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Oryza sativa
cluster # 1616 cluster # 1616       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1616#0 length = 1327 sequences # 1  
consensus_1616#1 length = 631 sequences # 1  

consensusID : consensus_1616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1327
fasta sequence
                              [CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT]

[+] EMBL AK119907             [CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACCGCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGGCGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGCAGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGGCAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTGTAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAGTATGCGT]


>consensus_1616#0 CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACC GCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGG CGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGC AGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGG CAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA GGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCC GGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGCC ATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCAT GGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAATTTG TAGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAACACCACGACACGACTACGCTA GAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCGACGAGGCC ACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAGATCGGCGG CGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCAAGCCGTGC CCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGG GGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTGATTGGATT TCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTCAGGG TAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGG TGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTC TTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAATGAGAGAG TATGCGT



consensusID : consensus_1616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence
                              [GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT]

[+] EMBL CA758436             [GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCTGAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAAGTCCCAAAGCTTCAATGGAGTGTCAGTAGAT]


>consensus_1616#1 GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGCTCACGTACGTCCCCTCTACC GGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGGACGGGGCGACAGCGACGCGC GGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTTCTTGCGGCTCGTGCCCAGCC TGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGCG GCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTCGTACAGGCCATATCTAATGT CGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGACGACTGCCCTGTCGACCGAC GCATGAAATGAACTGTGACTGAGCATCTGTCTCCTGCCCTGATATAGGGTCCTTTCCGCT GAGTTTATAGGCCAACACTGGCCTGGCACATGCTTTGTGGGACACATCGACCTCATTTGC TTCAGAGCCAGTAGCACTGCAACCGGCAGATATGCAAAGGCCAACGAATGTCTTTGTATT TGCATGCCCTTTAAAAGATCGAACTGGACTGGCTATTATNCTTCCTGGACTCATCTATAA GTCCCAAAGCTTCAATGGAGTGTCAGTAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1616#0      CGGCGGCAGTGGCGCTCTCCAGGGCGGGCGGGGGAAGCGGCGGCGTCCAGGGCGGCGACC 60
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      GCGCCCTCCAGGGCGGATGGGGGAAGCGACGGCTTCCAGGGCGGGCGGGGGAAGCGGTGG 120
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      CGGTGACGGCGCCCTCCAGGTCGGGCGGGGGCAGCGGCGGTGGCGGCGGCGGCGCCCTGC 180
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      AGGGCGGGCGGGGGAAGCGGCAGCGGCGACGGAGCCCTCTAGGACAGGTGGGCAAAGCGG 240
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      CAGGGGCAACGGCGGCGGTCGCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 300
consensus_1616#1      --------------------GCTGACGCCGTCGCGGTCTTCTTCCCCCTCGTCGGGAAGC 40
                                          ****************************************

consensus_1616#0      TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 360
consensus_1616#1      TCACGTACGTCCCCTCTACCGGCGACGTCGTCGTTGACTGCTCGCCATCTGCCGTTGGGG 100
                      ************************************************************

consensus_1616#0      ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 420
consensus_1616#1      ACGGGGCGACAGCGACGCGCGGGCGCTGTCAGCCGCCGAGAGGCACGATGTCCCGGCGTT 160
                      ************************************************************

consensus_1616#0      CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 480
consensus_1616#1      CTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCA 220
                      ************************************************************

consensus_1616#0      GGTGACGCGGTTCGTCGGCGGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCC 540
consensus_1616#1      GGTGACGCGGTTCGTCGGCGGCGTTTACGGGTGCGGCTCTGCCGAGCCCCACGCCGCGTC 280
                      ***********************   ***** *****  ***** **  ******* * *

consensus_1616#0      GGAC-GGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTCTGCGCCGGCCCTCGGCCGGC 599
consensus_1616#1      GTACAGGCCATATCTAATGTCGTAATGTGGACGCTCGGACTGCGCAGAAGATAGGGCGGA 340
                      * ** ***** * **  ** **     *******  ** ****** *    * ** *** 

consensus_1616#0      CATCTGCCCCGGCG-CCGGTGTTTGAC-CGGTCGGCGATCGTGCACCCCATGGCCGCTGC 657
consensus_1616#1      CGACTGCCCTGTCGACCGACGCATGAAATGAACTGTGACTGAGCATC---TGTCTCCTGC 397
                      *  ****** * ** ***  *  ***   *  * * **  * *** *   ** *  ****

consensus_1616#0      CATGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGATTTTCATCGAAAT 717
consensus_1616#1      CCTGATATAGGGTCCTTTCCGCTGAGTT---TATAGGCCAACACTGGCCTGGCACATGCT 454
                      * **    ** *     ****   ***         ** * *****   *    *    *

consensus_1616#0      TTGTAGCTCCTCACTGCGAATTTGTT-GAGGCGAACATGGCAACACCACGAC--ACGACT 774
consensus_1616#1      TTGTGGGAC---ACATCGACCTCATTTGCTTCAGAGCCAGTAGCACTGCAACCGGCAGAT 511
                      **** *  *   **  ***  *  ** *   *  *    * * ***  * **   *   *

consensus_1616#0      ACGCTAGAGCT--CGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGGAGCTCG 832
consensus_1616#1      ATGCAAAGGCCAACGAATGTCTTTGTATTTGCATGCCCTTTAA----AAGATCGAACTGG 567
                      * ** *  **   ***  * *   * **   *     *   **    *   * ** ** *

consensus_1616#0      ACGAGGCCACCACATCCCCCGGGCGGGTGCGGGGAGCAGCGGCGGCGGCCGCAGCGACAG 892
consensus_1616#1      ACT-GGCTATTATNCTTCCTGGACTCATCTATAAGTC-----CCAAAGCTTCAATGGAGT 621
                      **  *** *  *     ** ** *   *        *     *    **  **  *    

consensus_1616#0      ATCGGCGGCGTCCCCCCGATTCCCCCTCCCATCCGCGCCCACCGTCGGCCAGAGCCACCA 952
consensus_1616#1      GTCAGTAGAT-------------------------------------------------- 631
                       ** *  *                                                    

consensus_1616#0      AGCCGTGCCCGCAGCTGCTCGCCCATTGACGCCTAACACCAACGTCAGAGAAGTGACAGA 1012
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      GAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATTTTATTTTATTTTGCTG 1072
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      ATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTG 1132
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      AGTCAGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTT 1192
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      CGGGGGGGTGGAGGGGGGGGCAATTCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTA 1252
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      TTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGATTTGTTTTTTATGGAA 1312
consensus_1616#1      ------------------------------------------------------------
                                                                                  

consensus_1616#0      TGAGAGAGTATGCGT 1327
consensus_1616#1      ---------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)