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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 638 fasta sequence
[ACGCNTCCGACCGTTGGCANTNGCAAAGTAGCAGCCTCATCANTCATCAGTGAGCNCAGTTCGATCGCCGTTACAGATGNCTCCNTCTCNTCGCATGGTCGCGTCCGCCTTCCTCCTNCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGNTGNCGGAGNCGAGGCACTGCCTNTCGCAGAGCCACAGGTTCAAGGGCATGTGCNTNAGCAGCAACAANTGCGCCAACGTGTGCAGGACGGNGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030229 [ACGCNTCCGACCGTTGGCANTNGCAAAGTAGCAGCCTCATCANTCATCAGTGAGCNCAGTTCGATCGCCGTTACAGATGNCTCCNTCTCNTCGCATGGTCGCGTCCGCCTTCCTCCTNCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGNTGNCGGAGNCGAGGCACTGCCTNTCGCAGAGCCACAGGTTCAAGGGCATGTGCNTNAGCAGCAACAANTGCGCCAACGTGTGCAGGACGGNGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031269 [ CTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATNTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGNTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CB483498 [ TGCTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGCTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTGGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATT ]
[+] EMBL AU095067 [ CGCGTGTTCTCCTTTGTCTGTTGTTCATGACGNGCTTCTGTTCTTGGCTTACAGGCTNGTTGAGTTGCTTTCGATTATCCTTGCTTNGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTNGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_16488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 636 fasta sequence
[GCTAGCACAGCACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT-GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG-CCACAGGTTCAAGGGCATGTGCGTG-AGCAGCAAC-AAC-TGCG-CCAACGTGTGCA-GGACGGAGAGCTT-CCCCGACGGCGAGTGC-A-AGTCGCA-CGGCCTCGAGCGCA-AGTGCTTCTGCA-AGAA-GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC-TGC-AGTCGCA-TTGCTCGTCGGCTGTGTATC-TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT-GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA-GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAAGTGTGCTTACGATCGTTTCATCAGTTAAAAAAAAAAA]
[+] EMBL AK121915 [GCTAGCACAGCACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGC ]
[+] EMBL CA753500 [ AGCACCGGTGGCAGTAGGAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCGTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGGTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGCTTACGATCGTTTCATCAGTTAAAAAAAAAAA]
[+] EMBL CF326545 [ AGCACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAtct ]
[+] EMBL AU029891 [ ACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A NAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAG CCCGNTGTCTC TGC AGTCG ]
[+] EMBL AU078240 [ CCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A CAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAAGGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGCAAGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCNCCTTTGTCTGGTTGTTCAat ]
[+] EMBL AU078246 [ CCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A CAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAA ]
[+] EMBL AU078248 [ CCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A CAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGT ]
[+] EMBL AU078247 [ CCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATC ]
[+] EMBL AU029850 [ TGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A NAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC AGTCGCA CGGCCTCGAGCGCA A TGCTTCTTCA AG A GGTCTGCTANTGCATGCTAGCCC NTGTCTC TGC A TCG A TTTCTCGTC GNTGTGTATC TGCANA ATTGTA TCGCGTG TCT CTTTG CT GTGGTT ANGAAGActct ]
[+] EMBL AU058417 [ AGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A NAGCAAC AACTTGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAG NCCGNTGTCTCTTGC AGTCGCA TTGCTCGTCGGCTGTGTATCTTGCAGAGATTGTAATCGCGTGTNCTCCTTTGTCT G TG TCATGAAGAG ]
[+] EMBL AU065648 [ AGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG A NAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAG CCCGCTGTCTC TGC AGTCG A TTGCTCGTCGGCTGT ]
[+] EMBL BE039740 [ TAGGAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCGTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGCTTACGATCGTTTCATCAGTTAAAAAAAAAAA]
[+] EMBL AU030986 [ AGTAGCAGCCTCATCACTCATCATTGAGCGCA TTCGAGTCGCCGGTACAGATGGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAAa ]
[-] EMBL BU673411 [ gaTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGAT GGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGCTTACGATCGTT ]
[+] EMBL AU078249 [ GGACGACCAAGNTGCCGGAGGCGAGGCACTGCCTNTCGCAGAG CCACAGGTTCAAGGGCATGTGCNTG AGCAGCAAC AAC TGCG CCAACGTNTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAA ]
[+] EMBL AU078238 [ gaAGGCGAGGCACTNCTTGTCGCAGAGCCCACAGGTTCAAGGNCATGTCCTTG AGCAGCAACAAAC TGCG CCAACGTGTGCAGGGACGNAGAGCTTCCCCCGACGGCGANTGCAA AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAAaaa ]
[+] EMBL AU077695 [ GCGAGGCACTGCCTGTCGCAGAG CCACAGGTTCAAGGGCATGTGCGTG AGCAGCAAC AAC TGCG CCAACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGAAAAAAAAa ]
[+] EMBL AU031513 [ TGCGTGAAGCAGCANC AA TGCGCCCAACGTNTGCA GGACGGAGAGCTTCCCCCGACGGCGATTGC A AGTCGCA CGGCCTCGAGCGCA AGTGCTTCTGCA AGAA GGTCTGCTAGTGCATGCTANCCCCGCTGTCTC TGC AGTCGCA TTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACA GGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAA ]
[+] EMBL BI805254 [ AGCAGCAAC AAC TGCG CCCACGTGTGCA GGACGGAGAGCTT CCCCGACGGCGAGTGC ACAGTCGCACCGGCCTCGAGCGCACAGTGCTTCTGCACAGAA GGTCTGCTAGTGCATGCTAGCCCCGCTGTCTC TGC AGTCGCACTTGCTCGTCGGCTGTGTATC TGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCT GTTGTTCATGACGAGCTTCTGTTCTTGGCTTACACGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGC AGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTGTGTGCTTACGATCGTTTCA ]
consensusID : consensus_16488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 611 fasta sequence
[CNTCCGAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGA-GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC-TGC-AAGAAGGTCTGCTAGT-GCATGCTAGCCCCGCTGTC-TCTGCAG-TC-GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGNATAC-GTNNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030016 [CNTCCGAAAGTAGCAGCCTCATCACTCATCANTGAGCGCNGTTCGA GTCNCCNGTACAGATGGCNCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCANGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCNGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTNGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGNATAC GTTNTGAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU030034 [ ccggcAAAGTAGCAGCCTCATCACNCATCAGTGAGCGCAGTTCGA GTCGCCGGTACAGATGGCTCCGTNTCGTCGCATGGTCGCGTCCGCCTTCCTCCNCCTGGCCATCCTCNTNGCCACAGAGATGGGGACGACCAAGGTNGCGGAGGCGAGGCACTNCCTNTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTNTNCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCNCCTTTNTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTNATAAGTACGCGCTGGATACATGCTCCNGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCNCATTTCAGCATTAATGAATTGGNNTAC GTNNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU065605 [ CAGCCTCATCACTCATCAGTGAGCGCA TTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGA NAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAA TGCTTC TGC AAGAAGGTCTGCTA T GCATGCTANCCCCG TGTC TCTGCAG TC G ATTGCTCGTCGGCTGTGTATCTGCAGA ATTGTA TCGCGTG TCT CTTTG CTGTTG TCATGACGA NTCTG TCTTGGGTTA AAGCNA TTGAt ]
[+] EMBL C74088 [ AGCCTCATCACTCATCAGTGAGCGCAGTTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAAT ]
[+] EMBL AU065599 [ GCCTCATCACTCATCAGTGAGCGCA TTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCNCCNGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGA NAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAG TTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGC AGTGCTTCTTGC AA AAGGTCTGCTAGT GCATGCTAGCCCg ]
[+] EMBL BE039726 [ TCATCACTCATCAGTGAGCGCAGTTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCGTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATNTCAGCATTAATGAATTGGCATACGGTGATGAAAAAAAAAAAAAAAAANAANNNNNNAANAAAAAAAA]
[+] EMBL AU031270 [ CTCATCAGTGAGCGCAGTTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCANCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGCAAAGAAAGTCTGCTAGTGGCATGCTAGCCCCGCTGTCTTCTGCAGTTC GCATTGCTCGTCGGnt ]
[+] EMBL AU029936 [ GAGCGCAGTTCGA GTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGA CAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGC ]
[+] EMBL C74193 [ GTGCGATGTCGCCGGTACAGATGGCTCCGNCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGA CAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTNCTTC TGC AAGAAGGTCTNCTAGT GCATGCTAAGCCCGCTGTC TCTGCAG TCGGCATTGCTCGTCGGCTGggg ]
[+] EMBL AU078210 [ TCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCANAGCCACAGGTTCAAGGGCATGTGCGTNAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGANAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTN TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCNCATTTCAGCATTAATGAATTGGCATAC G TGAAAAAAAAAAAAAAAA ]
[+] EMBL AU029937 [ CTNCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTC TGC AAGAAGGTCTGCTAGT GCATGCTAGCCCCGCTGTC TCTGCAG TC GCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGNATAC GTNNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16488#0 --ACGCNTCCGACCGTTGGCANTNGCAAAGTAGCAGCCTCATCANTCATCAGTGAGCNCA 58
consensus_16488#2 -------------------CNTCCG-AAAGTAGCAGCCTCATCACTCATCAGTGAGCGCA 40
consensus_16488#1 GCTAGCACAGCACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCA 60
* * ****************** ************ **
consensus_16488#0 GTTCGA-TCGCCGTTACAGATGNCTCCNTCTCNTCGCATGGTCGCGTCCGCCTTCCTCCT 117
consensus_16488#2 GTTCGAGTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCT 100
consensus_16488#1 GTTCGAGTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCT 120
****** ****** ******** **** **** ***************************
consensus_16488#0 NCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGNTGNCGGAGNCGAGGCACTG 177
consensus_16488#2 CCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTG 160
consensus_16488#1 CCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTG 180
*************************************** ** ***** **********
consensus_16488#0 CCTNTCGCAGAGCCACAGGTTCAAGGGCATGTGCNTNAGCAGCAACAANTGCGCCAACGT 237
consensus_16488#2 CCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGT 220
consensus_16488#1 CCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGT 240
*** ****************************** * *********** ***********
consensus_16488#0 GTGCAGGACGGNGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTG 297
consensus_16488#2 GTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTG 280
consensus_16488#1 GTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTG 300
*********** ************************************************
consensus_16488#0 CTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTC 357
consensus_16488#2 CTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTC 340
consensus_16488#1 CTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTC 360
************************************************************
consensus_16488#0 GTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGAC 417
consensus_16488#2 GTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGAC 400
consensus_16488#1 GTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGAC 420
************************************************************
consensus_16488#0 GAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAAT 477
consensus_16488#2 GAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAAT 460
consensus_16488#1 GAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAAT 480
************************************************************
consensus_16488#0 AAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAG 537
consensus_16488#2 AAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAG 520
consensus_16488#1 AAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAG 540
************************************************************
consensus_16488#0 CTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAATCTG 597
consensus_16488#2 CTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGNATACGTNNTGAAA--- 577
consensus_16488#1 CTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATGAAAAAG 600
******************************************* ****** ****
consensus_16488#0 TGTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 638
consensus_16488#2 -------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 611
consensus_16488#1 TGTGCTTACGATCGTTTCATCAGTTAAAAAAAAAAA----- 636
* * * * ***********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||