These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT] [+] EMBL CB635778 [CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT] consensusID : consensus_1646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN] [+] EMBL CF197104 [TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1646#0 -CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATG 59 consensus_1646#1 TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATG 60 ********************** ******************** ******** ****** consensus_1646#0 ATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGA 119 consensus_1646#1 ATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGA 120 *************** ****************************** ************* consensus_1646#0 CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCAC 179 consensus_1646#1 CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTT---------CACCAC 171 ********************************************* ****** consensus_1646#0 TTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATA 239 consensus_1646#1 TTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATA 231 ***************************** ******** ********************* consensus_1646#0 GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 299 consensus_1646#1 GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 291 ************************************************************ consensus_1646#0 CGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 359 consensus_1646#1 CGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 351 ***** ****************************************************** consensus_1646#0 ATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGA 419 consensus_1646#1 ATTTAGCATCGATGGGGTAATTCTTGATGAAGAGG------------------------- 386 *** ******************************* consensus_1646#0 TTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACT 479 consensus_1646#1 ------------------------------------------------------------ consensus_1646#0 TATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGA 539 consensus_1646#1 -----------------------GCACTATGATGCAGTTTACTATTCCAAAGAAACTTGA 423 ******** *********** **************** consensus_1646#0 AAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATAC 599 consensus_1646#1 AAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATAC 483 *************************** ***************** *********** consensus_1646#0 TGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAA 659 consensus_1646#1 TGCTGACATT-AAAACNNNNNATATATTTACNNNNNNNNAN------------------- 523 ** ******* ***** ********** * consensus_1646#0 GTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTT 719 consensus_1646#1 ------------------------------------------------------------ consensus_1646#0 TGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGG 779 consensus_1646#1 ------------------------------------------------------------ consensus_1646#0 TAATACTTGCATTTT 794 consensus_1646#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||