCGNANGNTNC CCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATNTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCTNCAT TCTTCGCGTGAGCGCAAGCAACA           ]
[-] EMBL C26989               [                                                                                                                                                                                                                                                                                                                                                                                                                                                CGACAT CGATCTTGAAGAAGACGNC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GTC GGAGAAATCGATNACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAN GCGCG ANGCTCC CCGTCGTCGGCGGCGGGCGGCGGCGTGAANATCGTCGANAAGAAGGAGCCCATTTCGGTNGCGTGCNTGGTTTGGT      TNTNTNTCT                                                               ]


>consensus_16136#0 TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAATGAATATGTTTTTTTG ATGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCT TAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACA GGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGT TCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAG GTCGGCATGGCCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATC TTGAAGAAGACGGCGTCGGCGAAGCGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGAAG CGGCAGGGCCCGCACCAGGTGGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTC TTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAG TCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATC TCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTCTTCGC TTCGCGTGAGCGCAAGCAACAACTCTTCTTGT



consensusID : consensus_16136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 447
fasta sequence
                              [TTTNTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG-CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGGTCGGCATGG-CCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGAAGCG]

[-] EMBL C97916               [TTTNTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGGTCGGCATGG CCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGAAGCG]
[-] EMBL AU075354             [          TTTTTTTTTTTTTTTTTT   T       AACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGANAGAAACCAGAGCCTGGTACNAAATGAGGAATGCAGG CATAANTTTGGGATTTANGATGNGGAGGATGANATGNACATGTTGACNTTCCNCTCCAGTTCNTCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGNTTAACACAAAGGTCGGCATGGNCCTCCACTTTCCATNGCCTCGCCACTTCCGAAAGT                                                                            ]
[-] EMBL CF330571             [                   TTTTTTTTT   TCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTT                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AU197591             [                      TTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG CATA                                                                                                                                                                                                                                              ]
[-] EMBL CF307666             [                                               ATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGCTTACTCCCACTTCACATCGAATTTTGCAGCATTT                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AA749593             [                                                                                                                                                                                           ACTAAATGAGGAATGCAGGACATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGG CTGCAT                                                                                                                  ]


>consensus_16136#1 TTTNTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCAT TCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTT GCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGA GCCTGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAA TGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCT CCTTCCCGCCCTTGATTAACACAAAGGTCGGCATGGCCTCCACTTTCCATTGCCTCGCCA CTTCCGAAAGTTCGTCGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCAT GTCCTTGAAGGCCGGCTCGATGAAGCG



consensusID : consensus_16136#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 352
fasta sequence
                              [CGAAAGTCGCGACATCGATCTNAAAAAAACGCCGTCGGCGAAACGTCCGGCCATGCCTTGAA-GCCGGCTCGATGAAACGGCAGGGCCCGCACC-AGGTGNCGGAAGAAGTCGATCACGATC-AGCTTGTTGGGGTTGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCAAGCAACAACTCTTC]

[-] EMBL C74067               [CGAAAGTCGCGACATCGATCTNAAAAAAACGCCGTCGGCGAAACGTCCGGCCATGCCTTGAA GCCGGCTCGATGAAACGGCAGGGCCCGCACCAAGGTGGCGGAAGAAGTCGATCACGATCAAGCTTGTTGGGGTTGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCA              ]
[-] EMBL OSC8841              [                                                           GAAGGCCGGCTCGATGAAGCGGCAGGGCCCGCACC AGGTGNCGG AGAAATCGATTACGATC AGCTTGTTGGGGTTGCTCTTGTGGGCGCCNCACTGCTCGTNCNANGTGGCCGTGGAGTGGACGGCCACCACNCGCGAAG TNNCCCGTCGTCGGCGGCGGGCGGCNGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCATTCTTCGCGTGAGCGCAAGCAACAACTCTTC]
[-] EMBL OSC28371             [                                                                                           ACC AGGTGNC GNAGAAGTCGATCACGATC AGCTTGTTGGGGTTGCTCTTNTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTTNCCCGTCGTCGGCGNCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTNGGTCGCGTGCTTGGTTTGGTTCTCTCTNTCTGTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCAAGCAA         ]
[-] EMBL OSS3822A             [                                                                                                                     CGATC AGCTTGTTGGGGTTGCTNTTGTGGGCGCCCCACTGCTCGTNCCAAGTGGCCGTGGAGTGGACGGCCACCANGCGCGAANGCNCCCCGTCGTCGGCNGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATNTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTNTCTCTCTCTTTTCTCGCCTTGCTCCTNCN                               ]


>consensus_16136#2 CGAAAGTCGCGACATCGATCTNAAAAAAACGCCGTCGGCGAAACGTCCGGCCATGCCTTG AAGCCGGCTCGATGAAACGGCAGGGCCCGCACCAGGTGNCGGAAGAAGTCGATCACGATC AGCTTGTTGGGGTTGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGG ACGGCCACCACGCGCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTC GAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTC TTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCAAGCAACAACTCTTC



consensusID : consensus_16136#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence
                              [AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCGCGACACGACTTAAGAAGACGCGTCGCGAAACGTCGGCCATGCCTTTAAGCCGGCTCGATGAAACGCAGGCCCGCACCAGGTGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTCTTGTGGCGCCCCACTGCTCGTCCCAGGTGNCGTGGAGTGGACGGCCACCACGCGCGAGTCCGCGTCGTCGGCGGCGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTNTGGTCTCTCTCTCTCTCTCTC]

[-] EMBL OS0115A              [AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCGCGACACGACTTAAGAAGACGCGTCGCGAAACGTCGGCCATGCCTTTAAGCCGGCTCGATGAAACGCAGGCCCGCACCAGGTGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTCTTGTGGCGCCCCACTGCTCGTCCCAGGTGNCGTGGAGTGGACGGCCACCACGCGCGAGTCCGCGTCGTCGGCGGCGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTNTGGTCTCTCTCTCTCTCTCTC]


>consensus_16136#3 AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCGCGACACGACTTAAGAAGAC GCGTCGCGAAACGTCGGCCATGCCTTTAAGCCGGCTCGATGAAACGCAGGCCCGCACCAG GTGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTCTTGTGGCGCCCCACTGCTC GTCCCAGGTGNCGTGGAGTGGACGGCCACCACGCGCGAGTCCGCGTCGTCGGCGGCGGCG GCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTNTGGTCTC TCTCTCTCTCTCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAATGAATATGTTTTTTTG 60
consensus_16136#1      ------------------------------------------------------------
                                                                                   

consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      ATGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCT 120
consensus_16136#1      ------------------------------------------------------------
                                                                                   

consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      TAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACA 180
consensus_16136#1      ------------------------------------------------------------
                                                                                   

consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      GGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG 240
consensus_16136#1      ------------------------------------------------------------
                                                                                   

consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGT 300
consensus_16136#1      ------------------------------------------------------------
                                                                                   

consensus_16136#2      ------------------------------------------------------------
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      TCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAG 360
consensus_16136#1      ----------------------------------TTTNTTTTTTTTTTTTTTTTTTTTTT 26
                                                                                   

consensus_16136#2      --------------------------------------CGAAAGTCG--CGACATCGATC 20
consensus_16136#3      ------AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCG--CGACA-CGA-C 50
consensus_16136#0      GTCGGCATGGCCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATC 420
consensus_16136#1      TTGACTCAAGAGCAACAGGCAATTACATTTCCAT-TCCCAAGTATCACAAGTTTATTGTC 85
                                                             * *   *     *        *

consensus_16136#2      TN-AAAAAAACGCCGTCGGCGAAACGTCCGGCCATG-CCTTGAAG-CCGGCTCGATGA-A 76
consensus_16136#3      TT-AAGAAGACGC-GTCG-CGAAACGTC-GGCCATG-CCTTTAAG-CCGGCTCGATGA-A 103
consensus_16136#0      TTGAAGAAGACGGCGTCGGCGAAGCGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGA-A 479
consensus_16136#1      TT-----AAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACA 140
                       *      * ***   *        * **    *      *  *          ** ** *

consensus_16136#2      ACGGCAGGGCC---CGCACCAGGTGNCGGAAGAAGTCGATCACGATCAGCTTGTTGGGGT 133
consensus_16136#3      ACGC--AGGCC---CGCACCAGGTGC--GGAGAAGTCGATCACGATCAGCTTGTTGGGGT 156
consensus_16136#0      GCGGCAGGGCC---CGCACCAGGTGGC-GGAGAAGTCGATCACGATCAGCTTGTTGGGGT 535
consensus_16136#1      ACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAA 200
                        *     ** *   * * **  *       ****  *     *    *     *  **  

consensus_16136#2      TGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGC 193
consensus_16136#3      TGCTCTTGTGG-CGCCCCACTGCTCGTCCCAGGTGNC-GTGGAGTGGACGGCCACCACGC 214
consensus_16136#0      TGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGC 595
consensus_16136#1      TGCAGGCATAA--GTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCC 258
                       ***     *    *         * *    *** *   *    *   * *   **    *

consensus_16136#2      GCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 253
consensus_16136#3      GCGAG---TCCGCGTCGTCGGCGGCGG-CGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 270
consensus_16136#0      GCGAGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 655
consensus_16136#1      TCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTA 318
                        *       *  * *  *  **  *   *    *  * * *  * **  *     *    

consensus_16136#2      CCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTG 313
consensus_16136#3      CCATCTCGGTCGCGTGCTTGGTNTGGT-CTCTCTCTCTCTCTCTC--------------- 314
consensus_16136#0      CCATCTCGGTCGCGTGCTTGGTTTGGT------TCTCTCTCTCTCTCTTTTCTCGCCTTG 709
consensus_16136#1      ACACAAAGGTCG---GCATGGCCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGT 375
                        **    *****   ** ***  *           *  *** *                 

consensus_16136#2      CTCCTNCNTTCTTCGCGTGAGCGCAAGCAACAACTCTTC--------------------- 352
consensus_16136#3      ------------------------------------------------------------
consensus_16136#0      CTCCTCTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT----------------- 752
consensus_16136#1      CGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGG 435
                                                                                   

consensus_16136#2      ------------
consensus_16136#3      ------------
consensus_16136#0      ------------
consensus_16136#1      CTCGATGAAGCG 447
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)