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Oryza sativa
cluster # 16137 cluster # 16137       Sequences # 28       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16137#0 length = 927 sequences # 25  
consensus_16137#1 length = 530 sequences # 3  

consensusID : consensus_16137#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 25
consensus length = 927
fasta sequence
                              [CTGAAGGAGTAAAAAACTCCATTCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG-AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC-GTGTTAC-TGTCAAGAAGAGCAAGAA-TATCC-TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA-TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG-AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC-TCGAAGCC-GGAGGCGTCGACAGCAGCCCAGGAAGATGATGAGGCCGTCGACGAGACTGGTGTCGAG-CCGAAGGACATCGAGCTGGTGATGACCCAGGCCA-CCGTGTCGAGGTC-CAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGC-GACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATT-CCGT-TTCCATT-CTACCTC-ATCTAGATGGGGGGTTTACATGT-GTTGAGATGTTTGCTTTGTCGTTTGT-GCGCACCAT-T-GTTATT-ATCATGAGCAGTCTTGGGAC-GAT-GTAAGGATAATCTATTGAATGTCTT-GAGTAAGATGGGGGCTTACTGCC-TTTTCCTGCAAAAAAAAAAAAAAAAAAAAGAAAAAA]

[+] EMBL CF292883             [CTGAAGGAGTAAAAAACTCCATTCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF317212             [                      TCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGGNAGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAACCCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF296845             [                      TCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAN AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGGAGCGTCGACAGCAGCCCAG                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF308156             [                      TCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAANTATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTG AGNAGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCCGGGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK058906             [                       CGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF293854             [                                  GGTTTTTTCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGATGAGGAGCTCCGCGCCCAGATCGGGGAGCAGAAGCTCAACGAGGGAGATTTTCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGGTGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTNTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OS2044A              [                                         CCCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAANCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCCNGTGTTAC TGTCAAGAAGNGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU172974             [                                          CCTTGCTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU069043             [                                               CTCGTCTGCGCCGCCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCCTTTTTTGTCATCTCC AACCNGATGTCTTCAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA753515             [                                                   TCTGCGCCGCCACCTCCTCCACCTCCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGAGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCGTCGACAGCAGGCCAGGAAGATGATGAGGCCGTCGACGAGACTGGTGTTGAGCCCGAA GACATCNAGCTGGTGATGACCCANGCCA CCGTG                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS4881A             [                                                   TCTGCGCCGNCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTACTTGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGTTGTCTTCAAGAGCCCTACATCCGACACCTATTGTNATTTTTTGCGAGGCCAAGATCGAGGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AB110178             [                                                                                     TCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BP184579             [                                                                                     TCCCAACCATGACGGCGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BP184894             [                                                                                                 acgaGGCCGAGATCGGGAAGCAGGAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA999966             [                                                                                                                                                              CAACGAGGGAGATGAGCCAGTCGTTGTTGAAGACTTCGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAT AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA999730             [                                                                                                                                                               AACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB000690             [                                                                                                                                                               AACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA999121             [                                                                                                                                                               AACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACATCCGACACCTA TGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGACCCAGGCTGCAG AGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA999658             [                                                                                                                                                               AACGAGGGAGATGAGCCAGTCGTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGATGATGCGG AGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGCAGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCC GTGTTAC TGTCAAGAAGAGCAAGAA TATCC TTTTTGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI801588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCAGA CCAGGCTCCAG A CAGTTCAA GCCCCGGATCTGA CAGCATGCTCTTCGAA CC GGAGGCGTCGACA CAGCCCAGGAAGATGATGA GCCGTCGACGAGACTGGTGTTGA  CCGAAGGACATCGA CTGGTGATGACCCAGGCCA CCGTGTCGAGGTC CAA GCGGTGAA GCACTCAAGGCT CCAATGGC GACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATT CCGT TTCCATT CTACCTC ATCTAGATGGGGGGTTTACATGT GTTGAGATGTCTGCTTTGTCGTTTGT GCGCACCAT T GTTATT ATTATGAGCAGTCTTGGGAC GAT GTAAGGATAATCTATTGAATGTCTT GAGTAAGATGGGGGCTTACTGCC TTTTCCTGCAAAAAAAAAAAAAAAAAAAAGAAAAAA]
[-] EMBL CF293853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtTGCAG AGCAGTTCAAGGCGCCGGATTTGAGCAGCATGCTT TCGAAGCC GGAGGCGTCGACAGCAGCCCAGGAAGATGATGAGCCCGTCGACGAGACTGGTGTCGAG CCGAAGGACATCGAGCTGGTGATGACCCAGGCCC CCGTGTCGAGGTC CAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGC GACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATT CCGT TTCCATT CTCCCTC ATCTAGATGGGGGGTTTACATGT GTTGAGATGTTTGCTTTGTCGTTTGT GCGCCCCAT T GTTATT ATCATGAGCAGTCTTGGGAC GAT GTAAGGATAATCTATTGAATGTCTT GAGTAAGAT GGGGCTTACTGCC TTTTCCTGCAAAAAAAAAAAAAAAAA          ]
[-] EMBL CF292884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAAGGCGCCGGATCTGAGCAGCATGCTC TCGAAGCC GGAGGCGTCGACAGCAGCCCAGGAAGATGGTGAGGCCGTCGACGAGACTGGTGTCGAG CCGAAGGACATCGAGCTGGTGATGACCCAGGCCA CCGTGTCGAGGTC CAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGC GACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCAAATGATT CCGT TTCCATT AAAAATC ATCTAGATGGGGGGTTTACATGT GTTGAGATGTTTGCTTTGTCGTAAGT GCGCACCAT T GTTATT ATCATGAGCAGTCTTGGGAC GAT GTAAGGATAATCTATTGAATGTCTT GAGTAAGATGGGGGCTAACTGCC TTTTCCTGCAAAAAAAAAAAAAAAAAAcactg    ]
[-] EMBL CF296846             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGACTGGTGTCGAG CCGAAGGACATCGAGCTGGTGATGACCCAGGCCA CCGTGTCGAGGTC CAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGC GACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATT CCGT TTCCATT CTACCTC ATCTAGACGGGGGGTTTACATGT GTTGAGATGTTTGCTTTGTCGTTTGT GCGCACCAT T GTTATT ATCATGAGCAGTCTTGGGAC GAT GTAAGGATAATCTATTGAATGTCTT GAGTAAGATGGGGGCTTACTGCC TTTTCCTGCAAAAAA                     ]
[+] EMBL BI805904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGACCCAGGCCACCCGTGTCGAGGTCACAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCTGATATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTGCCGTGTTCCNTTGCTACCTCTATCTAGATGGGGGGTTTACATGTGGTTGAGATGTTTGCTTTGTCGTTTGTGGCGCACCATGTGGTTATTGATCATGANCAGTCTTGGGACAGATGGTAAGGATAATCTATTGAATGTCTTGGAGTAAGATGGGGGCTTACTNCCATTTTCCTGCCAAAAAAAAAA                ]
[+] EMBL AU197594             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTTTGTCGTTTGT GCGCACCAT T GTTATT ATCATGAGCAGTCTTGGGAC GAT GTAAGGATAATCTATTGAATGTCTT GAGTAAGATGGGGGCTTACTGCC TTTTCCTGCAAAAAAA                    ]


>consensus_16137#0 CTGAAGGAGTAAAAAACTCCATTCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCG CCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAG GAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTC GTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGAT GATGCGGAGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGC AGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCCGTGTTACTGTC AAGAAGAGCAAGAATATCCTTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACA TCCGACACCTATGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAG ACCCAGGCTGCAGAGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTCTCGAAGCCGGAG GCGTCGACAGCAGCCCAGGAAGATGATGAGGCCGTCGACGAGACTGGTGTCGAGCCGAAG GACATCGAGCTGGTGATGACCCAGGCCACCGTGTCGAGGTCCAAGGCGGTGAAGGCACTC AAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCG CGTTCGATCATTTGATTCCGTTTCCATTCTACCTCATCTAGATGGGGGGTTTACATGTGT TGAGATGTTTGCTTTGTCGTTTGTGCGCACCATTGTTATTATCATGAGCAGTCTTGGGAC GATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGC AAAAAAAAAAAAAAAAAAAAGAAAAAA



consensusID : consensus_16137#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 530
fasta sequence
                              [AGCCCAAGATCGAGACCTGAGCTCCAGCTGCAGACCCAGGCTCCAGACAGTTCAAGGCGCCGGA-TCTGA--CAGCA-TGCTCTCGAAGCCGGAGGCGTCGACA-CAGCCCAGGAAG-ATGATGAGCCCGTCGACGAGA-CTGGTGTTGAGCCGAAGGACATCGAG-CTGGTGATGA-CCCAGGCCA-CCGTGTCGAGGTCCAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTCCGTTTCCA-TTCTACCT-ATCTAGATGGGGGGTTTACA-TGTGTTG-AGATGTCTGCTTTG-TCGTTTGTGCGCACCA-TTGTTATTATTATGAG-CAGTCTTGGGA-CGATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGCACTTGGACAATGTCAGTTGGCTTGAAATGCTTGA-TAGT-GAAGTGAATATACCTGACACCCAAAAATTCGGCAAAAAAAAAA]

[+] EMBL BI803916             [AGCCCAAGATCGAGACCTGAGCTCCAGCTGCAGACCCAGGCTCCAGACAGTTCAAGGCGCCGGA TCTGA  CAGCA TGCTCTCGAAGCCGGAGGCGTCGACA CAGCCCAGGAAG ATGATGAGCCCGTCGACGAGA CTGGTGTTGAGCCGAAGGACATCGAG CTGGTGATGA CCCAGGCCA CCGTGTCGAGGTCCAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTCCGTTTCCA TTCTACCT ATCTAGATGGGGGGTTTACA TGTGTTG AGATGTCTGCTTTG TCGTTTGTGCGCACCA TTGTTATTATTATGAG CAGTCTTGGGA CGATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGCACTTGGACAATGTCAGTTGGCTTGAAATGCTTGA TAGT GAAGTGAATATACCTGACACCCAAAAA                ]
[+] EMBL BI803031             [                                                          cCCGGATTCTGACCCAGCAGTGCTCTCGAACCCGGAGGCGTCGACAGCAGCCCAGGAAGTATGATGAGCCCGTCGACGAGA CTGGTGTTGAGCCGAAGGACATCGAG CTGGTGATGA CCCAGGCCA CCGTGTCGAGGTCCAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTCCGTTTCCA TTCTACCTCATCTAGATGGGGGGTTTACA TGTGTTG AGATGTCTGCTTTC TCGTTTGTGCGCACCA TTGTTATTATTATGA  CAGTCTTGGGA CGATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGCACTTGGACCATGTCAGTTGGCTTGAAATGCTTGACCCCTCGAAGTGAATATACCTGACACCAAAAA                 ]
[+] EMBL BI799957             [                                                                                                                                      CGAGACCTGGTGTTGAGCCGAAGGACATCGAGCCTGGTGATGACCCCAGGCCACCCGTGTCGAGGTCCAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTCCGTTTCCACTTCTACCT CACTAGATGGGGGGTTTACACTGTGTTGAAGATGTCTGCTTTGCTCGTTTGTGCGCACCACTTGTTATTATTATGAGCCAGTCTTGGGACCGATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGCACTTGGACAATGTCAGTTGGCTTGAAATGCTTGA TAGT GAAGTGAATATACCTGACACCCCAACTTTCGGCAAAAAAAAAA]


>consensus_16137#1 AGCCCAAGATCGAGACCTGAGCTCCAGCTGCAGACCCAGGCTCCAGACAGTTCAAGGCGC CGGATCTGACAGCATGCTCTCGAAGCCGGAGGCGTCGACACAGCCCAGGAAGATGATGAG CCCGTCGACGAGACTGGTGTTGAGCCGAAGGACATCGAGCTGGTGATGACCCAGGCCACC GTGTCGAGGTCCAAGGCGGTGAAGGCACTCAAGGCTGCCAATGGCGACATCGTCACAGCC ATCATGGAACTCACAACTTAGCGAGATTCGCGTTCGATCATTTGATTCCGTTTCCATTCT ACCTATCTAGATGGGGGGTTTACATGTGTTGAGATGTCTGCTTTGTCGTTTGTGCGCACC ATTGTTATTATTATGAGCAGTCTTGGGACGATGTAAGGATAATCTATTGAATGTCTTGAG TAAGATGGGGGCTTACTGCCTTTTCCTGCACTTGGACAATGTCAGTTGGCTTGAAATGCT TGATAGTGAAGTGAATATACCTGACACCCAAAAATTCGGCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16137#0      CTGAAGGAGTAAAAAACTCCATTCGCTGCTCTAGGGTTTTTCCCTTGCTCGTCTGCGCCG 60
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      CCACCTCCTCCACCTTCTCTTCCCCTCCCAACCATGACGGCGGCCGAGATCGGGAAGCAG 120
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      GAGGAGGAGCTCCGCGCCCAGATCGAGGAGCAGAAGCTCAACGAGGGAGATGAGCCAGTC 180
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      GTTGTTGAAGATGACGATGACGATGAAGATGATGACGACGAGGATGACAAAGATGACGAT 240
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      GATGCGGAGGGAGGTGATGCAAGTGGAAGATCTAAGCAGAGTCGTAGTGAGAAAAAAAGC 300
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      AGGAAGGCCATGGTGAAGCTTGGCATGAAGTCTATCACTGGTGTGAGCCGTGTTACTGTC 360
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      AAGAAGAGCAAGAATATCCTTTTTGTCATCTCCAAACCGGATGTCTTCAAGAGCCCTACA 420
consensus_16137#1      ------------------------------------------------------------
                                                                                   

consensus_16137#0      TCCGACACCTATGTCATTTTTGGCGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAG 480
consensus_16137#1      -------------------------AGCCCAAGATCGAG-ACCTGAGCTC-CAGCTGCAG 33
                                                ** *********** ********** *********

consensus_16137#0      ACCCAGGCTGCAGAGCAGTTCAAGGCGCCGGATCTGAGCAGCATGCTCTCGAAGCCGGAG 540
consensus_16137#1      ACCCAGGCTCCAGA-CAGTTCAAGGCGCCGGATCTGA-CAGCATGCTCTCGAAGCCGGAG 91
                       ********* **** ********************** **********************

consensus_16137#0      GCGTCGACAGCAGCCCAGGAAGATGATGAGGCCGTCGACGAGACTGGTGTCGAGCCGAAG 600
consensus_16137#1      GCGTCGACA-CAGCCCAGGAAGATGATGAGCCCGTCGACGAGACTGGTGTTGAGCCGAAG 150
                       ********* ******************** ******************* *********

consensus_16137#0      GACATCGAGCTGGTGATGACCCAGGCCACCGTGTCGAGGTCCAAGGCGGTGAAGGCACTC 660
consensus_16137#1      GACATCGAGCTGGTGATGACCCAGGCCACCGTGTCGAGGTCCAAGGCGGTGAAGGCACTC 210
                       ************************************************************

consensus_16137#0      AAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCG 720
consensus_16137#1      AAGGCTGCCAATGGCGACATCGTCACAGCCATCATGGAACTCACAACTTAGCGAGATTCG 270
                       ************************************************************

consensus_16137#0      CGTTCGATCATTTGATTCCGTTTCCATTCTACCTCATCTAGATGGGGGGTTTACATGTGT 780
consensus_16137#1      CGTTCGATCATTTGATTCCGTTTCCATTCTACCT-ATCTAGATGGGGGGTTTACATGTGT 329
                       ********************************** *************************

consensus_16137#0      TGAGATGTTTGCTTTGTCGTTTGTGCGCACCATTGTTATTATCATGAGCAGTCTTGGGAC 840
consensus_16137#1      TGAGATGTCTGCTTTGTCGTTTGTGCGCACCATTGTTATTATTATGAGCAGTCTTGGGAC 389
                       ******** ********************************* *****************

consensus_16137#0      GATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGC 900
consensus_16137#1      GATGTAAGGATAATCTATTGAATGTCTTGAGTAAGATGGGGGCTTACTGCCTTTTCCTGC 449
                       ************************************************************

consensus_16137#0      AAAAAAAAAAAAAAAAAAAAGAAAAAA--------------------------------- 927
consensus_16137#1      ACTTGGACAATGTCAGTTGGCTTGAAATGCTTGATAGTGAAGTGAATATACCTGACACCC 509
                       *     * **    *         ***                                 

consensus_16137#0      ---------------------
consensus_16137#1      AAAAATTCGGCAAAAAAAAAA 530
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)