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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence
[GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC]
[+] EMBL AK068476 [GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC]
consensusID : consensus_1626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG]
[+] EMBL CA753381 [GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1626#0 GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAA 60
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 TGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCG 120
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 CGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGA 180
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 GCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGC 240
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 CGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGT 300
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 TCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGA 360
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 CCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGT 420
consensus_1626#1 -------------------------------------GGCGTTCGCCGCCATCAAGCAGT 23
***********************
consensus_1626#0 CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 480
consensus_1626#1 CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 83
************************************************************
consensus_1626#0 CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 540
consensus_1626#1 CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 143
************************************************************
consensus_1626#0 TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 600
consensus_1626#1 TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 203
************************************************************
consensus_1626#0 CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 660
consensus_1626#1 CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 263
************************************************************
consensus_1626#0 ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGG 720
consensus_1626#1 ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGC 323
***************************************************** ****
consensus_1626#0 CAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGT 780
consensus_1626#1 CGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTC-----CGACCTCGCGCCCGGCCCGG- 377
* ** * * ** * * ****** ** * *** *** **
consensus_1626#0 GATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAG 840
consensus_1626#1 ------------------------------------------------------------
consensus_1626#0 AGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC 881
consensus_1626#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||