Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1655 cluster # 1655       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1655#0 length = 1138 sequences # 1  
consensus_1655#1 length = 749 sequences # 1  

consensusID : consensus_1655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1138
fasta sequence
                              [CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC]

[+] EMBL AK068422             [CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC]


>consensus_1655#0 CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACT CCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGC CGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCC GTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATC GCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAG ATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCG CTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATAT ATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGG CATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGT GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGT ACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGG ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGC AATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTA AGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC



consensusID : consensus_1655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence
                              [ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT]

[+] EMBL CA753323             [ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT]


>consensus_1655#1 ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAAT GGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATA GGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGT TCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACT CTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAG TTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATA CGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGC ACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTA TATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTG ACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAA AAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATA ATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCC CACCCCANNCCCAGAGTATCTTTTACCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1655#0      CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACT 60
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      CCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGC 120
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      CGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCC 180
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      GTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATC 240
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      GCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAG 300
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      ATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCG 360
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      CTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATAT 420
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      ATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGG 480
consensus_1655#1      ------------------------------------------------------------
                                                                                  

consensus_1655#0      CATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 540
consensus_1655#1      ------------------------ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 36
                                              ************************************

consensus_1655#0      AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 600
consensus_1655#1      AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 96
                      ************************************************************

consensus_1655#0      CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGT 660
consensus_1655#1      CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGT 156
                      ******************************************************* ****

consensus_1655#0      GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 720
consensus_1655#1      GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 216
                      ************************************************************

consensus_1655#0      CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 780
consensus_1655#1      CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 276
                      ************************************************************

consensus_1655#0      TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 840
consensus_1655#1      TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 336
                      ************************************************************

consensus_1655#0      ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGT 900
consensus_1655#1      ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGT 396
                      ************************************************** *********

consensus_1655#0      ACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGG 960
consensus_1655#1      ACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGG 456
                      ******************************* *** ***************** ******

consensus_1655#0      ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGC 1020
consensus_1655#1      ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGC 516
                      ***********************************************  ***********

consensus_1655#0      AATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTA 1080
consensus_1655#1      AAGTNTTCATAGA-AGGTAGTGGTGACCCCTAATTT-GTTCATATGTAAGCTACT--ATA 572
                      ** * *   **** ******* ****** ******* ******************   **

consensus_1655#0      AGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC-- 1138
consensus_1655#1      AATATAGAA----GTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAA 628
                      * ****  *    * * ***  ********     * *   *    *  * *  **    

consensus_1655#0      ------------------------------------------------------------
consensus_1655#1      AACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCT 688
                                                                                  

consensus_1655#0      ------------------------------------------------------------
consensus_1655#1      TCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCT 748
                                                                                  

consensus_1655#0      -
consensus_1655#1      T 749
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)