|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT]
[+] EMBL CB635778 [CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT]
consensusID : consensus_1646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN]
[+] EMBL CF197104 [TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1646#0 -CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATG 59
consensus_1646#1 TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATG 60
********************** ******************** ******** ******
consensus_1646#0 ATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGA 119
consensus_1646#1 ATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGA 120
*************** ****************************** *************
consensus_1646#0 CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCAC 179
consensus_1646#1 CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTT---------CACCAC 171
********************************************* ******
consensus_1646#0 TTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATA 239
consensus_1646#1 TTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATA 231
***************************** ******** *********************
consensus_1646#0 GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 299
consensus_1646#1 GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 291
************************************************************
consensus_1646#0 CGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 359
consensus_1646#1 CGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 351
***** ******************************************************
consensus_1646#0 ATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGA 419
consensus_1646#1 ATTTAGCATCGATGGGGTAATTCTTGATGAAGAGG------------------------- 386
*** *******************************
consensus_1646#0 TTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACT 479
consensus_1646#1 ------------------------------------------------------------
consensus_1646#0 TATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGA 539
consensus_1646#1 -----------------------GCACTATGATGCAGTTTACTATTCCAAAGAAACTTGA 423
******** *********** ****************
consensus_1646#0 AAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATAC 599
consensus_1646#1 AAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATAC 483
*************************** ***************** ***********
consensus_1646#0 TGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAA 659
consensus_1646#1 TGCTGACATT-AAAACNNNNNATATATTTACNNNNNNNNAN------------------- 523
** ******* ***** ********** *
consensus_1646#0 GTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTT 719
consensus_1646#1 ------------------------------------------------------------
consensus_1646#0 TGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGG 779
consensus_1646#1 ------------------------------------------------------------
consensus_1646#0 TAATACTTGCATTTT 794
consensus_1646#1 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||