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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1327 fasta sequence
[CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT]
[+] EMBL AK119907 [CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT]
consensusID : consensus_1616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT]
[+] EMBL CA758436 [GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1616#0 CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACC 60
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 GCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGG 120
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 CGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGC 180
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 AGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGG 240
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 CAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 300
consensus_1616#1 --------------------GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 40
****************************************
consensus_1616#0 TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 360
consensus_1616#1 TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 100
************************************************************
consensus_1616#0 ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 420
consensus_1616#1 ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 160
************************************************************
consensus_1616#0 CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 480
consensus_1616#1 CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 220
************************************************************
consensus_1616#0 GGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCC 540
consensus_1616#1 GGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTC 280
*********************** ***** ***** ***** ** ******* * *
consensus_1616#0 GGAC-GGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGC 599
consensus_1616#1 GTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGA 340
* ** ***** * ** ** ** ******* ** ****** * * ** ***
consensus_1616#0 CATCTGCCCCGGCG-CCGGTGTTTGAC-CGGTCGGCGATCGTGCACCCCATGGCCGCTGC 657
consensus_1616#1 CGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATC---TGTCTCCTGC 397
* ****** * ** *** * *** * * * ** * *** * ** * ****
consensus_1616#0 CATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAAT 717
consensus_1616#1 CCTGATATAGGGTCCTTTCCGCTGAGTT---TATAGGCCAACACTGGCCTGGCACATGCT 454
* ** ** * **** *** ** * ***** * * *
consensus_1616#0 TTGTAGCTCCTCACTGCGAATTTGTT-GAGGCGAACATGGCAACACCACGAC--ACGACT 774
consensus_1616#1 TTGTGGGAC---ACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGAT 511
**** * * ** *** * ** * * * * * *** * ** * *
consensus_1616#0 ACGCTAGAGCT--CGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCG 832
consensus_1616#1 ATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAA----AAGATCGAACTGG 567
* ** * ** *** * * * ** * * ** * * ** ** *
consensus_1616#0 ACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAG 892
consensus_1616#1 ACT-GGCTATTATNCTTCCTGGACTCATCTATAAGTC-----CCAAAGCTTCAATGGAGT 621
** *** * * ** ** * * * * ** ** *
consensus_1616#0 ATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCA 952
consensus_1616#1 GTCAGTAGAT-------------------------------------------------- 631
** * *
consensus_1616#0 AGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGA 1012
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 GAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTG 1072
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 ATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTG 1132
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 AGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTT 1192
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 CGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTA 1252
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 TTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAA 1312
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 TGAGAGAGTATGCGT 1327
consensus_1616#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||