These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 27 consensus length = 1468 fasta sequence [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC-GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG-ATGAGGATCCAG-AGG-CAATGG--TTA--TTGA-TCACA--TT-AATTATGC--TG-CCA-CTG--AT-GCTG--AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA-TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG-GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT-GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC-TGCGTCGTTTTCAACAATGGGAG-CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA-CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT-CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA-ATAGAATCATAACAACATAAGCAATTCGGTGAA] [+] EMBL AK059111 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGTATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAATCATAACAACATAAG ] [+] EMBL AK099319 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAGTTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGCACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCC ] [+] EMBL CB626008 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCANGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACT ] [+] EMBL AU096734 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACNCCAAGCTCTCACNCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCC ] [+] EMBL AF074379 [ TCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTCGGGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTGAATGAGGATCCAGAAGGCCAATGGGTTTAATTTGATTCACAATTTAAATTATGCCTTGCCCACCTGGAATGGCTGGAAAGGgttgaatt ] [+] EMBL AU063380 [ nTCCTCTTCGCCCCCTCCACNCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGNCATGCGGTTAATCCATCTNACAGCTTGGTCCTGAAAGTCTTATCCGCCTCNCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTT CCCTCCATCT TTACAAGGTCGGCTATATAATTGG TTCTG TATGCA GNAAG AACAATGCTCGGGc ] [+] EMBL CF304154 [ CAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGG ] [+] EMBL CF323824 [ GATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAG ] [+] EMBL CA998282 [ TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACAC ] [+] EMBL CF324849 [ A TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGGNGGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGGACAG ] [+] EMBL CF322881 [ TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCGTATG ] [+] EMBL CA999716 [ ACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGA ] [+] EMBL CB000642 [ CATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGC ] [+] EMBL CA999345 [ CATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTA ] [+] EMBL OSS3087A [ TGCGGTTAATCCATCTAACAGCTTGGTNCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACATAACCAAGCAAATGGG ] [+] EMBL OSS4019A [ TGCGGTTAATCCATCTAACAGCTTGGTNNTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGNTCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAATTTTGTGACAG AACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTTAAGGCAGTTAATGTCAAGCAT ] [+] EMBL CA762689 [ GTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGAC ] [+] EMBL CA762690 [ GTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGAC ] [-] EMBL CB626009 [ AAAGTCTAAGTGGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTG ] [+] EMBL CF303802 [ TGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTATNGGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCNTGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCT ] [-] EMBL CB651081 [ CAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAGATAGAATCATAACAACATAAGCAATTCGGTGAA] [+] EMBL CB621659 [ AAACGCTTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ] [-] EMBL CB621660 [ AAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATTTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATTTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAAT ] [+] EMBL CA305854 [ TTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACCGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAATCATAAC ] [-] EMBL AU077999 [ ATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAGTCCTTCTTCATCTTCTCATTTGAGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAAT ] [+] EMBL AU161286 [ CTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCNCCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ] [+] EMBL AK058399 [ CAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ] consensusID : consensus_16182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTGGGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCAAAAAAAAAAAAAAA] [+] EMBL AU096735 [GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTGGGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCAAAAAAAAAAAAAAA] consensusID : consensus_16182#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGAAT] [-] EMBL AU077998 [CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16182#0 GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCC 60 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 GCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCC 120 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTC 180 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTCGGCCTCTGATC 240 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTGATGAGGATCCAGAGGCAATGG 300 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TTATTGATCACATTAATTATGCTGCCACTGATGCTGAAGGTGATCATACTTTGATTGCTG 360 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 GTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTAT 420 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTAT 480 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 CCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTC 540 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCT 600 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 TGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGG 660 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 CCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAATTTGTGACAGAAACAAGCA 720 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ------------------------------------------------------------ consensus_16182#0 AATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTG 780 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ---------------GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTG 45 consensus_16182#0 GGGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGA 840 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 GGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAG 105 consensus_16182#0 TCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGT 900 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 ATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNG 165 consensus_16182#0 TTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTT 960 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 TTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTT 225 consensus_16182#0 CAACATCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCAAAGTTGAGTACCAGA 1020 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 TCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAG 285 consensus_16182#0 GGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATA 1080 consensus_16182#2 ------------------------------------------------------------ consensus_16182#1 AGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATA 345 consensus_16182#0 ATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 1140 consensus_16182#2 ------------------------CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 36 consensus_16182#1 ATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 405 ************************************ consensus_16182#0 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 1200 consensus_16182#2 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 96 consensus_16182#1 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 465 ************************************************************ consensus_16182#0 GAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACC 1260 consensus_16182#2 GAGCACGAGTTACCTGAGGCTGATG------------------------------AAACC 126 consensus_16182#1 GAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACC 525 ************************* ***** consensus_16182#0 CAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTT 1320 consensus_16182#2 CAGTGTTGGGGGTTCCAAGTTCATAGAACC------------------------------ 156 consensus_16182#1 CAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTT 585 ****************************** consensus_16182#0 TGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 1380 consensus_16182#2 -GACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 215 consensus_16182#1 TGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 645 *********************************************************** consensus_16182#0 TCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGA 1440 consensus_16182#2 TCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGA 275 consensus_16182#1 AAAAAAAAAAAAAA---------------------------------------------- 659 consensus_16182#0 ATCATAACAACATAAGCAATTCGGTGAA 1468 consensus_16182#2 AT-------------------------- 277 consensus_16182#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||