These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1437 fasta sequence [AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC-GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC-GCAGGGGATGGAGGTGTC-GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA-CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG-CGGGCGGCGTGCGAGGGCAGCCTCCGGC-GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG-AAGAAGCTGGTTG-AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG-CGTCGACGATAAGGAGGGCTCACGTGGTTCAT-CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG-AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG-CATTGGAATTGTGGCGTACAGCCCGCTAGGG-AGAGGG-TTCTT-CT-CCAGTGGAG-CT-AAAC-TGGTCGAT-GAACTT-CC-TGACG-ACGATTT-CCGCAAGAGCCTACCTAGATT-CCAG-CCAGAGAA-CCTCGAGAAGAACGCGGCGATATT-CGAGAAGGTTAATGCCATGG-CAGCGAGAAAGGGATGCACAT-CGTCGCAGCTCG-CACTGG-CCTGGG-TTCAT-CA-CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT-CAGTGAAGCTCACACCTGACGA-GATGTCTGAACTTGAGTCGTATGCTT-CAGCTGACGTTGTG-C-AAGGTGACAGGTATCATGGTAC-TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG-T-GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA-CTATAAAAAAAAAAACAAAAA] [+] EMBL AU068693 [AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAG AGCAGCGACAG TCC GGCGGCAG GGTGGTGCGGCGAATNAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGCCNGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCNTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTTGCGGCGGCGGCGGCGACGGAGGAGGAGG ] [+] EMBL AK103553 [ TCACCAGCCGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG CGTCGACGATAAGGAGGGCTCACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTT ] [+] EMBL AU102211 [ CGCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACA CTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGNCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGCGGGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTG CGTCGACGATAAGGAGGGCTCACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCGAAAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTAAAACCCGCT ] [+] EMBL AU163342 [ CTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGG CACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTTCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAACTGAAAGAA CTGGTTGAAAGAAGGCAAGATCAAATACATTGGA ] [+] EMBL C27016 [ TCAATCCTCTCCCAAGAATCGATCGGCCGGCCATG GNCAGCAGCAGCGACA NTCCNGGCGGCAG GTNNGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAG CGGA CNTGACCATGGTGGCGCTCGTCCG CACGCCGTCGCCGCGGG TTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGG ] [+] EMBL CF322920 [ TCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTACTACCAGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTG AAGAAGCTGGTTG AAGAAGGCAAGATCAAATACATTGGATTATCTGAGGC ] [+] EMBL AU093526 [ AAGAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGTTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCA GGGATGGAGGTGTC GGCGCA GGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGA GCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCTTCACCTTCCTCGACACCTCCGACGTCTAC GGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCA GTGCAGGTGGCCACCAA TTCGGCATCACGCCGGCGTTGGAAGTGCGCGGCGACCCG ] [+] EMBL AU068004 [ GAATCGATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGA GNCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGACGGCGTGGGAGGTNCGCGGCGACCCG ] [+] EMBL AU161359 [ ATCGGCCGGCCATGGCGGCAGCAGCAGCGACAGCTCC GGCGGCAGCGGTGGTGCGGCGAATGAAGCTGGGGTC GCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAAGTGCGCGGCGACCCGGCGTACGTGCCGGCCGGCGTGCGAGGCAAGCCTTCGGC GGCTC GCGTCGGCTGC ] [+] EMBL AU166509 [ GCTGGGGTCAGCAGGGGATGGAGGTGTC GGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCATCGACCTCTA ] [+] EMBL AU181431 [ TGGGGTC GCAGGGGATGGAGGTGTCAGGCGCAGGGGCTGGGCTGCATGGGCATGTCGGCGGTGTACGGGGAGCGGAAGCCGGAGGCCGA CATGGTGGCGCTCGTCCGCCACGCCGTCGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCTACGGGCCGCACACCAACGAGGTGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGGTGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTG CGGGCGGCGTGCGAGGGCAGCCTCCGGC GGCTCGGCGTCGGCTGCA ] [+] EMBL AU071015 [ CTGCCGTCGACGATAAGGAGGGCTCACGTGGTTCATCCCGATCACCNCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGNTTTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGGCCATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATTCCGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACATCCNTCGCAGCTCGCCACTGGNCCTGGGTTTCATCCACCCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAaaaaaaaaa ] [+] EMBL AU163343 [ ACGTGGTTCAT CCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAa a aa ] [+] EMBL C26036 [ GTCACTGTGGTCAAGGGATGTCG AAGAAGACATTGTTCCAACTTGCAGAGAACTTGG CATTGGAATTGTGGCGTACAG CCGCTA GG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGANGATGTCTGAACTTNAGTCGTATGCTT CA CTGACGTTNTG CAAAGGTGACAGGTATCATGGTACTTTTTCTNAACA ] [+] EMBL AU092250 [ aaTTGN CATTGGAATTGTGNCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTNACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAaaaaa ] [+] EMBL CB000424 [ tcc ttTTGGAATTGTGGCGTACAGCCCGCTAGGG AGAGGG TTCTT CT CCAGTGGAG CT AAAC TGGTCGAT GAACTT CC TGACG ACGATTT CCGCAAGAGCCTACCTAGATT CCAG CCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGACCTATAA ] [+] EMBL AU093527 [ cgcCTAGGGAAGAGGGTTTCTTCCC CCAGTGGAGCCTAAAAC TGGTCGATGGAACTT CCTTNACGAACNATTTCCCNCAAGAGCTTACCTAGATTCCCAGCCCAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCCTGGCCAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCTC CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGTCCAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTTCCAGCTGACGTTGTGCC AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTAaaaa ] [+] EMBL AU092444 [ na AGAGGGTTTCTT CTCCCAGTGGAGCCT AAACTTGGTCGAT GAACTTNCC TGACG ACGATTT CCGCAAGAGCATACCTAGATTCCCAG CCAGAGAACCCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATNCNATGG CAGCGAGAAAGGGATGCACAN CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAAAAaa ] [+] EMBL AU161396 [ C TGACG CCGATTN CCGCAAGAGCCTACTTAGATT CCAGCCCAGAGAC CNTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGC CAGCGAGAAAGGNATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CN CCAAGGGANCGATGTCTGTCCCATACCAGG ACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCAaaaa ] [-] EMBL CF306104 [ CAGAGAA CCTCGAGAAGAACGCGGCGATATT CGAGAAGGTTAATGCCATGG CAGCGAGAAAGGGATGCACAT CGTCGCAGCTCG CACTGG CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCcctct ] [-] EMBL CB000184 [ acgagGCTCG CACTGT CCTGGG TTCAT CA CCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCTCTTTCCATAATATGGCTCATGAATAAACAAATGTCCTG ] [+] EMBL AU161360 [ AGAATGTGGGAGCACTGT CAGTGAAGCTCACACCTGACGA NATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATAaaaaaaa ] [+] EMBL C27895 [ GT CAGTGAAGCTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCA CAGNTGGGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATAT ] [+] EMBL AU166510 [ CTCACACCTGACGA GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA CTAAAAAA ] [+] EMBL AU181432 [ A GATGTCTGAACTTGAGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTGCCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGA CTATAAAAAAAAAAACAAAAA] [+] EMBL CF331810 [ AGTCGTATGCTT CAGCTGACGTTGTG C AAGGTGACAGGTATCATGGTAC TTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAaaaaaaaa ] [-] EMBL CF330686 [ CTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATATGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATATAGTATCTTTTGTAAGTGGGGTAaaaaaaaaa ] [+] EMBL CF326788 [ TTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATAaaaaaaa ] [-] EMBL CF326787 [ TGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTGGCGCAGCAG T GGTTTGTATGATTTGGATGATATAaaaaaaaa ] consensusID : consensus_16427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 389 fasta sequence [AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAACTTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAACNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA] [+] EMBL AU222500 [AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAACTTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAACNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAAAAAAAAA ] [-] EMBL CF331811 [ GTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTCTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA] [+] EMBL CF330685 [ CCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCATTTGCTG ] consensusID : consensus_16427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [GCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCANAGCAGCGACANTCCGGCGGCACGGTGGTGCGGCGAATGAAGCTGGGGTCGCAGGGGATGGAGGTGTCGGCGCANGGGCTGGGCTNCATGGGNATGTCGGCGGTTTACGGGGAGCGAAGCCGGAGCCGACAATGTTGCGTTCGTCCGCANGNCGTCGCCGGGGTTTAACTTCTTNGAAACTTCGACGTNTACGGCCGAAACCAACGAGTTCTCGTCGAAAA] [+] EMBL C28685 [GCTCAATCCTCTCCCAAGAATCGATCGGCCGGCCATGGCGGCANAGCAGCGACANTCCGGCGGCACGGTGGTGCGGCGAATGAAGCTGGGGTCGCAGGGGATGGAGGTGTCGGCGCANGGGCTGGGCTNCATGGGNATGTCGGCGGTTTACGGGGAGCGAAGCCGGAGCCGACAATGTTGCGTTCGTCCGCANGNCGTCGCCGGGGTTTAACTTCTTNGAAACTTCGACGTNTACGGCCGAAACCAACGAGTTCTCGTCGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16427#0 AAAGCTGTCTCACTTCACCAGCCGCTCAATCCTCTCCCAAGAATCG-ATCGGCCGGCCAT 59 consensus_16427#2 -----------------------GCTCAATCCTCTCCCAAGAATCG-ATCGGCCGGCCAT 36 consensus_16427#1 ------------------AGCGATGTCTGTCCCATACCAGGAACCNCAAAGATCCNCAAC 42 ** *** * *** *** * * * * * * consensus_16427#0 GGCGGCAGCA--GCAGCGACAGCTCCGGCGG----CAGCGGTGGTGCGGCGAATGAAGCT 113 consensus_16427#2 GGCGGCAN-A--GCAGCGACAN-TCCGGCGG----CA-CGGTGGTGCGGCGAATGAAGCT 87 consensus_16427#1 TTCGACCAGAATGTGGGAGCNCTGTCAGTGAAGCTCACNCCTGACGAGATGTNTGAA-CT 101 ** * * * * * * * * ** ** * * * **** ** consensus_16427#0 GGGGTCGCAGGGGATGGAGGTGTCGGCGCAGGG-GCTGGGCTGCATGGGCATGTCGGCGG 172 consensus_16427#2 GGGGTCGCAGGGGATGGAGGTGTCGGCGCANGG-GCTGGGCTNCATGGGNATGTCGGCGG 146 consensus_16427#1 TGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTNTGAA 161 * **** * * * * * *** ** * ** ***** * * consensus_16427#0 TGTACGGGGA----GCGGAAGCCGGAGGCCGACATGGTGGCGCTC-GTCCGCCACGCCGT 227 consensus_16427#2 TTTACGGGGA----GCG-AAGCCGGAG-CCGACAATGTTGCGTTC-GTCCGC-ANGNCGT 198 consensus_16427#1 CNCCTGGAAGAACTNTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGT 221 ** * ** * * * ** ** * * ** * * * ** consensus_16427#0 CGCCGCGGGCGTCACCTTCCTCGACACCTCCGACGTCT-ACGGGCCGCACACCAACGAGG 286 consensus_16427#2 CGCCGGGG--TTTAACTTCTTNGAAACTTC-GACGTNT-ACGG-CCG-AAACCAACGAG- 251 consensus_16427#1 CAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCNCAAATATAGATAGC 281 * * * * * ** * ** * ** * * * * * * ** consensus_16427#0 TGCTCGTCGGCAAGGCGGTGGCGGCGGCGGCGGCGACGGAGGAGGAGGTGCAGGTGCAGG 346 consensus_16427#2 TTCTCGTCGAAAA----------------------------------------------- 264 consensus_16427#1 TTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAATGAAA 341 * ** * consensus_16427#0 TGGCCACCAAGTTCGGCATCACGCCGGCGTGGGAGGTGCGCGGCGACCCGGCGTACGTGC 406 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 AAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA------------ 389 consensus_16427#0 GGGCGGCGTGCGAGGGCAGCCTCCGGCGGCTCGGCGTCGGCTGCATCGACCTCTACTACC 466 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 AGCATCGAATCGACTCCACGGTGCCCGTTGAGATCACGATGGGTGAGCTGAAGAAGCTGG 526 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TTGAAGAAGGCAAGATCAAATACATTGGATTATCTGAGGCCTCTGCGTCGACGATAAGGA 586 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 GGGCTCACGTGGTTCATCCGATCACCGCAGTTCAGATCGAGTGGTCACTGTGGTCAAGGG 646 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 ATGTCGAAGAAGACATTGTTCCAACTTGCAGAGAACTTGGCATTGGAATTGTGGCGTACA 706 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 GCCCGCTAGGGAGAGGGTTCTTCTCCAGTGGAGCTAAACTGGTCGATGAACTTCCTGACG 766 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 ACGATTTCCGCAAGAGCCTACCTAGATTCCAGCCAGAGAACCTCGAGAAGAACGCGGCGA 826 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TATTCGAGAAGGTTAATGCCATGGCAGCGAGAAAGGGATGCACATCGTCGCAGCTCGCAC 886 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TGGCCTGGGTTCATCACCAAGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCC 946 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 ACAACTTCGACCAGAATGTGGGAGCACTGTCAGTGAAGCTCACACCTGACGAGATGTCTG 1006 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 AACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTTC 1066 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAAT 1126 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TAGTCAGAGAGATTGTCATCTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGA 1186 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 TAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAAAAGTTTGTATGGATTGATAAT 1246 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 GTTCCAGTGTTTTTGCCATGTGGCGCAGCAGTGGTTTGTATGATTTGGATGATATATAGT 1306 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 ATCTTTTGTAAGTTGGGTATATGATATCTATTAAGCATAGGAATATAGAAGTTTCGCTTG 1366 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 CCATAATATGGCTCATGAATAAACAAATGTCCTGAACAGCCAAAGTTTGACTATAAAAAA 1426 consensus_16427#2 ------------------------------------------------------------ consensus_16427#1 ------------------------------------------------------------ consensus_16427#0 AAAAACAAAAA 1437 consensus_16427#2 ----------- consensus_16427#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||