These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1327 fasta sequence [CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT] [+] EMBL AK119907 [CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT] consensusID : consensus_1616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT] [+] EMBL CA758436 [GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1616#0 CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACC 60 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 GCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGG 120 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 CGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGC 180 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 AGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGG 240 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 CAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 300 consensus_1616#1 --------------------GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 40 **************************************** consensus_1616#0 TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 360 consensus_1616#1 TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 100 ************************************************************ consensus_1616#0 ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 420 consensus_1616#1 ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 160 ************************************************************ consensus_1616#0 CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 480 consensus_1616#1 CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 220 ************************************************************ consensus_1616#0 GGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCC 540 consensus_1616#1 GGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTC 280 *********************** ***** ***** ***** ** ******* * * consensus_1616#0 GGAC-GGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGC 599 consensus_1616#1 GTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGA 340 * ** ***** * ** ** ** ******* ** ****** * * ** *** consensus_1616#0 CATCTGCCCCGGCG-CCGGTGTTTGAC-CGGTCGGCGATCGTGCACCCCATGGCCGCTGC 657 consensus_1616#1 CGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATC---TGTCTCCTGC 397 * ****** * ** *** * *** * * * ** * *** * ** * **** consensus_1616#0 CATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAAT 717 consensus_1616#1 CCTGATATAGGGTCCTTTCCGCTGAGTT---TATAGGCCAACACTGGCCTGGCACATGCT 454 * ** ** * **** *** ** * ***** * * * consensus_1616#0 TTGTAGCTCCTCACTGCGAATTTGTT-GAGGCGAACATGGCAACACCACGAC--ACGACT 774 consensus_1616#1 TTGTGGGAC---ACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGAT 511 **** * * ** *** * ** * * * * * *** * ** * * consensus_1616#0 ACGCTAGAGCT--CGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCG 832 consensus_1616#1 ATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAA----AAGATCGAACTGG 567 * ** * ** *** * * * ** * * ** * * ** ** * consensus_1616#0 ACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAG 892 consensus_1616#1 ACT-GGCTATTATNCTTCCTGGACTCATCTATAAGTC-----CCAAAGCTTCAATGGAGT 621 ** *** * * ** ** * * * * ** ** * consensus_1616#0 ATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCA 952 consensus_1616#1 GTCAGTAGAT-------------------------------------------------- 631 ** * * consensus_1616#0 AGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGA 1012 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 GAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTG 1072 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 ATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTG 1132 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 AGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTT 1192 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 CGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTA 1252 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 TTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAA 1312 consensus_1616#1 ------------------------------------------------------------ consensus_1616#0 TGAGAGAGTATGCGT 1327 consensus_1616#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||