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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1437 fasta sequence
[AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC-GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC-GCAGGGGATGGAGGTGTC-GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA-CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG-CGGGCGGCGTGCGAGGGCAGCCTCCGGC-GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG-AAGAAGCTGGTTG-AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG-CGTCGACGATAAGGAGGGCTCACGTGGTTCAT-CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG-AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG-CATTGGAATTGTGGCGTACAGCCCGCTAGGG-AGAGGG-TTCTT-CT-CCAGTGGAG-CT-AAAC-TGGTCGAT-GAACTT-CC-TGACG-ACGATTT-CCGCAAGAGCCTACCTAGATT-CCAG-CCAGAGAA-CCTCGAGAAGAACGCGGCGATATT-CGAGAAGGTTAATGCCATGG-CAGCGAGAAAGGGATGCACAT-CGTCGCAGCTCG-CACTGG-CCTGGG-TTCAT-CA-CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT-CAGTGAAGCTCACACCTGACGA-GATGTCTGAACTTGAGTCGTATGCTT-CAGCTGACGTTGTG-C-AAGGTGACAGGTATCATGGTAC-TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG-T-GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA-CTATAAAAAAAAAAACAAAAA]
[+] EMBL AU068693 [AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAG AGCAGCGACAG TCC GGCGGCAG GGTGGTGCGGCGAATNAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGCCNGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCNTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTTGCGGCGGCGGCGGCGACGGAGGAGGAGG ]
[+] EMBL AK103553 [ TCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG CGTCGACGATAAGGAGGGCTCACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTT ]
[+] EMBL AU102211 [ CGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACA CTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGNCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGCGGGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG CGTCGACGATAAGGAGGGCTCACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCGAAAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTAAAACCCGCT ]
[+] EMBL AU163342 [ CTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGG CACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTTCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAACTGAAAGAA CTGGTTGAAAGAAGGCAAGATCAAATACATTGGA ]
[+] EMBL C27016 [ TCAATCCTCTCCCAAGAATCGATCGGCCGGCCATG GNCAGCAGCAGCGACA NTCCNGGCGGCAG GTNNGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAG CGGA CNTGACCATGGTGGCGCTCGTCCG CACGCCGTCGCCGCGGG TTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGG ]
[+] EMBL CF322920 [ TCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGC ]
[+] EMBL AU093526 [ AAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGTTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCA GGGATGGAGGTGTC GGCGCA GGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGA GCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCTTCACCTTCCTCGACACCTCCGACGTCTAC GGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCA GTGCAGGTGGCCACCAA TTCGGCATCACGCCGGCGTTGGAAGTGCGCGGCGACCCG ]
[+] EMBL AU068004 [ GAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGA GNCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGACGGCGTGGGAGGTNCGCGGCGACCCG ]
[+] EMBL AU161359 [ ATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAAGTGCGCGGCGACCCGGCGTACGTGCCGGCCGGCGTGCGAGGCAAGCCTTCGGC GGCTC GCGTCGGCTGC ]
[+] EMBL AU166509 [ GCTGGGGTCAGCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTA ]
[+] EMBL AU181431 [ TGGGGTC GCAGGGGATGGAGGTGTCAGGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCA ]
[+] EMBL AU071015 [ CTGCCGTCGACGATAAGGAGGGCTCACGTGGTTCATCCCGATCACCNCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGNTTTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGGCCATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATTCCGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACATCCNTCGCAGCTCGCCACTGGNCCTGGGTTTCATCCACCCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAaaaaaaaaa ]
[+] EMBL AU163343 [ ACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAa a aa ]
[+] EMBL C26036 [ GTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAG CCGCTA GG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGANGATGTCTGAACTTNAGTCGTATGCTT CA CTGACGTTNTG CAAAGGTGACAGGTATCATGGTACTTTTTCTNAACA ]
[+] EMBL AU092250 [ aaTTGN CATTGGAATTGTGNCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTNACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAaaaaa ]
[+] EMBL CB000424 [ tcc ttTTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGACCTATAA ]
[+] EMBL AU093527 [ cgcCTAGGGAAGAGGGTTTCTTCCC CCAGTGGAGCCTAAAAC TGGTCGATGGAACTT CCTTNACGAACNATTTCCCNCAAGAGCTTACCTAGATTCCCAGCCCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCCTGGCCAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCTC CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGTCCAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTTCCAGCTGACGTTGTGCC AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTAaaaa ]
[+] EMBL AU092444 [ na AGAGGGTTTCTT CTCCCAGTGGAGCCT AAACTTGGTCGAT GAACTTNCC TGACG ACGATTT CCGCAAGAGCATACCTAGATTCCCAG CCAGAGAACCCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATNCNATGG CAGCGAGAAAGGGATGCACAN CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAAAAaa ]
[+] EMBL AU161396 [ C TGACG CCGATTN CCGCAAGAGCCTACTTAGATT CCAGCCCAGAGAC CNTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGC CAGCGAGAAAGGNATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CN CCAAGGGANCGATGTCTGTCCCATACCAGG ACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCAaaaa ]
[-] EMBL CF306104 [ CAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCcctct ]
[-] EMBL CB000184 [ acgagGCTCG CACTGT CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCTCTTTCCATAATATGGCTCATGAATAAACAAATGTCCTG ]
[+] EMBL AU161360 [ AGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA NATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATAaaaaaaa ]
[+] EMBL C27895 [ GT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCA CAGNTGGGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATAT ]
[+] EMBL AU166510 [ CTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA CTAAAAAA ]
[+] EMBL AU181432 [ A GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA CTATAAAAAAAAAAACAAAAA]
[+] EMBL CF331810 [ AGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAaaaaaaaa ]
[-] EMBL CF330686 [ CTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATATGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTGGGGTAaaaaaaaaa ]
[+] EMBL CF326788 [ TTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATAaaaaaaa ]
[-] EMBL CF326787 [ TGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATAaaaaaaaa ]
consensusID : consensus_16427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 389 fasta sequence
[AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAACTTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAACNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]
[+] EMBL AU222500 [AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAACTTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAACNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAAAAAAAAA ]
[-] EMBL CF331811 [ GTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]
[+] EMBL CF330685 [ CCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATTTGCTG ]
consensusID : consensus_16427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[GCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCANAGCAGCGACANTCCGGCGGCACGGTGGTGCGGCGAATGAAGCTGGGGTCGCAGGGGATGGAGGTGTCGGCGCANGGGCTGGGCTNCATGGGNATGTCGGCGGTTTACGGGGAGCGAAGCCGGAGCCGACAATGTTGCGTTCGTCCGCANGNCGTCGCCGGGGTTTAACTTCTTNGAAACTTCGACGTNTACGGCCGAAACCAACGAGTTCTCGTCGAAAA]
[+] EMBL C28685 [GCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCANAGCAGCGACANTCCGGCGGCACGGTGGTGCGGCGAATGAAGCTGGGGTCGCAGGGGATGGAGGTGTCGGCGCANGGGCTGGGCTNCATGGGNATGTCGGCGGTTTACGGGGAGCGAAGCCGGAGCCGACAATGTTGCGTTCGTCCGCANGNCGTCGCCGGGGTTTAACTTCTTNGAAACTTCGACGTNTACGGCCGAAACCAACGAGTTCTCGTCGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16427#0 AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCG-ATCGGCCGGCCAT 59
consensus_16427#2 -----------------------GCTCAATCCTCTCCCAAGAATCG-ATCGGCCGGCCAT 36
consensus_16427#1 ------------------AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAAC 42
** *** * *** *** * * * * * *
consensus_16427#0 GGCGGCAGCA--GCAGCGACAGCTCCGGCGG----CAGCGGTGGTGCGGCGAATGAAGCT 113
consensus_16427#2 GGCGGCAN-A--GCAGCGACAN-TCCGGCGG----CA-CGGTGGTGCGGCGAATGAAGCT 87
consensus_16427#1 TTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAA-CT 101
** * * * * * * * * ** ** * * * **** **
consensus_16427#0 GGGGTCGCAGGGGATGGAGGTGTCGGCGCAGGG-GCTGGGCTGCATGGGCATGTCGGCGG 172
consensus_16427#2 GGGGTCGCAGGGGATGGAGGTGTCGGCGCANGG-GCTGGGCTNCATGGGNATGTCGGCGG 146
consensus_16427#1 TGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAA 161
* **** * * * * * *** ** * ** ***** * *
consensus_16427#0 TGTACGGGGA----GCGGAAGCCGGAGGCCGACATGGTGGCGCTC-GTCCGCCACGCCGT 227
consensus_16427#2 TTTACGGGGA----GCG-AAGCCGGAG-CCGACAATGTTGCGTTC-GTCCGC-ANGNCGT 198
consensus_16427#1 CNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGT 221
** * ** * * * ** ** * * ** * * * **
consensus_16427#0 CGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCT-ACGGGCCGCACACCAACGAGG 286
consensus_16427#2 CGCCGGGG--TTTAACTTCTTNGAAACTTC-GACGTNT-ACGG-CCG-AAACCAACGAG- 251
consensus_16427#1 CAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGC 281
* * * * * ** * ** * ** * * * * * * **
consensus_16427#0 TGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGG 346
consensus_16427#2 TTCTCGTCGAAAA----------------------------------------------- 264
consensus_16427#1 TTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAA 341
* ** *
consensus_16427#0 TGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTGC 406
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 AAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA------------ 389
consensus_16427#0 GGGCGGCGTGCGAGGGCAGCCTCCGGCGGCTCGGCGTCGGCTGCATCGACCTCTACTACC 466
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 AGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTGAAGAAGCTGG 526
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TTGAAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTGCGTCGACGATAAGGA 586
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 GGGCTCACGTGGTTCATCCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGG 646
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 ATGTCGAAGAAGACATTGTTCCAACTTGCAGAGAACTTGGCATTGGAATTGTGGCGTACA 706
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 GCCCGCTAGGGAGAGGGTTCTTCTCCAGTGGAGCTAAACTGGTCGATGAACTTCCTGACG 766
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 ACGATTTCCGCAAGAGCCTACCTAGATTCCAGCCAGAGAACCTCGAGAAGAACGCGGCGA 826
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TATTCGAGAAGGTTAATGCCATGGCAGCGAGAAAGGGATGCACATCGTCGCAGCTCGCAC 886
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TGGCCTGGGTTCATCACCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCC 946
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 ACAACTTCGACCAGAATGTGGGAGCACTGTCAGTGAAGCTCACACCTGACGAGATGTCTG 1006
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 AACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTC 1066
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAAT 1126
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGA 1186
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 TAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAT 1246
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 GTTCCAGTGTTTTTGCCATGTGGCGCAGCAGTGGTTTGTATGATTTGGATGATATATAGT 1306
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 ATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTG 1366
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 CCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGACTATAAAAAA 1426
consensus_16427#2 ------------------------------------------------------------
consensus_16427#1 ------------------------------------------------------------
consensus_16427#0 AAAAACAAAAA 1437
consensus_16427#2 -----------
consensus_16427#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||