|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1117 fasta sequence
[AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT-GGGGAGTTCAGT-GATTTCCA-GGAGATTTTGCGCTA-TTT-GGAT-GAATTAACCCTGT-CCGAT-CATATGT-GGGATGATGGAAACT-CC-TTGGGTCCCAAGGAGGT-CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA-CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC-TGAA-T-GGCGCGA-GGA-CATGACA-TTTGAGGAAGC-TGTCAAGCTT-G-TTGA-GAAGTGC-TTGC-TTGTCCTGC-TGTACCGTGA-CCGATCATC-TA-TTAACA-AGTTCCAGA-TTGCCAAGAT-CACAACTGA-GGGA-GCGACCA-TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT-CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB026568 [AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACATTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAAAAAAAAAA ]
[+] EMBL OS1253A [AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCNAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTNACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGNGCGTGGAGCGNATT ]
[+] EMBL AK071380 [ GATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTG ]
[+] EMBL AU165944 [ CGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCA TATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGTGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAANT GGGGAGTTCAGTGGATTTCCAGGGAGATTTTGCGCTA TTTGGGATGGAATTAACCCTGT CCGAT CATATGTGGGGATGATGGAAACT CC TTGGGTCCCAANGAGGT CCATAGCTACC ]
[+] EMBL AU068925 [ CCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CA ]
[+] EMBL AK103975 [ GAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGC ]
[+] EMBL CF326425 [ CAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TG ]
[+] EMBL C74209 [ AACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGANGACGCA TATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGA CNCATTAANGCTGTTGGTAAGCATAGCCTTATTGGAGCNAGT TGGGAGTTCAGT GATTTCCA NGAGA TTTGCGC A ATT GGAT GAA TAA CCTGT CCG T CATATGT GGGATGA ]
[+] EMBL CA753134 [ TAAATCCCTCG GAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAA GGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCANAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATGGGTACACACTTTGAAGAAAA CACATTG CA CTGGGTTTGGGAA CATATGGCAATCCC ATACTcg ]
[+] EMBL AU068248 [ TCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGG ]
[+] EMBL AU163324 [ AGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGGAGTTCAGT GATTTCCA GGAGATTTTTCGCTATTTT GGAT GAATTAACCCTGTCCCGATCCATATGTGGGGATGATTGGAACT CCTTTGGGTCCCAAGGAGGTCCCATAGCTACCTNACGNGAGTTATGTACAACAGGCGC ACAAGTTTGt ]
[+] EMBL AK104212 [ GAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTG ]
[+] EMBL AU161549 [ CAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAANT NGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT TGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAAGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACANGCGC ]
[+] EMBL AU031340 [ GCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATNTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGANGCCTTGTGAAATGTTTTAT ]
[+] EMBL AU031341 [ nCTGTTGGTAAGCATANCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTCCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGATTGATGTACAACAGGCGCAACAAGTTTGANCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACAaaaa ]
[+] EMBL C73351 [ GCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGNTTGGGAACCATATGGCAATCCCAATACTTCGTACTTGAATT NGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G ]
[+] EMBL AU068926 [ CTGTCCCGAT CATATGT GGGATGATGNAAACTCCC TTGGGTCCCAAGGAGNC CCATAGCTACCTGACGAGAGTGATGTACAACA GCGCAACAAGTTTGATCCCCTCTGNAACTCCCTTGTAATTGGTGGGTTGAAAAAGGGTCCAAAGGTTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAA ]
[+] EMBL OSS11314A [ TGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTACTTGAA T GGCGCGAGGGACCATGACA TTTGAGGGAGCTTGTCAAGTTTNGTTTGAGGAAGTGCTTTGCTTTGTCCTGCTTGTACCGTGACCCGATCATCTTATTTAACA AGTTTCAGATTTGCC AGATCCAC ACTTAGGGGAGGCGGCCATTTTACCCGGCATATTCAT ]
[-] EMBL CF309063 [ TACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTGGATTTCTACCTT CTGTGGCCGTTAAaaaa ]
[+] EMBL AU165646 [ CAACAAGTTTGATCCCNTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCANAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGANAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCAA AAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI798246 [ acacCAC CTTTGAGGAAAACCAC TTCCCACCTGGTTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAA C TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGC ACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAA ]
[+] EMBL AU161550 [ CA CTGGGTTTGGGACCCATATGGCAACCCCAATA TTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTNCCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTAaaaaa ]
[+] EMBL BI799661 [ CATAT GCCATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAA C TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TT CCAAGAT CAC ACTGA GGGA GCGACCA TCTACCC CCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCT CAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGA GCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGT C ACTTAGATTTCTACCTTCCTGTGCCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAA ]
[+] EMBL BI796792 [ GGCAATCCCAATACTTCGTAC TGAA T GCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACACAGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAAA ]
[+] EMBL BI797585 [ cgtTAC TGAA TGGGCGCGA GGA CATGACATTTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGC ACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTAaaaa ]
[-] EMBL CA999614 [ CAGGGTGCGGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGAT ]
[+] EMBL AU031118 [ TTNTGCTGCAGAGGCTGAATGTCAGGCCATGANCCAGGATGAAGAANCAGGCTCTGTTGCTGAGAGGCCTTGTNAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTNGATTTNTACCTT CTGTGGCCGTTAAGCCTGGAACTATNTTATATATGATGAAAGTCTGTTTTGTTTCGANNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU163323 [ nAAATGTTTTATNTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTNTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATNATGAAAGTCTGTTTTGTTTCGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_16228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[CAGATTCTTGCGGCGATTCATCTTCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGATTCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGT]
[+] EMBL CF309062 [CAGATTCTTGCGGCGATTCATCTTCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGATTCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGT]
consensusID : consensus_16228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[AAACCCAACCATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAATGGGCCGCGAGAACATGGACAATTTGAGGAAAGCTGTCAAGCTTGCTTTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTATTAACAAGTTCCAGATGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTATTTATGCTCCAGAGGCTGAATGTCAGCCATGAACCAGGATGAAGAACACAGGCTCTGTTCTGAGAGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGGACATTCTGATCGCCAACTTAGATTTCCTCACCTTCTGGGCCGTTAAGCCGGGAACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC]
[+] EMBL BI796842 [AAACCCAACCATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAATGGGCCGCGAGAACATGGACAATTTGAGGAAAGCTGTCAAGCTTGCTTTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTATTAACAAGTTCCAGATGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTATTTATGCTCCAGAGGCTGAATGTCAGCCATGAACCAGGATGAAGAACACAGGCTCTGTTCTGAGAGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGGACATTCTGATCGCCAACTTAGATTTCCTCACCTTCTGGGCCGTTAAGCCGGGAACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16228#0 AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGA 60
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 GGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACG 120
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 GATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGA 180
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 GGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTG 240
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 TCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGG 300
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 AGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATT 360
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 TCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATG 420
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 GAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGC 480
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 GCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAA 540
consensus_16228#2 ------------------------------------------------------------
consensus_16228#1 ------------------------------------------------------------
consensus_16228#0 AGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAAC- 599
consensus_16228#2 --------------------------------------------------AAACCCAAC- 9
consensus_16228#1 -------------------------------------CAGATTCTTGCGGCGATTCATCT 23
* *
consensus_16228#0 --CACATTGC-CACTGGGTTTGGGAACCA-TATGGCAATCCCAATACTTCG-TACTGAAT 654
consensus_16228#2 --CATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAAT 67
consensus_16228#1 TCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGAT 83
* * * * * * * * * * * ** ** **
consensus_16228#0 G----G--CGCGAGGAC--ATGAC---ATTTGAGGAA-GCTGT--CAAGCTTG--TTGAG 698
consensus_16228#2 G----GGCCGCGAGAAC--ATGGACA-ATTTGAGGAAAGCTGT--CAAGCTTGCTTTGAG 118
consensus_16228#1 TCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCG-G 142
** ** *** ** * * ** * **** * * *
consensus_16228#0 AAGTGCTTGCTTGTCCTGCTGTACCGTG-ACCGATCATCTAT---TAACAAGTTC-CAGA 753
consensus_16228#2 AAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTAT---TAACAAGTTC-CAGA 174
consensus_16228#1 CGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAA 202
*** * * * ** * * * * ** * *** * * ** * ** *
consensus_16228#0 TTGCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACT 813
consensus_16228#2 TGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACT 234
consensus_16228#1 TTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGA--CACTGGAGCCTCA-T 259
* * * * *** * **** * * * ** ** ** ** * *
consensus_16228#0 GGGGCTTCGCTGCC-TTTGAAAATCCGGCCCAGGGTGC-TGTAGGATCATGGTAGATTTA 871
consensus_16228#2 GGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTA 294
consensus_16228#1 ATGGCTCAACTTTGCGATACAAGAGCG---TGGAGCGCATTAAGGCTGTTGGTAAGCATA 316
**** ** * ** ** * * * * *** * ***** **
consensus_16228#0 TTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAA-ACAGGCTCTGTT 930
consensus_16228#2 TTTATGCTCCAGAGGCTGAATGTCAG-CCATGAACCAGGATGAAGAACACAGGCTCTGTT 353
consensus_16228#1 GCCTTATTGGAGCAAGTG---GGGAGTTCAGTGATTTCCA-GGAGATTTTGCGCTATTTG 372
* * ** ** * ** ** * * * *** *** * *
consensus_16228#0 GCTGAGA-GGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTG 989
consensus_16228#2 -CTGAGA-G-CCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTG 410
consensus_16228#1 GATGAATTAACCCTGTCCGAT--CATATGTGGG-ATGATGGAAACTCC----TTGGGTCC 425
*** ** *** ** *** ** ** * ******** *** *
consensus_16228#0 TATG-ACATTCTGATCGTGCAACTTAGATTTCT--ACCTTCTGTGGCCGTTAAGCCTGGA 1046
consensus_16228#2 TATGGACATTCTGATCGC-CAACTTAGATTTCCTCACCTTCTG-GGCCGTTAAGCCGGGA 468
consensus_16228#1 CAAGGAGGTCCATAGCTACCTGACGAGAGTG----ATGTACAACAGGCGCAA---CAAGT 478
* * * * * * * * *** * * * * * ** * * *
consensus_16228#0 ACTATATTATATATGATGAAAGTCTGTTTTGTTTCGAAAAAAAAAAAAAAAAAAAAAAAA 1106
consensus_16228#2 ACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC------------------------- 503
consensus_16228#1 TTGATCCCCTCTGGAACTCCCTTGTAATTGGT---------------------------- 510
** * * * * * ** *
consensus_16228#0 AAAAAAAAAAA 1117
consensus_16228#2 -----------
consensus_16228#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||