These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1115 fasta sequence [AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCACTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGAGGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTCCTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAGGAGGAGGAGTACACGTTCGAGGGGTTCGCGGACGAGCTGGTGGCGCTGATGGAGGAGATGGGGGTGAGCGGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCTGCATTGCCTCCATCAACCGCCCCGGCCTCTTCACCCACCTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACGCGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCATCGTCGGCGCCGCCGCCGACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTCTTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCGTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCATCGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACATCGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCCGGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGTCGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT] [+] EMBL AK066814 [AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCACTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGAGGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTCCTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAGGAGGAGGAGTACACGTTCGAGGGGTTCGCGGACGAGCTGGTGGCGCTGATGGAGGAGATGGGGGTGAGCGGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCTGCATTGCCTCCATCAACCGCCCCGGCCTCTTCACCCACCTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACGCGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCATCGTCGGCGCCGCCGCCGACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTCTTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCGTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCATCGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACATCGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCCGGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGTCGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT] consensusID : consensus_162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TACACATTTCGAGGGGTCCGGGACGACTGTGCGCTNATTGGAGGATATGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATGCCGCCATGATCGGCTCGCATTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACGCAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCATCGTCGGCAGCACGCCAGCCAGACAACCCCTCCCCGCGGAGACGCTGGCNCGGACCTTCTTCNCCATGGACCCGCGCGTGGCGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCAGTGCTGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAG] [-] EMBL BM422162 [TACACATTTCGAGGGGTCCGGGACGACTGTGCGCTNATTGGAGGATATGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATGCCGCCATGATCGGCTCGCATTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACGCAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCATCGTCGGCAGCACGCCAGCCAGACAACCCCTCCCCGCGGAGACGCTGGCNCGGACCTTCTTCNCCATGGACCCGCGCGTGGCGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCAGTGCTGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_162#0 AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCA 60 consensus_162#1 ------------------------------------------------------------ consensus_162#0 CTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGA 120 consensus_162#1 ------------------------------------------------------------ consensus_162#0 GGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTC 180 consensus_162#1 ------------------------------------------------------------ consensus_162#0 CTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAG 240 consensus_162#1 ------------------------------------------------------------ consensus_162#0 GAGGAGGAGTACACGTT-CGAGGGGTTCGCGGACGAGCTGGTGGCGCTGAT-GGAGGAGA 298 consensus_162#1 ---------TACACATTTCGAGGGGTCCG-GGACGA-CTGT--GCGCTNATTGGAGGATA 47 ***** ** ******** ** ****** *** ***** ** ****** * consensus_162#0 TGGGGGTGAGC--GGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCT-GCA 355 consensus_162#1 TGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATG-CCGCCATGATCGGCTCGCA 106 ******* * * *** ******** ***** ****** *** *********** *** consensus_162#0 TT-GCCTCCATCAACC--GCCCCGGCCTCTTCACCCAC---CTCGTGCTCGTCGGCGCCT 409 consensus_162#1 TTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCT 166 ** *********** * ************* **** ******************* consensus_162#0 CCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACG 469 consensus_162#1 CCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACG 226 *********************************************** ************ consensus_162#0 CGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCA 529 consensus_162#1 CAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCA 286 * *** ***************************** ******************** consensus_162#0 TCGTCGGCGCCGCC---GCC-GACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTC 585 consensus_162#1 TCGTCGGCAGCACGCCAGCCAGACAACCCCTCC-CCGCGGAGACGCTGGCNCGGACCTTC 345 ******** * * *** ************ **************** ********* consensus_162#0 TTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAAC 645 consensus_162#1 TTCNCCATGGACCCGCGCGTGGCG-ACGCGCTGGCGCGCATGATCTTCCTCGGCGACAAC 404 *** ******************** *********************************** consensus_162#0 CGCGGC-GTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCC 704 consensus_162#1 CGCGGCAGTGCTGG-CCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCC 463 ****** ******* ********************************************* consensus_162#0 CGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGT 764 consensus_162#1 CGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGT 523 ************************************************************ consensus_162#0 GACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGAT 824 consensus_162#1 GACCGTCGACTCGGCCG-CCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGAT 582 ***************** ****************************************** consensus_162#0 ACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCAT 884 consensus_162#1 ACTCGACGCTGTGCTCGCCGAGGAG----------------------------------- 607 ************************* consensus_162#0 CGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACAT 944 consensus_162#1 ------------------------------------------------------------ consensus_162#0 CGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCC 1004 consensus_162#1 ------------------------------------------------------------ consensus_162#0 GGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGT 1064 consensus_162#1 ------------------------------------------------------------ consensus_162#0 CGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT 1115 consensus_162#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||