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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1646 cluster # 1646       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1646#0 length = 794 sequences # 1  
consensus_1646#1 length = 523 sequences # 1  

consensusID : consensus_1646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence
                              [CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT]

[+] EMBL CB635778             [CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGATTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTTATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACTGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAGTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTTGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGTAATACTTGCATTTT]


>consensus_1646#0 CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATGA TTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGAC ATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCACT TGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATAG ATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTC GGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATA TTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGAT TTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACTT ATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGAA AATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATACT GTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAAG TCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTTT GAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGGT AATACTTGCATTTT



consensusID : consensus_1646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN]

[+] EMBL CF197104             [TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATGATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGACATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCATCGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACTTGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN]


>consensus_1646#1 TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATG ATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGA CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCACCACTTGAGGAGA AGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATAGATGGGATC AGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTTCGGACTACT TATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAATATTTAGCAT CGATGGGGTAATTCTTGATGAAGAGGGCACTATGATGCAGTTTACTATTCCAAAGAAACT TGAAAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAA TACTGCTGACATTAAAACNNNNNATATATTTACNNNNNNNNAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1646#0      -CCATACCTCCCTCGACATCATCGCTTCATCCTGCAAGCATATTGTCCAATTCAGACATG 59
consensus_1646#1      TCCATACCTCCCTCGACATCATCACTTCATCCTGCAAGCATATTCTCCAATTCGGACATG 60
                       ********************** ******************** ******** ******

consensus_1646#0      ATTGCGATCACGGCAAGATAGTTGGTGAGGAGCCAGAGGATTGCTATATAGATGTCCTGA 119
consensus_1646#1      ATTGCGATCACGGCATGATAGTTGGTGAGGAGCCAGAGGATTGCTACATAGATGTCCTGA 120
                      *************** ****************************** *************

consensus_1646#0      CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTTCATTTGTTTCACCAC 179
consensus_1646#1      CATAGCGAGAAGCTACTAACCTGCTCGATACAAGAACATTTGTTT---------CACCAC 171
                      *********************************************         ******

consensus_1646#0      TTGAGGAGAAGCCTGACAATTGTCATAAAAGCAGATAACCTTGCTCGGAACATTTCCATA 239
consensus_1646#1      TTGAGGAGAAGCCTGACAATTGTCATAAAGGCAGATAAACTTGCTCGGAACATTTCCATA 231
                      ***************************** ******** *********************

consensus_1646#0      GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 299
consensus_1646#1      GATGGGATCAGCAACAAAACTCAAACAGATAAATTTGGGACAGCAAAACCTCAAAGTTTT 291
                      ************************************************************

consensus_1646#0      CGGACGACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 359
consensus_1646#1      CGGACTACTTATTAGACTATGGGATGCTAAAAACATGGCCTCAGCCAGTACACCAACAAT 351
                      ***** ******************************************************

consensus_1646#0      ATTCAGCATCGATGGGGTAATTCTTGATGAAGAGGTATACTATCCTACACCAAAAAATGA 419
consensus_1646#1      ATTTAGCATCGATGGGGTAATTCTTGATGAAGAGG------------------------- 386
                      *** *******************************                         

consensus_1646#0      TTTATCCTATGCTTAACTTCCAATCTAAATATTACTGATAAAACGATGCAGATTTAGACT 479
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      TATACCAGTTCTAATCTTGCAGGGCACTATGGTGCAGTTTACTGTTCCAAAGAAACTTGA 539
consensus_1646#1      -----------------------GCACTATGATGCAGTTTACTATTCCAAAGAAACTTGA 423
                                             ******** *********** ****************

consensus_1646#0      AAATGAATTTCGTCCATCACTAACTCTAGGTTGTGTCTACATGTTTGTTGATGTCAATAC 599
consensus_1646#1      AAATGAATTTCGTCCATCACTAACTCTNNNNTGTGTCTACATGTTTGTGGATGTCAATAC 483
                      ***************************    ***************** ***********

consensus_1646#0      TGTTGACATTGAAAACAAAAAATATATTTACCACCACCAAAAATACATGTTGCAATTTAA 659
consensus_1646#1      TGCTGACATT-AAAACNNNNNATATATTTACNNNNNNNNAN------------------- 523
                      ** ******* *****     **********        *                    

consensus_1646#0      GTCCAGCACAAAGGTTTATCACCTAGAATCAAGAGGTTCATCCATCCCAAACTATGGTTT 719
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      TGAATTCTGCCCATTTGATCAGATACCATCTAAAAGCGGAATATCAAAACCATTGATAGG 779
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      TAATACTTGCATTTT 794
consensus_1646#1      ---------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)