|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence
[GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCACGCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGTCAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGACTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGTCAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAATGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGCGGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGACTACCTCCTCGGCGTCGCCGAGGCGTTCGTCCGCGAGCTGCACGCGCTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACCGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTCAACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGGATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTACGGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTACATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTCTGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAACACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAGTTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTCATGATTTCTTCTTAAAAAAATATTTAGAGGGATGTCTCTCCCTTCAAATCTTGTTTGTTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCATTGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC]
[+] EMBL AK108567 [GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCACGCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGTCAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGACTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGTCAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAATGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGCGGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGACTACCTCCTCGGCGTCGCCGAGGCGTTCGTCCGCGAGCTGCACGCGCTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACCGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTCAACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGGATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTACGGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTACATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTCTGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAACACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAGTTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTCATGATTTCTTCTTAAAAAAATATTTAGAGGGATGTCTCTCCCTTCAAATCTTGTTTGTTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCATTGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC]
consensusID : consensus_1619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence
[AAAACGATAGCTAGCTTAGCTACATTTTCATGGTGTTCTTAGGTGACATCACACATGACATCCATGGAGTAATTTTGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGCAACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGACTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCGCTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTCAACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATGATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAACGTAGGCAACAGCACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGGTAGGATGAGGTCGGCGGGGTGCTCCCACAGTCCCACTACAACTGCATCGCTTCGGTGCCCGGACCCGTCCTGCTCAGTCGCCGGCGGAGGCGAGCGCGGCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAGACGGTGCTGGAGAACGGCCACCGGAGGCCGAGGCAAGGGGGAAGCGGCGGCGGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAGCCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGCTGTCCGCATCTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA]
[-] EMBL AK062544 [AAAACGATAGCTAGCTTAGCTACATTTTCATGGTGTTCTTAGGTGACATCACACATGACATCCATGGAGTAATTTTGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGCAACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGACTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCGCTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTCAACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATGATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAACGTAGGCAACAGCACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGGTAGGATGAGGTCGGCGGGGTGCTCCCACAGTCCCACTACAACTGCATCGCTTCGGTGCCCGGACCCGTCCTGCTCAGTCGCCGGCGGAGGCGAGCGCGGCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAGACGGTGCTGGAGAACGGCCACCGGAGGCCGAGGCAAGGGGGAAGCGGCGGCGGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAGCCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGCTGTCCGCATCTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1619#0 GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCAC 60
consensus_1619#1 ------------------------------------------------------------
consensus_1619#0 GCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGT 120
consensus_1619#1 ------------------------------------------------------------
consensus_1619#0 CAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGA 180
consensus_1619#1 ------------------------------------------------------------
consensus_1619#0 CTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGT 240
consensus_1619#1 -----------------------------------------AAAACGATAGCTAGCTTAG 19
** * *
consensus_1619#0 CAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAA 300
consensus_1619#1 CTACATTTTCATGGTGTTCTTAGGTG---ACATCACACATGACATCCATGGA-GTAATTT 75
* **** ** * * ** * * ** * * * * ** *
consensus_1619#0 TGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGA 360
consensus_1619#1 TGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGA 135
** * ** ** * ************ ****************************
consensus_1619#0 GTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGC 420
consensus_1619#1 GTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGC------ 189
*************** * *********** ***********************
consensus_1619#0 GGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAA 480
consensus_1619#1 ---AACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAA 246
***************** **************************************
consensus_1619#0 CTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGA 540
consensus_1619#1 CTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGA 306
********** ********* *** ************** ********************
consensus_1619#0 CTACCTCCTCGGCGTCG--------CCGAGGCGT------TCGTCCGCGAGCTGCACGCG 586
consensus_1619#1 CTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCG 366
************* *** ***** *** ********************
consensus_1619#0 CTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAG 646
consensus_1619#1 CTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAG 426
***** ** ************** ************************************
consensus_1619#0 CGCGCCAC------CGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTC 700
consensus_1619#1 CGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTC 486
******** ************ ***** *** * *** ****** ** *******
consensus_1619#0 AACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGG 760
consensus_1619#1 AACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATG 546
**** ********************** ********* *********** ***** ** *
consensus_1619#0 ATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTAC 820
consensus_1619#1 ATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGC--------------CGGCGGCGTAC 592
********************* ** ********** ***********
consensus_1619#0 GGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTAC 880
consensus_1619#1 GGGGTGGAGAACGTAGGCAACAG-CACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCAC 651
************** * * * * * * **** * * ** **
consensus_1619#0 ATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTC 940
consensus_1619#1 CTGTGCCAT-CTGCTTCGACATGTTCGC-------CCCCGGTAGGATGAGGTCGGCGG-- 701
***** * * ** * *** * *** ** * ** ***
consensus_1619#0 TGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAAC 1000
consensus_1619#1 -GGTGCTCCCACAGTCCCACT--ACAACTGCATCGCTTCGGTGCCCGGACCC-GTCCTGC 757
** * ** * ***** ** ** ** *** * *** ** * *
consensus_1619#0 ACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAG 1060
consensus_1619#1 TCAGTCGCCGGCGGAGGCGAGCGCG-GCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAG 816
* * * ** * * ** *** * * *** * * **
consensus_1619#0 TTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTC 1120
consensus_1619#1 A-CGGTGCTGGAGAACGGCCACCGGAGGCCGAGGC--AAGGGGGAAGCGGCGGCGGCGGC 873
* *** * * * * * * * * * ** *
consensus_1619#0 ATGATTTCTTCTTAAAAAAATATTTAGA---GGGATGTCTCTCCCTTCAAATCTTGTTTG 1177
consensus_1619#1 GGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAG 933
** * ** ** * ** * * *
consensus_1619#0 TTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCAT 1237
consensus_1619#1 CCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGC-TGTCCGCAT 992
* * * * *** * * * ** ** * * * ***
consensus_1619#0 TGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC 1293
consensus_1619#1 CTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA--------------------- 1027
** *** * ** *** * *** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||