These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence [GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCACGCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGTCAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGACTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGTCAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAATGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGCGGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGACTACCTCCTCGGCGTCGCCGAGGCGTTCGTCCGCGAGCTGCACGCGCTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACCGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTCAACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGGATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTACGGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTACATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTCTGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAACACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAGTTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTCATGATTTCTTCTTAAAAAAATATTTAGAGGGATGTCTCTCCCTTCAAATCTTGTTTGTTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCATTGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC] [+] EMBL AK108567 [GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCACGCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGTCAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGACTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGTCAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAATGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGCGGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGACTACCTCCTCGGCGTCGCCGAGGCGTTCGTCCGCGAGCTGCACGCGCTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACCGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTCAACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGGATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTACGGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTACATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTCTGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAACACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAGTTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTCATGATTTCTTCTTAAAAAAATATTTAGAGGGATGTCTCTCCCTTCAAATCTTGTTTGTTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCATTGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC] consensusID : consensus_1619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence [AAAACGATAGCTAGCTTAGCTACATTTTCATGGTGTTCTTAGGTGACATCACACATGACATCCATGGAGTAATTTTGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGCAACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGACTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCGCTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTCAACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATGATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAACGTAGGCAACAGCACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGGTAGGATGAGGTCGGCGGGGTGCTCCCACAGTCCCACTACAACTGCATCGCTTCGGTGCCCGGACCCGTCCTGCTCAGTCGCCGGCGGAGGCGAGCGCGGCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAGACGGTGCTGGAGAACGGCCACCGGAGGCCGAGGCAAGGGGGAAGCGGCGGCGGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAGCCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGCTGTCCGCATCTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA] [-] EMBL AK062544 [AAAACGATAGCTAGCTTAGCTACATTTTCATGGTGTTCTTAGGTGACATCACACATGACATCCATGGAGTAATTTTGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGAGTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGCAACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAACTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGACTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCGCTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAGCGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTCAACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATGATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAACGTAGGCAACAGCACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGGTAGGATGAGGTCGGCGGGGTGCTCCCACAGTCCCACTACAACTGCATCGCTTCGGTGCCCGGACCCGTCCTGCTCAGTCGCCGGCGGAGGCGAGCGCGGCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAGACGGTGCTGGAGAACGGCCACCGGAGGCCGAGGCAAGGGGGAAGCGGCGGCGGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAGCCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGCTGTCCGCATCTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1619#0 GGCGATCATCGTGTTCGGCGACTCCACGGTCGACACGGGCAACAACAACTACCTCTCCAC 60 consensus_1619#1 ------------------------------------------------------------ consensus_1619#0 GCTCGTCAGGAGCGACTTCGCTCCCTACGGCCGCGACCTCCAGCTCGCCGGCGCCGGCGT 120 consensus_1619#1 ------------------------------------------------------------ consensus_1619#0 CAGCGGAGGCGGAAATGGCCGGCCCACCGGCAGGTTCTCCAATGGCCGCCTCGCCGTCGA 180 consensus_1619#1 ------------------------------------------------------------ consensus_1619#0 CTTCATCTCCGAGGCGTTCGGGCTGCCGCCGCTCGTCCCGGCCTACCTCGACCCGGCCGT 240 consensus_1619#1 -----------------------------------------AAAACGATAGCTAGCTTAG 19 ** * * consensus_1619#0 CAACATGAGCAGCCTCGGCGCCGGCGCCTGCTTCGCCTCCGCCGGCGCCGGCTACGACAA 300 consensus_1619#1 CTACATTTTCATGGTGTTCTTAGGTG---ACATCACACATGACATCCATGGA-GTAATTT 75 * **** ** * * ** * * ** * * * * ** * consensus_1619#0 TGCCACCTCCGATCTTTTCTCGGTGCTGCCGCTGTGGAAGGAGCTGGACTACTTCAAGGA 360 consensus_1619#1 TGTGAGGTCGCGTCGTGCATCGGTGCTGCCGATGTGGAAGGAGCTGGACTACTTCAAGGA 135 ** * ** ** * ************ **************************** consensus_1619#0 GTACGCGGCGAGGCTCCGGAGCTTCCGGGGAGACGACGACGCGGCGGCGGCGGCGGCGGC 420 consensus_1619#1 GTACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGC------ 189 *************** * *********** *********************** consensus_1619#0 GGCGACGCTGTCGGAGGCGCTGTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAA 480 consensus_1619#1 ---AACGCTGTCGGAGGCGCTCTACATCGTCAGCATGGGCACCAACGACTTCCTCGAGAA 246 ***************** ************************************** consensus_1619#0 CTACTACGCCGTGGCGCGCGGCCACGCGGCGGAGTACTCGACGGCGGCGGCGTACGGCGA 540 consensus_1619#1 CTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGCGGCGTACGGCGA 306 ********** ********* *** ************** ******************** consensus_1619#0 CTACCTCCTCGGCGTCG--------CCGAGGCGT------TCGTCCGCGAGCTGCACGCG 586 consensus_1619#1 CTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTACTCGTTCGTCCGCGAGCTGCACGCG 366 ************* *** ***** *** ******************** consensus_1619#0 CTCGGCGCACGCAAGGTCGACCTCAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAG 646 consensus_1619#1 CTCGGTGCCCGCAAGGTCGACCTTAACGGCCTCCCGCCCATGGGCTGCCTCCCGCTGGAG 426 ***** ** ************** ************************************ consensus_1619#0 CGCGCCAC------CGGCGGCGCGTGCACCGAGGAGTACAACGCCGTCGCCGGGCGCTTC 700 consensus_1619#1 CGCGCCACGGGGAGCGGCGGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTC 486 ******** ************ ***** *** * *** ****** ** ******* consensus_1619#0 AACGCCGGCCTCCAGGACATGATCGCGCGGCTCAACGGCGAGCTCGGCGGCGGCGCGAGG 760 consensus_1619#1 AACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGACGAGCTCGGCGACGGCGAGATG 546 **** ********************** ********* *********** ***** ** * consensus_1619#0 ATCGTGTACGGCGACGTGTACGGGGCGGTGGCCGCGGTGCTCGCCGACCCGGCGGCGTAC 820 consensus_1619#1 ATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGC--------------CGGCGGCGTAC 592 ********************* ** ********** *********** consensus_1619#0 GGGGTGGAGAACGTGAAGGCCGGGTGCTGCGGCGTGACGGGGGTGTTCGAGATGGGGTAC 880 consensus_1619#1 GGGGTGGAGAACGTAGGCAACAG-CACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCAC 651 ************** * * * * * * **** * * ** ** consensus_1619#0 ATGTGCGGCGCCGGCGCGCGGAGCCCGCTGACGTGCACCGACGCGAGCAAGTTCGCGTTC 940 consensus_1619#1 CTGTGCCAT-CTGCTTCGACATGTTCGC-------CCCCGGTAGGATGAGGTCGGCGG-- 701 ***** * * ** * *** * *** ** * ** *** consensus_1619#0 TGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGACGCCAAGATGAAC 1000 consensus_1619#1 -GGTGCTCCCACAGTCCCACT--ACAACTGCATCGCTTCGGTGCCCGGACCC-GTCCTGC 757 ** * ** * ***** ** ** ** *** * *** ** * * consensus_1619#0 ACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAG 1060 consensus_1619#1 TCAGTCGCCGGCGGAGGCGAGCGCG-GCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAG 816 * * * ** * * ** *** * * *** * * ** consensus_1619#0 TTCAGTGATAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTC 1120 consensus_1619#1 A-CGGTGCTGGAGAACGGCCACCGGAGGCCGAGGC--AAGGGGGAAGCGGCGGCGGCGGC 873 * *** * * * * * * * * * ** * consensus_1619#0 ATGATTTCTTCTTAAAAAAATATTTAGA---GGGATGTCTCTCCCTTCAAATCTTGTTTG 1177 consensus_1619#1 GGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAGGGCAGCGGCAG 933 ** * ** ** * ** * * * consensus_1619#0 TTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAGTATACCCAT 1237 consensus_1619#1 CCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGC-TGTCCGCAT 992 * * * * *** * * * ** ** * * * *** consensus_1619#0 TGAACACGATGATGACAATGATCAAATAGTAGACATATTAATGCAATATGCTAAAC 1293 consensus_1619#1 CTCCGCCGGTGAGAGGAGAGAGGAAAGGGGAGAGA--------------------- 1027 ** *** * ** *** * *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||