|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1237 fasta sequence
[GAGTAGAAAAGCGTCCTCAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG-TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT-CGCCTCCA-TCGCGCCCT-TC-GGCAACGCCGAG-GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC--GGCGCCGTGATCGACTACATC-AACTTCC-AGTTCTACGCCTACGGCGCCAGCACGA-CGGAGGCGCA-GTACGTCGACTTCTTCAACCA-GCAGATCGTC-AA-CTACCCCGGA-GGGAACATCCTTGCGAGCTTCACGA-CGGCGGCGACGACGACCTCGGTGCCC-GTCGA-GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT-GCTGATCATTCCAGGAG--CCA-AGGGTTCAAGTATGA-GACAGAATCGCAAGCA-CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA-AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT-ATGTTGTGTATGTCATTATTGGATTGTTCCTGTTTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF316348 [GAGTAGAAAAGCGTCCTCAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCC ]
[+] EMBL CF315864 [ AGAAAAGCGTCCTCAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACC ]
[+] EMBL CF337130 [ CTCAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCAC ]
[+] EMBL AK071453 [ CAACCAATCAATTGCAAGCAATTTCTCCATCACAGGAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTATTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT ATGTTGTGTATGTCATTATTGGATTGTTCC ]
[+] EMBL CF318031 [ CAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATC ]
[+] EMBL CF319630 [ CAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCAT ]
[+] EMBL AF350426 [ gggCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAAaaaaaaaaa ]
[+] EMBL CA755375 [ ATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCCCAGCTCATTGCTGTAGACCTCCTCCCGGTCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGGAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCCACGTGAGGGTGGCCGACAGCATGGGCGGCGCCCCCGTGAACGACCGCCCGGGCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCA CGGGATCATCCAGGACAAC ACCTGGACGGGATCGACATCCACTACCAGCAGTTCCAGGGCGAAACGGACACCTTCACCGAGTGCGTCGGGCGCCTCATCACGGGGGTCAAGGGCAAGGGGGTGAACAAGAT CGCCTCCC TCGCGCCCT TT GGGGAAACCCAG GGCCAGCGGCCTTACATGTGGCTGTGGGCCAAATACCAGGC CCG GATCGAATACATC AACTT C AGGTCTACGC ]
[+] EMBL CB654207 [ CTCCATCACATAAATCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCTGCGCCATCTTCAACGGCGTGAAATTCACCGACGTGCCAATCAATCCTAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCGATGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAAGACAACAACCTGTACGGCATCAACATCGACTACGAGCAAATCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGACAAagag ]
[+] EMBL AU062762 [ TCCATCACAGAAGTCACCAATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCNTCNCGGCCCTTNTGGCCTTNCAAGCTCCAATGGCCACGGCAGTAAACTNCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATNAATCCGAAAGTCCGGTTCGACTTCATCNTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGNCGACCCNGACCAACGGCAAGTTCAACATCTTTTGGCA ]
[+] EMBL CF296494 [ CCTCCTCCCGGCCCTTCTGGCCTTCCAAGCTCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCG ]
[+] EMBL CB629889 [ ACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAATGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCTTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGGATCTTCATCT ]
[+] EMBL AK061215 [ GGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGATCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT ATGTTGTGTATGTCATTATTGGATTGTTCC ]
[+] EMBL AF330230 [ AACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCCCGGTCTTCTTCAACATCACCTCCGTCGACTCG TGGGTAAACAACGCTGTCGAGTCCCTCACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAA ]
[-] EMBL CB629890 [ GGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAGGTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAGGGGGTGATCAAGTT CGCCTCCA TCGCGCCCT TC GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTGCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCTACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATGAGAGATAAAACCCCACCCGTGTTATACGTACAAAAATaag ]
[+] EMBL BI812079 [ gaCTCA GCCCA GGGGTGATTCAGTTCCCCCTCC TCGCGCCCTGTC GGCAATCCCGA GTCCAGCGCCATTACATGGC CTGTGGCCCAAGTAC GGC CCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCCCA GTACGTCGACTTCTTCAACCA CAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTGCTGGCTAATGCCACCATCAATTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAAC AAGATCACA AGAGCTGTACTATGAAAATAAGCTACTCAAATTTGAAATACGAATTTGAATTAGCATCTAaaaaaaaaa ]
[-] EMBL CF317674 [ GTGATCAAGTT CGCCTCCA TCGCGCCCT TG GGCAACGCCGAG GTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTAC GGCGCCGTGATCGATTACATC AACTTCC AGTTTTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAACAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTAaaaaa ]
[+] EMBL BM421521 [ ctAGTT CGCCTCCAGTCGCGCCCT TCGGGCTACNCCGAGTGTCCAGC CCATTACATGGCNCTGT GGCCAAGTAC GGCGCCGTGATCGACTACATCGAACTTCC AGTT TACGCNTACGGCGCCAGCACGAGCGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AAGCTACCCCGGA GGGAACATCCTTGCGAGCTTCACGAGCGGCGGCGACGACGACCTCGGTGCCCAGTCGAGGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAATCTGTACGGCATCTTCATCT GGCTGGCTGATCATTCCAGGAGNCCCANAGGGTTCAAGTATGATGACAGAATCGCAAGCA CTGCTGGCTAATGCCACCATCAAGTACTAG TAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCTACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATAa ]
[+] EMBL BI812037 [ TT CGCCTCCA TCGCGCCCT TC GGCAAC CCGAG GTCCAGCGCCATTACATGGC CTGT GGCCAAGTAC GGCGCCGTGATCGACTACATC AACTTCCAAGTTCTACGCCTACGGCGCCAGCACGA CGGAGGC CA GTACGTCGACTTCTTCAACCACGCAGATCGTCAAA CTACCCCGGAGGGGAACATCCTTGCGAGCTTCACGA C GC GCGACGACGACCTCGGTGCCC TCGA GACGGCGCTGAGCGCTT CCGGACTCTGCAGAAGGAGGGGAA CTGTACGGCATCTTCATCT GGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCACCTGCTGGCTAATGCCACCATCAATTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAAC AAGATCACA AGAGCTGTACTATGAAAATAAGCTACTCAAATTTGAAATACGAATTTGAATTAGCATCTAaaaaaaaaa ]
[-] EMBL CF319631 [ CATGGCGCTGTGGGCCAAGTAC AGCGCCGTGATCGACTACATC AACTTCC AGTTCTACGCCTACGGCGCCAGCACGA CGGAGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAaaaaaa ]
[-] EMBL CF315865 [ CACGA CGGGGGCGCA GTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCACCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCAaaaaa ]
[+] EMBL CA752768 [ ccgcccggGCAGGTACGTCGACTTCTTCAACCA GCAGATCGTC AA CTACCCCGGA GGGAACATCCTTGCGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGG ]
[-] EMBL CF296493 [ TCCTTTGGAGCTTCACGA CGGCGGCGACGACGACCTCGGTGCCC GTCGA GACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCCAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT ATGTTGTGTATGTCATTATTGGATTGTTCCTGTTTTAAAAAA ]
[+] EMBL BI812381 [ GA GACGGC CTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCC AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTGCTGGCTAATGCCACCATCAATTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACCAAGATCACACAGAGCTGTACTATGAAAATAAGCTACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCCACCGTGTTATACGTACAGACATGCTTGATGTTGTGTATGTCATTATTGGATTGTTCCTGTTTTGTTGAAAAA ]
[-] EMBL CF316349 [ CCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACA AGAGCTGTACTATGAAAATAAGCAACTCAAATTTGAAATAaaaaaaaa ]
[-] EMBL OS38160 [ caaGGGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTGCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTGCT GCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATTATTGTTca ]
[+] EMBL CB839816 [ GGAAGCTGTACGGCATCTTCATCTGGGCT GCTGATCATTCCAGGAG CCA AGGGTTCAAGTATGA GACAGAATCGCAAGCA CTTCTGGCTAATGCCACNATCAGTTACTAGCTAGTAGCTAGTTTTCTTTGCTGCATTATTGTTTCACATTTT ACAAAGATCACA AGCTGTACTATGAAAATAAGCA ]
[+] EMBL CF327691 [ TGAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT ATGTTGTGTATGTCATTATTGGATTGTTCCTGTTTAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF327690 [ GAAAATAAGCAACTCAAATTTGAAATACGAATTTGAATTAGCATTTAGTATATATTTAGCCGTGCATCATTCCAGGTGGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTT ATGTTGTGTATGTCATTATTGGATTGTTCCTGTTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_16314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[TNCNAANTTNGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCTTCCAAGCTCCAATGGCCACGGAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGAAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCACCGTTGAACGACCGCCCGGTTTTCTTNAACATTAACTTCGTCGANTTGTGGGGTAAACAACGTTGT]
[+] EMBL C26523 [TNCNAANTTNGCAAGCAATTTCTCCATCACAGAAGTCACCAATGGGCTCCGCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCTTCCAAGCTCCAATGGCCACGGAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAACGGCGTGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCGCCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAGTTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGCAGAGAAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCACCGTTGAACGACCGCCCGGTTTTCTTNAACATTAACTTCGTCGANTTGTGGGGTAAACAACGTTGT]
consensusID : consensus_16314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[ACCCGAGGTTCCAGCCGCCATTAACATGGCACCTTTGGCCACAAATGTACAGGCACGTGTATCGATGACATCAACTTCCAGTTTTACGCCTACGGCTCCAAGCACGACGGAGGCCCACGTACGTCGACTTCTTCAACCCGCAAGATCGGTCAACTACCCCGGAGGGAACATCCTTGCGAGCGTTCACGACGGCGGCGACGACGACCTCGGTGCCCGTCGAGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAACTGTACGGCATCTTCATCTGGCCTCTGATCATTCCAGGAGCCACAGGGTTCAAGTATGAGACAGAATCGCAAGCACTGCGTGGCTAATGCCACCCAGTCAAATTACTAGCTAGTAGCTAGTTTTGTTTGCTGCA]
[+] EMBL BI807534 [ACCCGAGGTTCCAGCCGCCATTAACATGGCACCTTTGGCCACAAATGTACAGGCACGTGTATCGATGACATCAACTTCCAGTTTTACGCCTACGGCTCCAAGCACGACGGAGGCCCACGTACGTCGACTTCTTCAACCCGCAAGATCGGTCAACTACCCCGGAGGGAACATCCTTGCGAGCGTTCACGACGGCGGCGACGACGACCTCGGTGCCCGTCGAGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAACTGTACGGCATCTTCATCTGGCCTCTGATCATTCCAGGAGCCACAGGGTTCAAGTATGAGACAGAATCGCAAGCACTGCGTGGCTAATGCCACCCAGTCAAATTACTAGCTAGTAGCTAGTTTTGTTTGCTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16314#0 GAGTAGAAAAGCGTCCTCAACCAATCAATTGCAAGCAATTTCTCCATCACAGAAGTCACC 60
consensus_16314#1 ------------------TNCNAANT--TNGCAAGCAATTTCTCCATCACAGAAGTCACC 40
consensus_16314#2 -----------------ACCCGAGGTTCCAGCCGCCATTAACATGGCACCTTTGGCCACA 43
* * ** ** * * * * ***
consensus_16314#0 AATGGGCTCCGCCAAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGCCTTCCAAGC 120
consensus_16314#1 AATGGGCTCCGC-AAGCTCATTGCTGTAGTCCTCCTCCCGGCCCTTCTGGC-TTCCAAGC 98
consensus_16314#2 AATGTAC--AGGCACGTGTATCGATGACATCAACTTCCAG-----TTTTACGCCTACGGC 96
**** * * * * ** * ** ** * *** * * * * **
consensus_16314#0 TCCAATGGCCACGGCAGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAA 180
consensus_16314#1 TCCAATGGCCACGG-AGTAAACTCCAACCTCTTCCGGGACTACATCGGCGCCATCTTCAA 157
consensus_16314#2 TCCAAGCACGACGG-----AGGCCCACGTACGTC---GACTTCTTCA-----ACCCGCAA 143
***** * **** * *** * ** **** * ** * * ***
consensus_16314#0 CGGCG-TGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCG 239
consensus_16314#1 CGGCG-TGAAGTTCACCGACGTGCCAATCAATCCGAAAGTCCGGTTCGACTTCATCCTCG 216
consensus_16314#2 GATCGGTCAACTACCCCGGAGGGAACATCCTTGCGAGCGTTCACGACGGCGGCGACGACG 203
** * ** * * *** * * *** * *** ** * ** * * * **
consensus_16314#0 CCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAG---- 295
consensus_16314#1 CCTTCATCATCGACTACACCACCGAGACGAACCCGCCGACCCCGACCAACGGCAAG---- 272
consensus_16314#2 ACCTCGGTGCCCGTCGAGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAC 263
* ** * * ** * * **** * * * * ** *
consensus_16314#0 --TTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGC 353
consensus_16314#1 --TTCAACATCTTCTGGCAGAACACGGTGCTCACCCCGTCGGCCGTCGCGTCGATCAAGC 330
consensus_16314#2 TGTACGGCATCTTC-ATCTGGCCTC--TGATCATTCCAGGAGCCACAGGGT---TCAAGT 317
* * ******* * * * * ** *** ** *** * ** *****
consensus_16314#0 AGAGCAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCCACCGTGAACGACCGCC 413
consensus_16314#1 AGAGAAACCCCAACGTGAGGGTGGCCGTCAGCATGGGCGGCGCACCGTTGAACGACCGCC 390
consensus_16314#2 AT-GAGACAGAATCGCAAGCACTGC-GTGGCTA---ATGCCACCCAGTCAAATTACTAGC 372
* * ** * ** ** ** ** * * * * ** ** *
consensus_16314#0 CGGTCTTCTTCAACATCACCTCCGTCGACTCGTGGG-TAAACAACGCTGTCGAGTCCCTC 472
consensus_16314#1 CGGTTTTCTTNAACATTAACTTCGTCGANTTGTGGGGTAAACAACGTTGT---------- 440
consensus_16314#2 TAGTAGCTAGTTTTGTTTGCTGCA------------------------------------ 396
** * ** *
consensus_16314#0 ACCGGCATCATCCAGGACAACAACCTGGACGGCATCGACATCGACTACGAGCAGTTCCAG 532
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 GTCGACCCGGACACCTTCACCGAGTGCGTCGGCCGCCTCATCACGGTGCTCAAGGCCAAG 592
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 GGGGTGATCAAGTTCGCCTCCATCGCGCCCTTCGGCAACGCCGAGGTCCAGCGCCATTAC 652
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 ATGGCGCTGTGGGCCAAGTACGGCGCCGTGATCGACTACATCAACTTCCAGTTCTACGCC 712
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 TACGGCGCCAGCACGACGGAGGCGCAGTACGTCGACTTCTTCAACCAGCAGATCGTCAAC 772
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 TACCCCGGAGGGAACATCCTTGCGAGCTTCACGACGGCGGCGACGACGACCTCGGTGCCC 832
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 GTCGAGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATC 892
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 TTCATCTGGGCTGCTGATCATTCCAGGAGCCAAGGGTTCAAGTATGAGACAGAATCGCAA 952
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 GCACTTCTGGCTAATGCCACCATCAGTTACTAGCTAGTAGCTAGTTTTGTTTGCTGCATT 1012
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 ATTGTTTCACATTTTTAAACAAAGATCACAAGAGCTGTACTATGAAAATAAGCAACTCAA 1072
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 ATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATTCCAGCT 1132
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 GGAATTTAAGATAAAACCCCAACCGTGTTATACGTACAGACATGCTTATGTTGTGTATGT 1192
consensus_16314#1 ------------------------------------------------------------
consensus_16314#2 ------------------------------------------------------------
consensus_16314#0 CATTATTGGATTGTTCCTGTTTTAAAAAAAAAAAAAAAAAAAAAA 1237
consensus_16314#1 ---------------------------------------------
consensus_16314#2 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||