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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 1192 fasta sequence
[TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT-CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT-GGA-TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT-GGA-TCT-GGGACCAA--TATA-CAAGACAATTC-TC-TTGT-CCATGT-GGC-AAAATCT-AATC-TT-AGT-GG-AAAAGTCTTT-CCAACCATCA-TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG-AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA--TT-CAAT-GATT--GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC-TCGAGTTCTG-CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC-AAAAGCTGG-CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG-CGCTCCATGGAACAAAGAGAACCATTAC-GCACAAAAAACTAGCATCGTTTTGACAAGTTAAAAAAAA]
[+] EMBL AK104205 [TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ]
[+] EMBL AK060908 [TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ]
[+] EMBL AK071713 [ GATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGA ]
[+] EMBL OS2004A [ CTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACAATTATGCACATCTTTGACAAAACCCCTCATGTTCANAGAGATGCATTTGTTCCCCCAAGTGCAT CTCTNAT ]
[+] EMBL OSC25562 [ TCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGNCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGNCGGNCTCGGNNAGGNCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGNCCTCGACCGCCTCGGCTGCCGACTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCC ]
[+] EMBL AU160853 [ TCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGNGCGCCGCCGCCGTCGCCGCCGCCGACGTAGCCGCNTGGNTGGAGGAGGAGATGGNCGGNCTCGGGAAGGNCTTCTACGCGGTAGGGTTCTGGNTCCGGGAGACCGGCCAGGNCCTCGACCGCCTCGGCTGCCG CTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTNACAAAACCCCTCATGTTCACAGAGATGCATTTTTTGCCCCAAGTGCATNTTCTCATTGGTGATATTCAAGTTGGACAAGGGGCTTCAATTNGGTATGGGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT NGG TCT GGGACCAA TATA CAAGACAATTC TT TTGT CCATNT GG AAAAT ]
[+] EMBL OSS4865A [ CCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGTCGTNGNCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGNCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGNCCTCGACCGCCTNGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGATTGCGTCTTAAGAGGGGATGCAAACAACGGTCAAATT GGA TCTNGGGACCAA TATA CAAG CAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG NAAAG CTT ]
[+] EMBL AK122051 [ CGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ]
[+] EMBL AU163552 [ GCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTANGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT NTCTCANTGGTGATATTCAAG ]
[+] EMBL AU095119 [ TCAGGGAGCCAGCAAATTCACCCGCGATTCCG GCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTATGGGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATTGGGA TCTGGGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGN CAAATCT AATC TT AGT GG AAAAGTCTTT CCAACat ]
[+] EMBL CB680957 [ AGGGAGCCTTCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGTCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGCGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCATACAACGTTCAGATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCCTACCGCTGCATTACCAGGATGTACTGTTG AGGACGAACCTTTTGTGGGTATGGGGGC ]
[+] EMBL AU062927 [ AGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTNTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATTGGGA TCT TGGNCCAA TATA CAAG CAATTC TCTTTGT CCATGT NGC AAAATCT AATCTTT AGT GG GAAAGTCTTT CC ANCATAA TTGGGGGTAA ]
[+] EMBL AU075808 [ AGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT A ]
[+] EMBL CA758879 [ ggCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTC ]
[-] EMBL CB663870 [ ATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGCAAAAAGCTGGCCCATGTACTTC ]
[+] EMBL AU030693 [ ttnaanatTT GNATTCT GGGACCCANTTATACCAAGACAATTCTTCTTTGTCCCATGTGGGCAAAAATCTAAATC TTAAGTGGG AAAAGTCTTTCCCAACCATCATTTGGGGATAACNTCACAGTAGGTCATAGTGCTGTATTACAAGGATNTACTGTTGAAGGACGAAGCATTTGTTGGTATGGGGNCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTNTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAaaaaaaaaa ]
[+] EMBL OSAA31827 [ AATC TT AGT GGAAAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCC ]
[+] EMBL AU030674 [ C TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCNTTGTGC AAAAaaaaaaaaa ]
[+] EMBL AU030303 [ AAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GNACAAAAA ]
[+] EMBL AU108856 [ TTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCNNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAAA ]
[+] EMBL AU182279 [ TTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAATCTAGCATCGTTTTGACAAGTTAAAAAAAA]
[+] EMBL BQ908258 [ GGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCCTTGTGC NAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCNTTAC GCACAAAAAAaaaa ]
[+] EMBL BQ908634 [ cCACGAGTTTCCAATGGATTTGGGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCCGTCGAGTTCTGCCCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTT TGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCNTTAC GCACAAAAAAaaaa ]
[+] EMBL AU160852 [ TT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAAAAAAaaa ]
[+] EMBL AU163919 [ GCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAa ]
[+] EMBL AU197672 [ GTTCTG GCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGNCAGTGCAGGATTGTTGAAGGTGTCACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATGCCGCTCCATGGAACAAAGAGAACCATTACAGCACAAAAATCTAGCATCGTTTTGACAAaaaa ]
[+] EMBL AU108402 [ TCTGTTTTTNCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ]
[+] EMBL OSS3871A [ TCTGTTTTTNCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAG ]
[+] EMBL AU108427 [ CTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ]
[+] EMBL AU097655 [ CTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCNNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ]
[-] EMBL OSAA31879 [ GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGA ]
consensusID : consensus_16492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence
[TACGTGATGTGCCACACTGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGGAAATAGGACTGGGAATGTTGGAGGAAGCTGGGTGTGCCGCAAAGAAGTGCTGCTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTGGGTGCTGACTGCGGGGAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTGTGCTGGCCCAATGAAACCTGTGGTGTGTGCTGGTGTGTTTGGCTGTGCTGCTGCTGGGTGCCTGTGTGGCAATGCTATGCTGTATATTGGACA-GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCT-CCCCATAATTTTGGGTCGAGCATTGTGCAAAAAAATGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGCTCCATGGAAAGAGAACCTTACGCACAGAAATCTAGCATCGTTTGACAGTAAAAAAA]
[+] EMBL BQ907028 [TACGTGATGTGCCACACTGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGGAAATAGGACTGGGAATGTTGGAGGAAGCTGGGTGTGCCGCAAAGAAGTGCTGCTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTGGGTGCTGACTGCGGGGAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTGTGCTGGCCCAATGAAACCTGTGGTGTGTGCTGGTGTGTTTGGCTGTGCTGCTGCTGGGTGCCTGTGTGGCAATGCTATGCTGTATATTGGACA GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCT CCCCATAATTTTGGGTCGAGCATTGTGCAAAAAAA ]
[+] EMBL BI811965 [ tctTATATTGGACACGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGCCGGTTTATGTTTACTTTCCTCCCCCATAATTTTGGGTCGAGCATTGTGCACAAAGCTGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGCTCCATGGAAAGAGAACCTTACGCACAGAAATCTAGCATCGTTTGACAGTAAAAAAA]
consensusID : consensus_16492#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCCCGGCGTTTTATAATTGGTTTTAACCTTTTCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAAAAGCTGCCCATGTACTTCGTTTTCNGTATTCCATATGTTTAAGATGCGCTCCCATGGAACCAAGAGAACCATTACGCACA]
[+] EMBL BQ909007 [CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCCCGGCGTTTTATAATTGGTTTTAACCTTTTCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAAAAGCTGCCCATGTACTTCGTTTTCNGTATTCCATATGTTTAAGATGCGCTCCCATGGAACCAAGAGAACCATTACGCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16492#0 TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCA 60
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCG 120
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 CCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCT 180
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACT 240
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 ACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTC 300
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 ATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCATCTCTCATTGGTGATATTCAAGTTG 360
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GACAAGGAGCTTCAATTTGGTATGGATGCGTCTTAAGAGGGGATGCAAACAACGTTCAAA 420
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 TTGGATCTGGGACCAATATACAAGACAATTCTCTTGTCCATGTGGCAAAATCTAATCTTA 480
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GTGGAAAAGTCTTTCCAACCATCATTGGGGATAACGTCACAGTAGGTCATAGTGCTGTAT 540
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 TACAAGGATGTACTGTTGAGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATG 600
consensus_16492#1 ------------------------------------------------------------
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAA 660
consensus_16492#1 -------------------------------------------TACGTGATGTGCCACAC 17
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTG 720
consensus_16492#1 TGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGG 77
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 ATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCC 780
consensus_16492#1 A-AATAGGACTGGGAATGTTGGAGGA--AGC---TGGGTGTGCCGCA--AAGAAGTGCTG 129
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 ATGCTGCTGAGAATGCCAAGCCTGTTGAAAAG-ACTGAATTTGAGAAGCTGTTCCGCAAG 839
consensus_16492#1 CTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTG-GGTGCTGA-CTGCGGG 187
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 AAGTCTGCTCACCAGGATGAGGAACACGATTCAATGATTGGTGCTACTCGGGAGGTTACT 899
consensus_16492#1 GAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTG-----TGCTGGCCCAATGA--AAC 240
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 CCGGAGCTGACGCCCTCGAGTTCTGCCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCT 959
consensus_16492#1 CTGTGGTGTGTGCTGGTGTGTTTGGCTG------------TGCTGCTGCTGGGTGCCTGT 288
consensus_16492#2 ------------------------------------------------------------
consensus_16492#0 GGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCA 1019
consensus_16492#1 G-TGGCAATGCTATGCTGTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCA 347
consensus_16492#2 -CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCC--CGGCGTTTTATAA 57
* * * * *** ** * * ** * * * * * * *
consensus_16492#0 TGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGCAA 1079
consensus_16492#1 TGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCA-TAATTTTGGGTCGAGCATTGTGCAA 406
consensus_16492#2 TTGGTTTTAACCTTT---TCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAA 114
* *** *** * ** ** *** * *************************
consensus_16492#0 AAGC-TGGCCATGTA---CTTCGTTTTCTGT----ATTCCATATGTTTAAG---ATGCGC 1128
consensus_16492#1 AAAAATGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGC 466
consensus_16492#2 AAGC-TGCCCATGTA---CTTCGTTTTCNGT----ATTCCATATGTTTAAG---ATGCGC 163
** ** ******* ********* * ** * * ***** ******
consensus_16492#0 TCC-ATGGAACAAAGAGAACCATTACGCACAAAAAACTAGCATCGTTTTGACAAGTTAAA 1187
consensus_16492#1 TCC-ATGGA---AAGAGAACC-TTACGCACAGAAATCTAGCATCGTTT-GACAG--TAAA 518
consensus_16492#2 TCCCATGGAACCAAGAGAACCATTACGCACA----------------------------- 194
*** ***** ********* *********
consensus_16492#0 AAAAA 1192
consensus_16492#1 AAAA- 522
consensus_16492#2 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||